Rmu_sc0038374.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0038374.1
OG0025558
Physical Location & Seq
Forward (+)
202 .. 1321
1120 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0038374.1_g000001.1.cds

Sequence Viewer

Length: 867 bp
atggcagcatcgtccagactgtcgctgttggacggagtggaggaggtcgtgagcctggtcgggggcagcgaagcaatttatgattccttcttttatctgtgcggcaggagactggccccaaagaaacctgttaagatccctttgttctcgacaataatctttggaatatggggcttaaggagaggttcgatgctggtgctggcggcatatgaccgaattggcttgttggcggaggtgcctttgcatgctttggaaatctgggtggcggtgaagggtttatggtttgctatgcggaacgagcgagccctaactctactggggaatgctctgggtatctttgtttgggtagaccaagcggttgtgcagcctaaggacccggtccaaagaatctgtgtgatccaagacgtgcgcctgagaatttgggcccagcggattggtttctccagcgttacctcttcgaatccggaaccagtggatggttctctgggctcagtggcggtgacaggggagttggaatcacttggggagaaggtggtgcaacccgggttggtgcagtctgggtcggtccagttgggatcggcgctggagatgcaggtcgacacggcggcagttctagggaaggagaccccgagtttttctgcgggaaactctaggtttaaactagagttggctgcaggggtggcctcatcaaaaagcccgcggatcaagtggaccgatggaggcccgccgacccggagggccaaaagcccggcccagcccgtcaaaaagcctgcaaaagcccgccttggtgggctgagggctggccaatcaaaaagccagcaaaagccctgcccggtccaccaaaagcctgctaggcccggcccgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

288

Amino Acids

30.81

Weight (kDa)

10.01

Isoelectric Point (pI)

39.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025558)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003291.1_g000008 Rmu_sc0028489.1_g000001 Rmu_sc0038374.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 583
AccB1I GGYRCC 1 cut(s) 235
AccB7I CCANNNNNTGG 1 cut(s) 476
AccI GTMKAC 2 cut(s) 348, 597
AccII CGCG 1 cut(s) 700
AccIII TCCGGA 1 cut(s) 463
AclWI GGATC 4 cut(s) 130, 391, 583, 710
AcoI YGGCCR 1 cut(s) 802
AcsI RAATTY 1 cut(s) 417
AfiI CCNNNNNNNGG 2 cut(s) 61, 476
AflII CTTAAG 1 cut(s) 175
AjiI CACGTC 1 cut(s) 406
AjnI CCWGG 1 cut(s) 54
Alw26I GTCTC 2 cut(s) 103, 617
AlwI GGATC 4 cut(s) 130, 391, 583, 710
Ama87I CYCGRG 2 cut(s) 542, 628
Aor13HI TCCGGA 1 cut(s) 463
AoxI GGCC 9 cut(s) 114, 423, 681, 721, 738, 750, 802, 854, 859
ApaI GGGCCC 1 cut(s) 427
ApeKI GCWGC 4 cut(s) 5, 66, 364, 671
ApoI RAATTY 1 cut(s) 417
AspLEI GCGC 2 cut(s) 411, 583
AsuC2I CCSGG 7 cut(s) 377, 543, 544, 733, 749, 833, 858
AsuHPI GGTGA 2 cut(s) 280, 511
AsuII TTCGAA 1 cut(s) 458
AvaI CYCGRG 2 cut(s) 542, 628
AvaII GGWCC 5 cut(s) 373, 379, 565, 711, 835
AxyI CCTNAGG 1 cut(s) 369
BaeGI GKGCMC 1 cut(s) 427
BalI TGGCCA 1 cut(s) 804
BanI GGYRCC 1 cut(s) 235
BanII GRGCYC 3 cut(s) 307, 427, 491
BbvCI CCTCAGC 1 cut(s) 794
BbvI GCAGC 4 cut(s) 17, 78, 376, 658
BccI CCATC 2 cut(s) 470, 710
BceAI ACGGC 1 cut(s) 618
BcgI CGANNNNNNTGC 2 cut(s) 178, 212
BciT130I CCWGG 1 cut(s) 56
BcnI CCSGG 7 cut(s) 377, 543, 544, 733, 749, 833, 858
BcoDI GTCTC 2 cut(s) 103, 617
BfaI CTAG 4 cut(s) 614, 651, 662, 852
BfmI CTRYAG 1 cut(s) 672
BfoI RGCGCY 1 cut(s) 584
BfrI CTTAAG 1 cut(s) 175
BfuAI ACCTGC 1 cut(s) 583
BglI GCCNNNNNGGC 1 cut(s) 853
BisI GCNGC 7 cut(s) 6, 67, 103, 204, 365, 606, 672
BlsI GCNGC 7 cut(s) 7, 68, 104, 205, 366, 607, 673
Bme1390I CCNGG 8 cut(s) 56, 377, 543, 544, 733, 749, 833, 858
Bme18I GGWCC 5 cut(s) 373, 379, 565, 711, 835
BmeT110I CYCGRG 2 cut(s) 542, 628
BmgBI CACGTC 1 cut(s) 406
BmiI GGNNCC 5 cut(s) 117, 237, 375, 425, 468
BmrFI CCNGG 8 cut(s) 56, 377, 543, 544, 733, 749, 833, 858
BmrI ACTGGG 1 cut(s) 326
BmsI GCATC 3 cut(s) 17, 180, 579
BmuI ACTGGG 1 cut(s) 326
BpmI CTGGAG 2 cut(s) 427, 605
Bpu10I CCTNAGC 1 cut(s) 794
Bpu14I TTCGAA 1 cut(s) 458
BpuMI CCSGG 7 cut(s) 377, 543, 544, 733, 749, 833, 858
BsaI GGTCTC 1 cut(s) 617
BsaJI CCNNGG 3 cut(s) 542, 698, 784
BsaWI WCCGGW 1 cut(s) 463
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 476
Bse1I ACTGG 4 cut(s) 117, 321, 470, 568
Bse21I CCTNAGG 1 cut(s) 369
BseAI TCCGGA 1 cut(s) 463
BseBI CCWGG 1 cut(s) 56
BseDI CCNNGG 3 cut(s) 542, 698, 784
BseGI GGATG 1 cut(s) 481
BseLI CCNNNNNNNGG 2 cut(s) 61, 476
BseMII CTCAG 3 cut(s) 404, 504, 785
BseNI ACTGG 4 cut(s) 117, 321, 470, 568
BseRI GAGGAG 1 cut(s) 56
BseSI GKGCMC 1 cut(s) 427
BseXI GCAGC 4 cut(s) 17, 78, 376, 658
BseYI CCCAGC 2 cut(s) 426, 753
BsgI GTGCAG 2 cut(s) 383, 572
Bsh1236I CGCG 1 cut(s) 700
BshFI GGCC 9 cut(s) 116, 425, 683, 723, 740, 752, 804, 856, 861
BshNI GGYRCC 1 cut(s) 235
BsiHKCI CYCGRG 2 cut(s) 542, 628
BsiSI CCGG 7 cut(s) 377, 464, 543, 733, 749, 833, 858
BslI CCNNNNNNNGG 2 cut(s) 61, 476
BsmAI GTCTC 2 cut(s) 103, 617
BsmI GAATGC 1 cut(s) 328
BsnI GGCC 9 cut(s) 116, 425, 683, 723, 740, 752, 804, 856, 861
Bso31I GGTCTC 1 cut(s) 617
BsoBI CYCGRG 2 cut(s) 542, 628
Bsp119I TTCGAA 1 cut(s) 458
Bsp120I GGGCCC 1 cut(s) 423
Bsp1286I GDGCHC 3 cut(s) 307, 427, 491
Bsp13I TCCGGA 1 cut(s) 463
Bsp143I GATC 4 cut(s) 135, 396, 575, 702
BspANI GGCC 9 cut(s) 116, 425, 683, 723, 740, 752, 804, 856, 861
BspCNI CTCAG 3 cut(s) 405, 503, 786
BspEI TCCGGA 1 cut(s) 463
BspFNI CGCG 1 cut(s) 700
BspLI GGNNCC 5 cut(s) 117, 237, 375, 425, 468
BspMAI CTGCAG 1 cut(s) 676
BspMI ACCTGC 1 cut(s) 583
BspPI GGATC 4 cut(s) 130, 391, 583, 710
BspT104I TTCGAA 1 cut(s) 458
BspT107I GGYRCC 1 cut(s) 235
BspTI CTTAAG 1 cut(s) 175
BspTNI GGTCTC 1 cut(s) 617
BsrI ACTGG 4 cut(s) 117, 321, 470, 568
BssECI CCNNGG 3 cut(s) 542, 698, 784
BssMI GATC 4 cut(s) 135, 396, 575, 702
BssT1I CCWWGG 1 cut(s) 784
Bst2UI CCWGG 1 cut(s) 56
Bst4CI ACNGT 1 cut(s) 21
Bst6I CTCTTC 1 cut(s) 460
BstAFI CTTAAG 1 cut(s) 175
BstBI TTCGAA 1 cut(s) 458
BstDEI CTNAG 4 cut(s) 369, 413, 490, 794
BstDSI CCRYGG 1 cut(s) 698
BstF5I GGATG 1 cut(s) 481
BstFNI CGCG 1 cut(s) 700
BstH2I RGCGCY 1 cut(s) 584
BstHHI GCGC 2 cut(s) 411, 583
BstKTI GATC 4 cut(s) 138, 399, 578, 705
BstMAI GTCTC 2 cut(s) 103, 617
BstMBI GATC 4 cut(s) 135, 396, 575, 702
BstMWI GCNNNNNNNGC 4 cut(s) 298, 589, 680, 853
BstNI CCWGG 1 cut(s) 56
BstNSI RCATGY 1 cut(s) 248
BstSCI CCNGG 8 cut(s) 54, 375, 541, 542, 731, 747, 831, 856
BstSFI CTRYAG 1 cut(s) 672
BstSLI GKGCMC 1 cut(s) 427
BstUI CGCG 1 cut(s) 700
BstV1I GCAGC 4 cut(s) 17, 78, 376, 658
BstX2I RGATCY 1 cut(s) 135
BstXI CCANNNNNNTGG 1 cut(s) 434
BstYI RGATCY 1 cut(s) 135
Bsu36I CCTNAGG 1 cut(s) 369
BsuRI GGCC 9 cut(s) 116, 425, 683, 723, 740, 752, 804, 856, 861
BtgI CCRYGG 1 cut(s) 698
BtrI CACGTC 1 cut(s) 406
BtsCI GGATG 1 cut(s) 481
BtsIMutI CAGTG 2 cut(s) 477, 498
BveI ACCTGC 1 cut(s) 583
CfoI GCGC 2 cut(s) 411, 583
Cfr42I CCGCGG 1 cut(s) 701
Cfr9I CCCGGG 1 cut(s) 542
CviAII CATG 1 cut(s) 245
DdeI CTNAG 4 cut(s) 369, 413, 490, 794
DpnI GATC 4 cut(s) 137, 398, 577, 704
DpnII GATC 4 cut(s) 135, 396, 575, 702
DraI TTTAAA 1 cut(s) 658
EaeI YGGCCR 1 cut(s) 802
Eam1104I CTCTTC 1 cut(s) 460
EarI CTCTTC 1 cut(s) 460
EciI GGCGGA 1 cut(s) 245
Eco130I CCWWGG 1 cut(s) 784
Eco24I GRGCYC 3 cut(s) 307, 427, 491
Eco31I GGTCTC 1 cut(s) 617
Eco47I GGWCC 5 cut(s) 373, 379, 565, 711, 835
Eco81I CCTNAGG 1 cut(s) 369
Eco88I CYCGRG 2 cut(s) 542, 628
EcoO109I RGGNCCY 1 cut(s) 373
EcoRII CCWGG 1 cut(s) 54
EcoT14I CCWWGG 1 cut(s) 784
EcoT38I GRGCYC 3 cut(s) 307, 427, 491
ErhI CCWWGG 1 cut(s) 784
FaeI CATG 1 cut(s) 248
FaiI YATR 7 cut(s) 81, 169, 208, 210, 246, 280, 290
FalI AAGNNNNNCTT 2 cut(s) 768, 800
FatI CATG 1 cut(s) 244
FauI CCCGC 4 cut(s) 634, 705, 732, 788
FauNDI CATATG 1 cut(s) 208
FblI GTMKAC 2 cut(s) 348, 597
Fnu4HI GCNGC 7 cut(s) 6, 67, 103, 204, 365, 606, 672
FokI GGATG 1 cut(s) 488
FriOI GRGCYC 3 cut(s) 307, 427, 491
Fsp4HI GCNGC 7 cut(s) 6, 67, 103, 204, 365, 606, 672
FspBI CTAG 4 cut(s) 614, 651, 662, 852
GlaI GCGC 2 cut(s) 410, 582
GluI GCNGC 7 cut(s) 6, 67, 103, 204, 365, 606, 672
GsaI CCCAGC 2 cut(s) 430, 757
GsuI CTGGAG 2 cut(s) 427, 605
HaeII RGCGCY 1 cut(s) 584
HaeIII GGCC 9 cut(s) 116, 425, 683, 723, 740, 752, 804, 856, 861
HapII CCGG 7 cut(s) 377, 464, 543, 733, 749, 833, 858
HhaI GCGC 2 cut(s) 411, 583
Hin1II CATG 1 cut(s) 248
Hin6I GCGC 2 cut(s) 409, 581
HinP1I GCGC 2 cut(s) 409, 581
HincII GTYRAC 1 cut(s) 598
HindII GTYRAC 1 cut(s) 598
HinfI GANTC 4 cut(s) 83, 387, 460, 515
HpaII CCGG 7 cut(s) 377, 464, 543, 733, 749, 833, 858
HphI GGTGA 2 cut(s) 280, 511
Hpy166II GTNNAC 4 cut(s) 349, 598, 711, 838
Hpy188III TCNNGA 4 cut(s) 15, 49, 148, 464
Hpy8I GTNNAC 4 cut(s) 349, 598, 711, 838
HpyAV CCTTC 4 cut(s) 97, 265, 523, 613
HpyCH4III ACNGT 1 cut(s) 21
HpyCH4IV ACGT 1 cut(s) 405
HpyCH4V TGCA 7 cut(s) 244, 364, 538, 553, 592, 674, 773
HpyF10VI GCNNNNNNNGC 4 cut(s) 298, 589, 680, 853
HpyF3I CTNAG 4 cut(s) 369, 413, 490, 794
HpySE526I ACGT 1 cut(s) 405
Hsp92II CATG 1 cut(s) 248
HspAI GCGC 2 cut(s) 409, 581
Kpn2I TCCGGA 1 cut(s) 463
KspI CCGCGG 1 cut(s) 701
Kzo9I GATC 4 cut(s) 135, 396, 575, 702
Lsp1109I GCAGC 4 cut(s) 17, 78, 376, 658
LweI GCATC 3 cut(s) 17, 180, 579
MaeI CTAG 4 cut(s) 614, 651, 662, 852
MaeII ACGT 1 cut(s) 405
MaeIII GTNAC 2 cut(s) 448, 499
MalI GATC 4 cut(s) 137, 398, 577, 704
MboI GATC 4 cut(s) 135, 396, 575, 702
MboII GAAGA 1 cut(s) 447
MflI RGATCY 1 cut(s) 135
MhlI GDGCHC 3 cut(s) 307, 427, 491
MlsI TGGCCA 1 cut(s) 804
MluCI AATT 3 cut(s) 75, 216, 417
MluNI TGGCCA 1 cut(s) 804
MmeI TCCRAC 2 cut(s) 9, 492
MnlI CCTC 9 cut(s) 34, 37, 176, 226, 463, 694, 713, 729, 789
Mox20I TGGCCA 1 cut(s) 804
MroI TCCGGA 1 cut(s) 463
MscI TGGCCA 1 cut(s) 804
MseI TTAA 3 cut(s) 132, 176, 657
Msp20I TGGCCA 1 cut(s) 804
MspA1I CMGCKG 2 cut(s) 430, 700
MspCI CTTAAG 1 cut(s) 175
MspI CCGG 7 cut(s) 377, 464, 543, 733, 749, 833, 858
MspR9I CCNGG 8 cut(s) 56, 377, 543, 544, 733, 749, 833, 858
MssI GTTTAAAC 1 cut(s) 658
Mva1269I GAATGC 1 cut(s) 328
MvaI CCWGG 1 cut(s) 56
MvnI CGCG 1 cut(s) 700
MwoI GCNNNNNNNGC 4 cut(s) 298, 589, 680, 853
NciI CCSGG 7 cut(s) 377, 543, 544, 733, 749, 833, 858
NdeI CATATG 1 cut(s) 208
NdeII GATC 4 cut(s) 135, 396, 575, 702
NlaIII CATG 1 cut(s) 248
NlaIV GGNNCC 5 cut(s) 117, 237, 375, 425, 468
NmuCI GTSAC 1 cut(s) 499
NspI RCATGY 1 cut(s) 248
NspV TTCGAA 1 cut(s) 458
PaeI GCATGC 1 cut(s) 248
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PctI GAATGC 1 cut(s) 328
PfeI GAWTC 4 cut(s) 83, 387, 460, 515
PflFI GACNNNGTC 1 cut(s) 377
PflMI CCANNNNNTGG 1 cut(s) 476
PkrI GCNGC 7 cut(s) 7, 68, 104, 205, 366, 607, 673
PmeI GTTTAAAC 1 cut(s) 658
PpuMI RGGWCCY 1 cut(s) 373
Psp5II RGGWCCY 1 cut(s) 373
Psp6I CCWGG 1 cut(s) 54
PspFI CCCAGC 2 cut(s) 426, 753
PspGI CCWGG 1 cut(s) 54
PspN4I GGNNCC 5 cut(s) 117, 237, 375, 425, 468
PspOMI GGGCCC 1 cut(s) 423
PspPPI RGGWCCY 1 cut(s) 373
PstI CTGCAG 1 cut(s) 676
PsuI RGATCY 1 cut(s) 135
PsyI GACNNNGTC 1 cut(s) 377
SacII CCGCGG 1 cut(s) 701
SalI GTCGAC 1 cut(s) 596
SaqAI TTAA 3 cut(s) 132, 176, 657
SatI GCNGC 7 cut(s) 6, 67, 103, 204, 365, 606, 672
Sau3AI GATC 4 cut(s) 135, 396, 575, 702
ScrFI CCNGG 8 cut(s) 56, 377, 543, 544, 733, 749, 833, 858
SduI GDGCHC 3 cut(s) 307, 427, 491
SetI ASST 9 cut(s) 48, 130, 187, 237, 408, 455, 534, 597, 656
SfaNI GCATC 3 cut(s) 17, 180, 579
SfcI CTRYAG 1 cut(s) 672
Sfr303I CCGCGG 1 cut(s) 701
SfuI TTCGAA 1 cut(s) 458
SgrBI CCGCGG 1 cut(s) 701
SinI GGWCC 5 cut(s) 373, 379, 565, 711, 835
SmaI CCCGGG 1 cut(s) 544
SmlI CTYRAG 1 cut(s) 175
SmoI CTYRAG 1 cut(s) 175
SphI GCATGC 1 cut(s) 248
Sse9I AATT 3 cut(s) 75, 216, 417
SspMI CTAG 4 cut(s) 614, 651, 662, 852
StyD4I CCNGG 8 cut(s) 54, 375, 541, 542, 731, 747, 831, 856
StyI CCWWGG 1 cut(s) 784
TaaI ACNGT 1 cut(s) 21
TaiI ACGT 1 cut(s) 408
TaqI TCGA 4 cut(s) 149, 188, 458, 597
TaqII GACCGA 3 cut(s) 228, 553, 728
TasI AATT 3 cut(s) 75, 216, 417
TauI GCSGC 3 cut(s) 105, 206, 608
TfiI GAWTC 4 cut(s) 83, 387, 460, 515
Tru1I TTAA 3 cut(s) 132, 176, 657
Tru9I TTAA 3 cut(s) 132, 176, 657
TscAI CASTG 2 cut(s) 477, 498
TseFI GTSAC 1 cut(s) 499
TseI GCWGC 4 cut(s) 5, 66, 364, 671
Tsp45I GTSAC 1 cut(s) 499
TspGWI ACGGA 1 cut(s) 48
TspMI CCCGGG 1 cut(s) 542
TspRI CASTG 2 cut(s) 477, 498
Tth111I GACNNNGTC 1 cut(s) 377
Van91I CCANNNNNTGG 1 cut(s) 476
Vha464I CTTAAG 1 cut(s) 175
VpaK11BI GGWCC 5 cut(s) 373, 379, 565, 711, 835
XapI RAATTY 1 cut(s) 417
XceI RCATGY 1 cut(s) 248
XmaI CCCGGG 1 cut(s) 542
XmiI GTMKAC 2 cut(s) 348, 597
XspI CTAG 4 cut(s) 614, 651, 662, 852
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.