Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040271.1

Orthogroup ID

OG0021203

Physical Location & Seq

Genomic Coordinates Reverse (-)

1041 .. 1838

Gene Structure 798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040271.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ctgaggcttcagagtggtcacaagtactgcttgctgggtaagctgtcgtccgaggttgggtggaaccactatgataccatcagggagctagaaaagaagcgaaaagagaggtctcagttggcttacgagaggaagaagcagctaaacaaactcaaggtgaaggctgaaaaggctgcagaggagaagcttggcgcccagcttgaaatcattgcccctgttaagtactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13

Protein Analysis

75

Amino Acids

8.78

Weight (kDa)

9.75

Isoelectric Point (pI)

64.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021203)

Species	Orthologous Gene IDs
malus_domestica	MD07G1031400.v1.1 MD07G1032400.v1.1
rosa_multiflora	Rmu_co8431567.1_g000001 Rmu_sc0004076.1_g000024 Rmu_sc0040271.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	191
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	2 cut(s)	26, 224
AfiI	CCNNNNNNNGG	1 cut(s)	57
AgsI	TTSAA	1 cut(s)	203
AluBI	AGCT	5 cut(s)	43, 88, 142, 187, 199
AluI	AGCT	5 cut(s)	43, 88, 142, 187, 199
Alw26I	GTCTC	1 cut(s)	117
ApeKI	GCWGC	2 cut(s)	139, 173
AspLEI	GCGC	1 cut(s)	194
AsuHPI	GGTGA	1 cut(s)	169
BanI	GGYRCC	1 cut(s)	191
BbvI	GCAGC	2 cut(s)	151, 160
BccI	CCATC	1 cut(s)	86
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	1 cut(s)	89
BfmI	CTRYAG	1 cut(s)	174
BfoI	RGCGCY	1 cut(s)	195
BisI	GCNGC	2 cut(s)	140, 174
BlsI	GCNGC	2 cut(s)	141, 175
BmcAI	AGTACT	2 cut(s)	26, 224
BmiI	GGNNCC	2 cut(s)	65, 193
BpuEI	CTTGAG	1 cut(s)	137
BsaHI	GRCGYC	1 cut(s)	192
BsaI	GGTCTC	1 cut(s)	117
BsaJI	CCNNGG	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	1 cut(s)	57
Bse3DI	GCAATG	1 cut(s)	207
BseDI	CCNNGG	1 cut(s)	51
BseLI	CCNNNNNNNGG	1 cut(s)	57
BseMI	GCAATG	1 cut(s)	207
BseMII	CTCAG	1 cut(s)	128
BseRI	GAGGAG	1 cut(s)	194
BseXI	GCAGC	2 cut(s)	151, 160
BseYI	CCCAGC	2 cut(s)	34, 195
BshNI	GGYRCC	1 cut(s)	191
BslI	CCNNNNNNNGG	1 cut(s)	57
BsmAI	GTCTC	1 cut(s)	117
Bso31I	GGTCTC	1 cut(s)	117
BspCNI	CTCAG	1 cut(s)	127
BspLI	GGNNCC	2 cut(s)	65, 193
BspMAI	CTGCAG	1 cut(s)	178
BspT107I	GGYRCC	1 cut(s)	191
BspTNI	GGTCTC	1 cut(s)	117
BsrDI	GCAATG	1 cut(s)	207
BssECI	CCNNGG	1 cut(s)	51
BssNI	GRCGYC	1 cut(s)	192
BstACI	GRCGYC	1 cut(s)	192
BstC8I	GCNNGC	1 cut(s)	32
BstDEI	CTNAG	2 cut(s)	2, 114
BstH2I	RGCGCY	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	194
BstMAI	GTCTC	1 cut(s)	117
BstMWI	GCNNNNNNNGC	2 cut(s)	40, 170
BstSFI	CTRYAG	1 cut(s)	174
BstV1I	GCAGC	2 cut(s)	151, 160
Cac8I	GCNNGC	1 cut(s)	32
CfoI	GCGC	1 cut(s)	194
Csp6I	GTAC	2 cut(s)	25, 223
CviJI	RGCY	9 cut(s)	7, 43, 88, 122, 142, 164, 173, 187, 199
CviKI_1	RGCY	9 cut(s)	7, 43, 88, 122, 142, 164, 173, 187, 199
CviQI	GTAC	2 cut(s)	25, 223
DdeI	CTNAG	2 cut(s)	2, 114
DinI	GGCGCC	1 cut(s)	193
Eco31I	GGTCTC	1 cut(s)	117
EgeI	GGCGCC	1 cut(s)	193
EheI	GGCGCC	1 cut(s)	193
FaiI	YATR	1 cut(s)	72
FalI	AAGNNNNNCTT	2 cut(s)	14, 46
Fnu4HI	GCNGC	2 cut(s)	140, 174
Fsp4HI	GCNGC	2 cut(s)	140, 174
FspBI	CTAG	1 cut(s)	89
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	2 cut(s)	140, 174
GsaI	CCCAGC	2 cut(s)	38, 199
HaeII	RGCGCY	1 cut(s)	195
HhaI	GCGC	1 cut(s)	194
Hin1I	GRCGYC	1 cut(s)	192
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HindIII	AAGCTT	1 cut(s)	185
HphI	GGTGA	1 cut(s)	169
Hpy188I	TCNGA	2 cut(s)	12, 52
HpyAV	CCTTC	1 cut(s)	154
HpyCH4V	TGCA	1 cut(s)	176
HpyF10VI	GCNNNNNNNGC	2 cut(s)	40, 170
HpyF3I	CTNAG	2 cut(s)	2, 114
Hsp92I	GRCGYC	1 cut(s)	192
HspAI	GCGC	1 cut(s)	192
KasI	GGCGCC	1 cut(s)	191
LmnI	GCTCC	1 cut(s)	85
LpnPI	CCDG	3 cut(s)	20, 67, 209
Lsp1109I	GCAGC	2 cut(s)	151, 160
MaeI	CTAG	1 cut(s)	89
MaeIII	GTNAC	1 cut(s)	17
MboII	GAAGA	1 cut(s)	145
Mly113I	GGCGCC	1 cut(s)	192
MnlI	CCTC	4 cut(s)	46, 102, 123, 172
MseI	TTAA	1 cut(s)	219
MwoI	GCNNNNNNNGC	2 cut(s)	40, 170
NarI	GGCGCC	1 cut(s)	192
NlaIV	GGNNCC	2 cut(s)	65, 193
NmuCI	GTSAC	1 cut(s)	17
PkrI	GCNGC	2 cut(s)	141, 175
PluTI	GGCGCC	1 cut(s)	195
PspFI	CCCAGC	2 cut(s)	34, 195
PspN4I	GGNNCC	2 cut(s)	65, 193
PstI	CTGCAG	1 cut(s)	178
RsaI	GTAC	2 cut(s)	26, 224
RsaNI	GTAC	2 cut(s)	25, 223
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	2 cut(s)	140, 174
ScaI	AGTACT	2 cut(s)	26, 224
SetI	ASST	8 cut(s)	45, 57, 90, 113, 144, 159, 189, 201
SfcI	CTRYAG	1 cut(s)	174
SfoI	GGCGCC	1 cut(s)	193
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
SspDI	GGCGCC	1 cut(s)	191
SspMI	CTAG	1 cut(s)	89
TatI	WGTACW	2 cut(s)	24, 222
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TseFI	GTSAC	1 cut(s)	17
TseI	GCWGC	2 cut(s)	139, 173
Tsp45I	GTSAC	1 cut(s)	17
XspI	CTAG	1 cut(s)	89
ZrmI	AGTACT	2 cut(s)	26, 224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.