Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003726

Physical Location & Seq

Genomic Coordinates Forward (+)

51036631 .. 51040268

Gene Structure 3638 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0403100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGAACGGAGTTCGACGAAGTAACAGAAAAACAGAAATGGAAGCTTCACTGAGAAAGCTGAAGCCTCTCTCCGATTGCAGCAACACCGTTACCGTCGCCGTCACCGATAGCACCGCCGCCTCCGCCTCTACGCAGTCGTCCACGGCCTCCTCCGGTACGATCAAACGCCAGAACCCGACTCTTTCCTCCGTCGCCAAGACACTGCACGCCTCCTTGACTACCAAAACCGACGCCGTTTCGGACCCTAGGGGATCCGCTCCTTCTACTCCTCTGGCTTCCTCCTCCGTTTCAGGTTCCAGCGATTATGAGGTTTCGGAGCCTTCTTCAGTGTACAGTCAAAGACAAACGGCACTAAAAAGGAAGACTACAGGGAAGGAAAATGATGTACAATTTAGTTGCCCTCGTACACCAAAGACCCGGAATGTTGGGAAAAAAACTAAACAAGATGGACATAACATCCAATCTGAGATGGACAGAACACCAATTGCTTCCGCTCCTACACCTCGCATTTCATCATCAAGTTCTGATACCAGTAATCGTGAGGTATATGAACCTCATTCAGTCTATACTCGAAGACAGACTGCATCGAAAAGAAATAGCAAAGGGCAGGAAAACATTGGAGCTTCTAGTTGCCCTCCTGCACTGAAGATCCGGAATACTTGGGATAACTCATATGAAGATGGATACAACAGTCTATCAAGGAAATCCAAGGCTTCTTGCAGAAAGAAGGTTGTACCAACTAAAAAAGAAGCTTCTGAGTACACTTCGCCAGACCTTGAAAAGCAGAGAGCTTACTTTGCAGAGCTTGATAAATATGAACTGCCAGTAGAGGAGGCTGAAGAATGGGAGTTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

285

Amino Acids

31.17

Weight (kDa)

9.36

Isoelectric Point (pI)

49.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sororin_C	PF25220	259 - 277	6e-06	Sororin C-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48980 AT3G48980 AT5G23850
fragaria_vesca	FvH4_7g29530 FvH4_7g29540 FvH4_7g29540
malus_domestica	MD01G1201400.v1.1 MD01G1201500.v1.1 MD07G1269900.v1.1
prunus_persica	Prupe.2G294800_v2.0.a1 Prupe.2G294800_v2.0.a1 Prupe.2G294900_v2.0.a1 Prupe.2G294900_v2.0.a1
pyrus_communis	pycom01g21110 pycom07g24700
rosa_chinensis	RchiOBHm_Chr1g0377371 RchiOBHm_Chr1g0377381
rosa_laevigata	RLG00000026523 RLG00000026524
rosa_multiflora	Rmu_sc0000895.1_g000002 Rmu_sc0040396.1_g000001 Rmu_sc0040397.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281270
rosa_rugosa	Rorug01G0403100
rosa_samantha	Rh1AG420900 Rh1AG421000 Rh1BG379700 Rh1BG379800 Rh1CG393700 Rh1CG393800 Rh1DG410700 Rh1DG410800
rosa_wichuraiana	Rw1G036900 Rw1G036910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	257, 494
AccIII	TCCGGA	1 cut(s)	651
AciI	CCGC	5 cut(s)	114, 117, 123, 255, 492
AclWI	GGATC	3 cut(s)	246, 259, 643
AcuI	CTGAAG	4 cut(s)	80, 309, 665, 858
AcyI	GRCGYC	1 cut(s)	231
AfaI	GTAC	6 cut(s)	157, 332, 387, 406, 735, 761
AgsI	TTSAA	1 cut(s)	779
AluBI	AGCT	6 cut(s)	44, 58, 623, 752, 791, 805
AluI	AGCT	6 cut(s)	44, 58, 623, 752, 791, 805
AlwI	GGATC	3 cut(s)	246, 259, 643
Aor13HI	TCCGGA	1 cut(s)	651
AoxI	GGCC	1 cut(s)	144
ApeKI	GCWGC	1 cut(s)	78
AspA2I	CCTAGG	1 cut(s)	245
AspS9I	GGNCC	1 cut(s)	241
AsuC2I	CCSGG	1 cut(s)	418
AsuHPI	GGTGA	1 cut(s)	94
AvaII	GGWCC	1 cut(s)	241
AvrII	CCTAGG	1 cut(s)	245
BaeI	ACNNNNGTAYC	2 cut(s)	676, 709
BamHI	GGATCC	1 cut(s)	251
BbsI	GAAGAC	2 cut(s)	368, 580
BbvI	GCAGC	1 cut(s)	90
BccI	CCATC	3 cut(s)	440, 463, 674
BceAI	ACGGC	4 cut(s)	83, 159, 218, 363
BciVI	GTATCC	1 cut(s)	677
BcnI	CCSGG	1 cut(s)	418
BfaI	CTAG	2 cut(s)	246, 627
BfmI	CTRYAG	1 cut(s)	366
BfuI	GTATCC	1 cut(s)	677
BisI	GCNGC	2 cut(s)	79, 117
BlnI	CCTAGG	1 cut(s)	245
BlsI	GCNGC	2 cut(s)	80, 118
Bme1390I	CCNGG	1 cut(s)	418
Bme18I	GGWCC	1 cut(s)	241
BmgT120I	GGNCC	1 cut(s)	241
BmiI	GGNNCC	4 cut(s)	243, 253, 295, 318
BmrFI	CCNGG	1 cut(s)	418
BmsI	GCATC	1 cut(s)	593
BpiI	GAAGAC	2 cut(s)	368, 580
BpuMI	CCSGG	1 cut(s)	418
BsaHI	GRCGYC	1 cut(s)	231
BsaJI	CCNNGG	3 cut(s)	141, 245, 708
BsaWI	WCCGGW	2 cut(s)	152, 651
Bse1I	ACTGG	2 cut(s)	531, 824
BseAI	TCCGGA	1 cut(s)	651
BseDI	CCNNGG	3 cut(s)	141, 245, 708
BseGI	GGATG	1 cut(s)	456
BseMII	CTCAG	3 cut(s)	41, 456, 747
BseNI	ACTGG	2 cut(s)	531, 824
BseRI	GAGGAG	4 cut(s)	139, 258, 271, 845
BseXI	GCAGC	1 cut(s)	90
BsgI	GTGCAG	2 cut(s)	188, 624
BshFI	GGCC	1 cut(s)	146
BsiSI	CCGG	3 cut(s)	153, 418, 652
BsnI	GGCC	1 cut(s)	146
Bsp13I	TCCGGA	1 cut(s)	651
Bsp1407I	TGTACA	2 cut(s)	330, 385
Bsp143I	GATC	3 cut(s)	159, 251, 648
BspACI	CCGC	5 cut(s)	114, 117, 123, 255, 492
BspANI	GGCC	1 cut(s)	146
BspCNI	CTCAG	3 cut(s)	42, 457, 748
BspEI	TCCGGA	1 cut(s)	651
BspLI	GGNNCC	4 cut(s)	243, 253, 295, 318
BspPI	GGATC	3 cut(s)	246, 259, 643
BsrBI	CCGCTC	2 cut(s)	257, 494
BsrGI	TGTACA	2 cut(s)	330, 385
BsrI	ACTGG	2 cut(s)	531, 824
BssECI	CCNNGG	3 cut(s)	141, 245, 708
BssMI	GATC	3 cut(s)	159, 251, 648
BssNI	GRCGYC	1 cut(s)	231
BssT1I	CCWWGG	2 cut(s)	245, 708
Bst4CI	ACNGT	4 cut(s)	88, 94, 335, 692
BstACI	GRCGYC	1 cut(s)	231
BstAUI	TGTACA	2 cut(s)	330, 385
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	3 cut(s)	50, 465, 756
BstDSI	CCRYGG	1 cut(s)	141
BstF5I	GGATG	1 cut(s)	456
BstKTI	GATC	3 cut(s)	162, 254, 651
BstMBI	GATC	3 cut(s)	159, 251, 648
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 797
BstSCI	CCNGG	1 cut(s)	416
BstSFI	CTRYAG	1 cut(s)	366
BstV1I	GCAGC	1 cut(s)	90
BstV2I	GAAGAC	2 cut(s)	368, 580
BstX2I	RGATCY	2 cut(s)	251, 648
BstYI	RGATCY	2 cut(s)	251, 648
BsuI	GTATCC	1 cut(s)	677
BsuRI	GGCC	1 cut(s)	146
BtgI	CCRYGG	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	456
BtsI	GCAGTG	1 cut(s)	200
BtsIMutI	CAGTG	4 cut(s)	47, 200, 333, 641
Cac8I	GCNNGC	1 cut(s)	207
Cfr13I	GGNCC	1 cut(s)	241
CseI	GACGC	1 cut(s)	239
Csp6I	GTAC	6 cut(s)	156, 331, 386, 405, 734, 760
CviQI	GTAC	6 cut(s)	156, 331, 386, 405, 734, 760
DdeI	CTNAG	3 cut(s)	50, 465, 756
DpnI	GATC	3 cut(s)	161, 253, 650
DpnII	GATC	3 cut(s)	159, 251, 648
EciI	GGCGGA	1 cut(s)	112
Eco130I	CCWWGG	2 cut(s)	245, 708
Eco47I	GGWCC	1 cut(s)	241
Eco57I	CTGAAG	4 cut(s)	80, 309, 665, 858
EcoT14I	CCWWGG	2 cut(s)	245, 708
ErhI	CCWWGG	2 cut(s)	245, 708
FaiI	YATR	8 cut(s)	306, 453, 547, 549, 567, 673, 675, 816
FauNDI	CATATG	1 cut(s)	673
Fnu4HI	GCNGC	2 cut(s)	79, 117
FokI	GGATG	1 cut(s)	443
Fsp4HI	GCNGC	2 cut(s)	79, 117
FspBI	CTAG	2 cut(s)	246, 627
GluI	GCNGC	2 cut(s)	79, 117
HaeIII	GGCC	1 cut(s)	146
HapII	CCGG	3 cut(s)	153, 418, 652
HgaI	GACGC	1 cut(s)	239
Hin1I	GRCGYC	1 cut(s)	231
HindIII	AAGCTT	2 cut(s)	42, 750
HinfI	GANTC	1 cut(s)	178
HpaII	CCGG	3 cut(s)	153, 418, 652
HphI	GGTGA	1 cut(s)	94
Hpy166II	GTNNAC	4 cut(s)	141, 331, 407, 762
Hpy188I	TCNGA	6 cut(s)	73, 241, 316, 466, 526, 757
Hpy188III	TCNNGA	2 cut(s)	539, 652
Hpy8I	GTNNAC	4 cut(s)	141, 331, 407, 762
Hpy99I	CGWCG	4 cut(s)	18, 98, 194, 233
HpyAV	CCTTC	4 cut(s)	270, 330, 367, 721
HpyCH4III	ACNGT	4 cut(s)	88, 94, 335, 692
HpyCH4V	TGCA	6 cut(s)	78, 205, 584, 641, 720, 800
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 797
HpyF3I	CTNAG	3 cut(s)	50, 465, 756
Hsp92I	GRCGYC	1 cut(s)	231
Kpn2I	TCCGGA	1 cut(s)	651
Kzo9I	GATC	3 cut(s)	159, 251, 648
LmnI	GCTCC	4 cut(s)	262, 316, 499, 620
Lsp1109I	GCAGC	1 cut(s)	90
LweI	GCATC	1 cut(s)	593
MaeI	CTAG	2 cut(s)	246, 627
MaeIII	GTNAC	3 cut(s)	20, 88, 100
MalI	GATC	3 cut(s)	161, 253, 650
MbiI	CCGCTC	2 cut(s)	257, 494
MboI	GATC	3 cut(s)	159, 251, 648
MboII	GAAGA	6 cut(s)	315, 373, 585, 658, 689, 851
MfeI	CAATTG	1 cut(s)	483
MflI	RGATCY	2 cut(s)	251, 648
MluCI	AATT	2 cut(s)	389, 483
MlyI	GAGTC	1 cut(s)	172
MmeI	TCCRAC	1 cut(s)	831
MroI	TCCGGA	1 cut(s)	651
MspI	CCGG	3 cut(s)	153, 418, 652
MspR9I	CCNGG	1 cut(s)	418
MunI	CAATTG	1 cut(s)	483
MwoI	GCNNNNNNNGC	2 cut(s)	122, 797
NciI	CCSGG	1 cut(s)	418
NdeI	CATATG	1 cut(s)	673
NdeII	GATC	3 cut(s)	159, 251, 648
NlaIV	GGNNCC	4 cut(s)	243, 253, 295, 318
NmuCI	GTSAC	1 cut(s)	100
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PkrI	GCNGC	2 cut(s)	80, 118
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
PspN4I	GGNNCC	4 cut(s)	243, 253, 295, 318
PspPI	GGNCC	1 cut(s)	241
PsuI	RGATCY	2 cut(s)	251, 648
RsaI	GTAC	6 cut(s)	157, 332, 387, 406, 735, 761
RsaNI	GTAC	6 cut(s)	156, 331, 386, 405, 734, 760
SatI	GCNGC	2 cut(s)	79, 117
Sau3AI	GATC	3 cut(s)	159, 251, 648
Sau96I	GGNCC	1 cut(s)	241
SchI	GAGTC	1 cut(s)	172
ScrFI	CCNGG	1 cut(s)	418
SfaNI	GCATC	1 cut(s)	593
SfcI	CTRYAG	1 cut(s)	366
SinI	GGWCC	1 cut(s)	241
Sse9I	AATT	2 cut(s)	389, 483
SsiI	CCGC	5 cut(s)	114, 117, 123, 255, 492
SspMI	CTAG	2 cut(s)	246, 627
StyD4I	CCNGG	1 cut(s)	416
StyI	CCWWGG	2 cut(s)	245, 708
TaaI	ACNGT	4 cut(s)	88, 94, 335, 692
TaqI	TCGA	3 cut(s)	13, 571, 587
TasI	AATT	2 cut(s)	389, 483
TatI	WGTACW	3 cut(s)	330, 385, 759
TauI	GCSGC	1 cut(s)	119
TscAI	CASTG	4 cut(s)	54, 207, 333, 648
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	1 cut(s)	78
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	5 cut(s)	17, 501, 564, 690, 831
TspGWI	ACGGA	3 cut(s)	21, 178, 274
TspRI	CASTG	4 cut(s)	54, 207, 333, 648
VpaK11BI	GGWCC	1 cut(s)	241
XmaJI	CCTAGG	1 cut(s)	245
XspI	CTAG	2 cut(s)	246, 627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.