Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040397.1

Orthogroup ID

OG0003726

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 940

Gene Structure 940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040397.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

agtgcctgatttggagctcatgtttgactgcgttgactggccggtgattctgtcaaggttctatagcgggcccaattcttctgccccgccaccattgtttcgttactgtggggatgaccgctcactcgatatagtcttccctgattggtccttttggggatggcctgaaattaatatagctccatgggggaacttgttgaagcagctagaggaaggtaacaagaggagcagatgggtagacagacagccttatgcttactggaaagggaatccggctgtcgcggcaacaaggcaagacctcctcaaatgtaatgtttcagaggaacaggattggaatgctcgcgtttatgctcaggattggtctcgagaagtaaaggatgggttcaagcaatcggatttggcaagccaatgcgttcataggtataagatctatatagaagggtctgcttggtctgtgagtaacaagtacattcttgcttgtgattccgttaccttgatagtaaagccccgatactatgacttcttcacgagaggtttgatgccagtgcaccactactggcccatcaaggataatgacaagtgcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

Glyco_transf_90

Protein Analysis

194

Amino Acids

22.78

Weight (kDa)

5.94

Isoelectric Point (pI)

59.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48980 AT3G48980 AT5G23850
fragaria_vesca	FvH4_7g29530 FvH4_7g29540 FvH4_7g29540
malus_domestica	MD01G1201400.v1.1 MD01G1201500.v1.1 MD07G1269900.v1.1
prunus_persica	Prupe.2G294800_v2.0.a1 Prupe.2G294800_v2.0.a1 Prupe.2G294900_v2.0.a1 Prupe.2G294900_v2.0.a1
pyrus_communis	pycom01g21110 pycom07g24700
rosa_chinensis	RchiOBHm_Chr1g0377371 RchiOBHm_Chr1g0377381
rosa_laevigata	RLG00000026523 RLG00000026524
rosa_multiflora	Rmu_sc0000895.1_g000002 Rmu_sc0040396.1_g000001 Rmu_sc0040397.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281270
rosa_rugosa	Rorug01G0403100
rosa_samantha	Rh1AG420900 Rh1AG421000 Rh1BG379700 Rh1BG379800 Rh1CG393700 Rh1CG393800 Rh1DG410700 Rh1DG410800
rosa_wichuraiana	Rw1G036900 Rw1G036910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	121
AccI	GTMKAC	1 cut(s)	238
AccII	CGCG	2 cut(s)	282, 343
AciI	CCGC	4 cut(s)	67, 87, 119, 282
AcoI	YGGCCR	1 cut(s)	39
AfaI	GTAC	1 cut(s)	468
AgsI	TTSAA	2 cut(s)	200, 386
AluBI	AGCT	3 cut(s)	17, 180, 206
AluI	AGCT	3 cut(s)	17, 180, 206
Alw21I	GWGCWC	2 cut(s)	19, 550
Alw26I	GTCTC	1 cut(s)	367
Alw44I	GTGCAC	1 cut(s)	546
Ama87I	CYCGRG	1 cut(s)	364
AoxI	GGCC	4 cut(s)	39, 69, 162, 558
ApaI	GGGCCC	1 cut(s)	73
ApaLI	GTGCAC	1 cut(s)	546
ApeKI	GCWGC	1 cut(s)	203
AseI	ATTAAT	1 cut(s)	172
AspS9I	GGNCC	4 cut(s)	69, 70, 148, 559
AsuHPI	GGTGA	1 cut(s)	56
AvaI	CYCGRG	1 cut(s)	364
AvaII	GGWCC	1 cut(s)	148
BaeGI	GKGCMC	2 cut(s)	73, 550
BanII	GRGCYC	2 cut(s)	19, 73
BauI	CACGAG	1 cut(s)	527
BbsI	GAAGAC	1 cut(s)	128
Bbv12I	GWGCWC	2 cut(s)	19, 550
BbvI	GCAGC	1 cut(s)	215
BccI	CCATC	4 cut(s)	154, 226, 372, 570
BcoDI	GTCTC	1 cut(s)	367
BfaI	CTAG	1 cut(s)	207
BfmI	CTRYAG	1 cut(s)	62
BglII	AGATCT	1 cut(s)	427
BisI	GCNGC	2 cut(s)	204, 283
BlsI	GCNGC	2 cut(s)	205, 284
Bme18I	GGWCC	1 cut(s)	148
BmeT110I	CYCGRG	1 cut(s)	364
BmgT120I	GGNCC	4 cut(s)	69, 70, 148, 559
BmiI	GGNNCC	1 cut(s)	71
BmsI	GCATC	1 cut(s)	529
BpiI	GAAGAC	1 cut(s)	128
Bpu10I	CCTNAGC	1 cut(s)	352
BsaI	GGTCTC	1 cut(s)	367
BsaJI	CCNNGG	1 cut(s)	183
BsaXI	ACNNNNNCTCC	2 cut(s)	6, 36
Bse118I	RCCGGY	1 cut(s)	41
Bse1I	ACTGG	4 cut(s)	42, 264, 543, 561
BseDI	CCNNGG	1 cut(s)	183
BseGI	GGATG	3 cut(s)	119, 165, 383
BseMII	CTCAG	1 cut(s)	366
BseNI	ACTGG	4 cut(s)	42, 264, 543, 561
BseRI	GAGGAG	2 cut(s)	239, 291
BseSI	GKGCMC	2 cut(s)	73, 550
BseXI	GCAGC	1 cut(s)	215
Bsh1236I	CGCG	2 cut(s)	282, 343
BshFI	GGCC	4 cut(s)	41, 71, 164, 560
BsiHKAI	GWGCWC	2 cut(s)	19, 550
BsiHKCI	CYCGRG	1 cut(s)	364
BsiSI	CCGG	2 cut(s)	42, 273
BsmAI	GTCTC	1 cut(s)	367
BsmI	GAATGC	1 cut(s)	341
BsnI	GGCC	4 cut(s)	41, 71, 164, 560
Bso31I	GGTCTC	1 cut(s)	367
BsoBI	CYCGRG	1 cut(s)	364
Bsp120I	GGGCCC	1 cut(s)	69
Bsp1286I	GDGCHC	3 cut(s)	19, 73, 550
Bsp143I	GATC	1 cut(s)	427
Bsp19I	CCATGG	1 cut(s)	183
BspACI	CCGC	4 cut(s)	67, 87, 119, 282
BspANI	GGCC	4 cut(s)	41, 71, 164, 560
BspCNI	CTCAG	1 cut(s)	365
BspFNI	CGCG	2 cut(s)	282, 343
BspLI	GGNNCC	1 cut(s)	71
BspTNI	GGTCTC	1 cut(s)	367
BsrBI	CCGCTC	1 cut(s)	121
BsrFI	RCCGGY	1 cut(s)	41
BsrI	ACTGG	4 cut(s)	42, 264, 543, 561
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	1 cut(s)	427
BssSI	CACGAG	1 cut(s)	527
BssT1I	CCWWGG	1 cut(s)	183
Bst2BI	CACGAG	1 cut(s)	527
Bst4CI	ACNGT	1 cut(s)	108
BstC8I	GCNNGC	3 cut(s)	69, 341, 404
BstDEI	CTNAG	1 cut(s)	352
BstDSI	CCRYGG	1 cut(s)	183
BstF5I	GGATG	3 cut(s)	119, 165, 383
BstFNI	CGCG	2 cut(s)	282, 343
BstKTI	GATC	1 cut(s)	430
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	1 cut(s)	427
BstMWI	GCNNNNNNNGC	1 cut(s)	282
BstSFI	CTRYAG	1 cut(s)	62
BstSLI	GKGCMC	2 cut(s)	73, 550
BstUI	CGCG	2 cut(s)	282, 343
BstV1I	GCAGC	1 cut(s)	215
BstV2I	GAAGAC	1 cut(s)	128
BstX2I	RGATCY	1 cut(s)	427
BstYI	RGATCY	1 cut(s)	427
BsuRI	GGCC	4 cut(s)	41, 71, 164, 560
BtgI	CCRYGG	1 cut(s)	183
BtsCI	GGATG	3 cut(s)	119, 165, 383
BtsIMutI	CAGTG	1 cut(s)	550
Cac8I	GCNNGC	3 cut(s)	69, 341, 404
Cfr10I	RCCGGY	1 cut(s)	41
Cfr13I	GGNCC	4 cut(s)	69, 70, 148, 559
Csp6I	GTAC	1 cut(s)	467
CviAII	CATG	2 cut(s)	20, 184
CviQI	GTAC	1 cut(s)	467
DdeI	CTNAG	1 cut(s)	352
DpnI	GATC	1 cut(s)	429
DpnII	GATC	1 cut(s)	427
EaeI	YGGCCR	1 cut(s)	39
Ecl136II	GAGCTC	1 cut(s)	17
Eco130I	CCWWGG	1 cut(s)	183
Eco24I	GRGCYC	2 cut(s)	19, 73
Eco31I	GGTCTC	1 cut(s)	367
Eco47I	GGWCC	1 cut(s)	148
Eco53kI	GAGCTC	1 cut(s)	17
Eco88I	CYCGRG	1 cut(s)	364
EcoICRI	GAGCTC	1 cut(s)	17
EcoT14I	CCWWGG	1 cut(s)	183
EcoT38I	GRGCYC	2 cut(s)	19, 73
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	2 cut(s)	23, 187
FatI	CATG	2 cut(s)	19, 183
FauI	CCCGC	2 cut(s)	60, 94
FblI	GTMKAC	1 cut(s)	238
Fnu4HI	GCNGC	2 cut(s)	204, 283
FokI	GGATG	3 cut(s)	126, 172, 390
FriOI	GRGCYC	2 cut(s)	19, 73
Fsp4HI	GCNGC	2 cut(s)	204, 283
FspBI	CTAG	1 cut(s)	207
GluI	GCNGC	2 cut(s)	204, 283
HaeIII	GGCC	4 cut(s)	41, 71, 164, 560
HapII	CCGG	2 cut(s)	42, 273
Hin1II	CATG	2 cut(s)	23, 187
HincII	GTYRAC	1 cut(s)	35
HindII	GTYRAC	1 cut(s)	35
HinfI	GANTC	3 cut(s)	47, 269, 483
HpaII	CCGG	2 cut(s)	42, 273
HphI	GGTGA	1 cut(s)	56
Hpy166II	GTNNAC	3 cut(s)	35, 239, 548
Hpy188I	TCNGA	2 cut(s)	320, 395
Hpy188III	TCNNGA	4 cut(s)	354, 364, 366, 527
Hpy8I	GTNNAC	3 cut(s)	35, 239, 548
HpyAV	CCTTC	2 cut(s)	207, 432
HpyCH4III	ACNGT	1 cut(s)	108
HpyCH4V	TGCA	2 cut(s)	548, 583
HpyF10VI	GCNNNNNNNGC	1 cut(s)	282
HpyF3I	CTNAG	1 cut(s)	352
Hsp92II	CATG	2 cut(s)	23, 187
Kzo9I	GATC	1 cut(s)	427
LmnI	GCTCC	3 cut(s)	14, 185, 226
Lsp1109I	GCAGC	1 cut(s)	215
LweI	GCATC	1 cut(s)	529
MaeI	CTAG	1 cut(s)	207
MaeIII	GTNAC	4 cut(s)	102, 216, 459, 488
MalI	GATC	1 cut(s)	429
MbiI	CCGCTC	1 cut(s)	121
MboI	GATC	1 cut(s)	427
MboII	GAAGA	3 cut(s)	70, 128, 515
MflI	RGATCY	1 cut(s)	427
MhlI	GDGCHC	3 cut(s)	19, 73, 550
MluCI	AATT	2 cut(s)	74, 169
MnlI	CCTC	6 cut(s)	203, 217, 309, 312, 314, 525
MseI	TTAA	1 cut(s)	172
MspI	CCGG	2 cut(s)	42, 273
Mva1269I	GAATGC	1 cut(s)	341
MvnI	CGCG	2 cut(s)	282, 343
MwoI	GCNNNNNNNGC	1 cut(s)	282
NcoI	CCATGG	1 cut(s)	183
NdeII	GATC	1 cut(s)	427
NlaIII	CATG	2 cut(s)	23, 187
NlaIV	GGNNCC	1 cut(s)	71
PaeR7I	CTCGAG	1 cut(s)	364
PctI	GAATGC	1 cut(s)	341
PfeI	GAWTC	3 cut(s)	47, 269, 483
PkrI	GCNGC	2 cut(s)	205, 284
PshBI	ATTAAT	1 cut(s)	172
Psp124BI	GAGCTC	1 cut(s)	19
PspN4I	GGNNCC	1 cut(s)	71
PspOMI	GGGCCC	1 cut(s)	69
PspPI	GGNCC	4 cut(s)	69, 70, 148, 559
PsuI	RGATCY	1 cut(s)	427
RsaI	GTAC	1 cut(s)	468
RsaNI	GTAC	1 cut(s)	467
SacI	GAGCTC	1 cut(s)	19
SaqAI	TTAA	1 cut(s)	172
SatI	GCNGC	2 cut(s)	204, 283
Sau3AI	GATC	1 cut(s)	427
Sau96I	GGNCC	4 cut(s)	69, 70, 148, 559
SduI	GDGCHC	3 cut(s)	19, 73, 550
SetI	ASST	9 cut(s)	19, 60, 182, 208, 218, 301, 423, 495, 536
SfaNI	GCATC	1 cut(s)	529
SfcI	CTRYAG	1 cut(s)	62
Sfr274I	CTCGAG	1 cut(s)	364
SinI	GGWCC	1 cut(s)	148
SlaI	CTCGAG	1 cut(s)	364
SmlI	CTYRAG	1 cut(s)	364
SmoI	CTYRAG	1 cut(s)	364
Sse9I	AATT	2 cut(s)	74, 169
SsiI	CCGC	4 cut(s)	67, 87, 119, 282
SspMI	CTAG	1 cut(s)	207
SstI	GAGCTC	1 cut(s)	19
StyI	CCWWGG	1 cut(s)	183
TaaI	ACNGT	1 cut(s)	108
TaqI	TCGA	2 cut(s)	127, 365
TasI	AATT	2 cut(s)	74, 169
TatI	WGTACW	1 cut(s)	466
TauI	GCSGC	1 cut(s)	285
TfiI	GAWTC	3 cut(s)	47, 269, 483
Tru1I	TTAA	1 cut(s)	172
Tru9I	TTAA	1 cut(s)	172
TscAI	CASTG	1 cut(s)	550
TseI	GCWGC	1 cut(s)	203
TspDTI	ATGAA	1 cut(s)	405
TspGWI	ACGGA	1 cut(s)	476
TspRI	CASTG	1 cut(s)	550
VneI	GTGCAC	1 cut(s)	546
VpaK11BI	GGWCC	1 cut(s)	148
VspI	ATTAAT	1 cut(s)	172
XhoI	CTCGAG	1 cut(s)	364
XmiI	GTMKAC	1 cut(s)	238
XspI	CTAG	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.