Rmu_sc0041250.1_g000001

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0041250.1
OG0027975
Physical Location & Seq
Forward (+)
208 .. 1072
865 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0041250.1_g000001.1.cds

Sequence Viewer

Length: 512 bp
atgccctactcatatttcattatttcaagtctccgaaggcatcgcaaagaaaaagtccaggtcaaaaagaagaagcttcttggcaagtgcgcctcgggaattgagaccttcagagatgatgatgaccttagaagaggagaagaaatatcaccagctcttctcaaagcaattgaggagtccagattttcagtcattgtcttctctcaaaactatgcttcctcaaggtggtgtttggatgaactcgtcaagatacttgaatgcagaaaatctggacaagaggttataccagttttctacaaggtggatccctcacatgtacgacaccaaaaaggcaccttcgctgacgcattgaataagcttgaagacagatacaaggatagggtgggcaaatggagggaagctctttcagatgcagcaaatttggctggatggacttacgaggaagaccggtccgaagctgaatttatcaagaagattgttgtggacttgtccgcccgagtagtaaacccttc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

171

Amino Acids

19.78

Weight (kDa)

9.06

Isoelectric Point (pI)

56.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0027975)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g10730
rosa_multiflora Rmu_sc0041250.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 332
AciI CCGC 1 cut(s) 492
AclWI GGATC 2 cut(s) 299, 312
AcsI RAATTY 2 cut(s) 418, 461
AcuI CTGAAG 1 cut(s) 94
AfaI GTAC 1 cut(s) 318
AfiI CCNNNNNNNGG 1 cut(s) 225
AflIII ACRYGT 1 cut(s) 313
AgeI ACCGGT 1 cut(s) 447
AgsI TTSAA 4 cut(s) 27, 257, 352, 362
AjnI CCWGG 1 cut(s) 57
AluBI AGCT 5 cut(s) 76, 155, 358, 401, 458
AluI AGCT 5 cut(s) 76, 155, 358, 401, 458
Alw26I GTCTC 2 cut(s) 35, 98
AlwI GGATC 2 cut(s) 299, 312
Ama87I CYCGRG 2 cut(s) 94, 495
ApeKI GCWGC 1 cut(s) 413
ApoI RAATTY 2 cut(s) 418, 461
ArsI GACNNNNNNTTYG 2 cut(s) 39, 71
AsiGI ACCGGT 1 cut(s) 447
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 1 cut(s) 450
AsuHPI GGTGA 1 cut(s) 141
AvaI CYCGRG 2 cut(s) 94, 495
AvaII GGWCC 1 cut(s) 450
BamHI GGATCC 1 cut(s) 304
BanI GGYRCC 1 cut(s) 332
BbsI GAAGAC 3 cut(s) 190, 369, 450
BbvI GCAGC 1 cut(s) 425
BccI CCATC 1 cut(s) 423
BciT130I CCWGG 1 cut(s) 59
BcoDI GTCTC 2 cut(s) 35, 98
BisI GCNGC 1 cut(s) 414
BlsI GCNGC 1 cut(s) 415
Bme1390I CCNGG 1 cut(s) 59
Bme18I GGWCC 1 cut(s) 450
BmeT110I CYCGRG 2 cut(s) 94, 495
BmgT120I GGNCC 1 cut(s) 450
BmiI GGNNCC 2 cut(s) 306, 334
BmrFI CCNGG 1 cut(s) 59
BmsI GCATC 2 cut(s) 49, 400
BpiI GAAGAC 3 cut(s) 190, 369, 450
BplI GAGNNNNNCTC 2 cut(s) 385, 417
BpuEI CTTGAG 1 cut(s) 205
BsaI GGTCTC 1 cut(s) 98
BsaJI CCNNGG 1 cut(s) 93
BsaWI WCCGGW 1 cut(s) 447
Bsc4I CCNNNNNNNGG 1 cut(s) 225
Bse118I RCCGGY 1 cut(s) 447
Bse1I ACTGG 1 cut(s) 287
BseBI CCWGG 1 cut(s) 59
BseDI CCNNGG 1 cut(s) 93
BseGI GGATG 2 cut(s) 241, 434
BseLI CCNNNNNNNGG 1 cut(s) 225
BseNI ACTGG 1 cut(s) 287
BseRI GAGGAG 2 cut(s) 150, 188
BseXI GCAGC 1 cut(s) 425
BshNI GGYRCC 1 cut(s) 332
BshTI ACCGGT 1 cut(s) 447
BsiHKCI CYCGRG 2 cut(s) 94, 495
BsiSI CCGG 1 cut(s) 448
BslI CCNNNNNNNGG 1 cut(s) 225
BsmAI GTCTC 2 cut(s) 35, 98
BsmI GAATGC 1 cut(s) 263
Bso31I GGTCTC 1 cut(s) 98
BsoBI CYCGRG 2 cut(s) 94, 495
Bsp143I GATC 1 cut(s) 304
BspACI CCGC 1 cut(s) 492
BspLI GGNNCC 2 cut(s) 306, 334
BspPI GGATC 2 cut(s) 299, 312
BspQI GCTCTTC 1 cut(s) 162
BspT107I GGYRCC 1 cut(s) 332
BspTNI GGTCTC 1 cut(s) 98
BsrFI RCCGGY 1 cut(s) 447
BsrI ACTGG 1 cut(s) 287
BssAI RCCGGY 1 cut(s) 447
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 1 cut(s) 304
Bst2UI CCWGG 1 cut(s) 59
Bst6I CTCTTC 2 cut(s) 127, 162
BstDEI CTNAG 1 cut(s) 128
BstF5I GGATG 2 cut(s) 241, 434
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 1 cut(s) 307
BstMAI GTCTC 2 cut(s) 35, 98
BstMBI GATC 1 cut(s) 304
BstMWI GCNNNNNNNGC 1 cut(s) 422
BstNI CCWGG 1 cut(s) 59
BstNSI RCATGY 1 cut(s) 317
BstSCI CCNGG 1 cut(s) 57
BstV1I GCAGC 1 cut(s) 425
BstV2I GAAGAC 3 cut(s) 190, 369, 450
BstX2I RGATCY 1 cut(s) 304
BstYI RGATCY 1 cut(s) 304
BtgZI GCGATG 1 cut(s) 26
BtsCI GGATG 2 cut(s) 241, 434
CfoI GCGC 1 cut(s) 92
Cfr10I RCCGGY 1 cut(s) 447
Cfr13I GGNCC 1 cut(s) 450
CpoI CGGWCCG 1 cut(s) 450
CseI GACGC 1 cut(s) 353
Csp6I GTAC 1 cut(s) 317
CspAI ACCGGT 1 cut(s) 447
CspI CGGWCCG 1 cut(s) 450
CviAII CATG 1 cut(s) 314
CviJI RGCY 6 cut(s) 76, 155, 358, 401, 425, 458
CviKI_1 RGCY 6 cut(s) 76, 155, 358, 401, 425, 458
CviQI GTAC 1 cut(s) 317
DdeI CTNAG 1 cut(s) 128
DpnI GATC 1 cut(s) 306
DpnII GATC 1 cut(s) 304
Eam1104I CTCTTC 2 cut(s) 127, 162
EarI CTCTTC 2 cut(s) 127, 162
EciI GGCGGA 1 cut(s) 481
Eco31I GGTCTC 1 cut(s) 98
Eco47I GGWCC 1 cut(s) 450
Eco57I CTGAAG 1 cut(s) 94
Eco88I CYCGRG 2 cut(s) 94, 495
EcoRII CCWGG 1 cut(s) 57
FaeI CATG 1 cut(s) 317
FaiI YATR 4 cut(s) 13, 213, 284, 315
FatI CATG 1 cut(s) 313
Fnu4HI GCNGC 1 cut(s) 414
FokI GGATG 2 cut(s) 248, 441
Fsp4HI GCNGC 1 cut(s) 414
GlaI GCGC 1 cut(s) 91
GluI GCNGC 1 cut(s) 414
HapII CCGG 1 cut(s) 448
HgaI GACGC 1 cut(s) 353
HhaI GCGC 1 cut(s) 92
Hin1II CATG 1 cut(s) 317
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HindIII AAGCTT 2 cut(s) 74, 356
HinfI GANTC 1 cut(s) 176
HpaII CCGG 1 cut(s) 448
HphI GGTGA 1 cut(s) 141
Hpy166II GTNNAC 2 cut(s) 484, 505
Hpy188I TCNGA 4 cut(s) 35, 113, 409, 454
Hpy188III TCNNGA 5 cut(s) 96, 180, 247, 270, 469
Hpy8I GTNNAC 2 cut(s) 484, 505
HpyAV CCTTC 3 cut(s) 30, 118, 346
HpyCH4V TGCA 2 cut(s) 261, 413
HpyF10VI GCNNNNNNNGC 1 cut(s) 422
HpyF3I CTNAG 1 cut(s) 128
Hsp92II CATG 1 cut(s) 317
HspAI GCGC 1 cut(s) 90
Kzo9I GATC 1 cut(s) 304
LguI GCTCTTC 1 cut(s) 162
LpnPI CCDG 8 cut(s) 44, 71, 165, 193, 255, 300, 411, 461
Lsp1109I GCAGC 1 cut(s) 425
LweI GCATC 2 cut(s) 49, 400
MalI GATC 1 cut(s) 306
MboI GATC 1 cut(s) 304
MboII GAAGA 8 cut(s) 82, 144, 149, 152, 190, 374, 455, 484
MfeI CAATTG 1 cut(s) 168
MflI RGATCY 1 cut(s) 304
MluCI AATT 4 cut(s) 99, 168, 418, 461
MlyI GAGTC 1 cut(s) 185
MnlI CCTC 8 cut(s) 103, 128, 166, 229, 271, 319, 387, 433
MspI CCGG 1 cut(s) 448
MspR9I CCNGG 1 cut(s) 59
MunI CAATTG 1 cut(s) 168
Mva1269I GAATGC 1 cut(s) 263
MvaI CCWGG 1 cut(s) 59
MwoI GCNNNNNNNGC 1 cut(s) 422
NdeII GATC 1 cut(s) 304
NlaIII CATG 1 cut(s) 317
NlaIV GGNNCC 2 cut(s) 306, 334
NspI RCATGY 1 cut(s) 317
PciI ACATGT 1 cut(s) 313
PciSI GCTCTTC 1 cut(s) 162
PctI GAATGC 1 cut(s) 263
PinAI ACCGGT 1 cut(s) 447
PkrI GCNGC 1 cut(s) 415
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
PscI ACATGT 1 cut(s) 313
Psp6I CCWGG 1 cut(s) 57
PspGI CCWGG 1 cut(s) 57
PspN4I GGNNCC 2 cut(s) 306, 334
PspPI GGNCC 1 cut(s) 450
PsuI RGATCY 1 cut(s) 304
RsaI GTAC 1 cut(s) 318
RsaNI GTAC 1 cut(s) 317
Rsr2I CGGWCCG 1 cut(s) 450
RsrII CGGWCCG 1 cut(s) 450
SapI GCTCTTC 1 cut(s) 162
SatI GCNGC 1 cut(s) 414
Sau3AI GATC 1 cut(s) 304
Sau96I GGNCC 1 cut(s) 450
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 1 cut(s) 59
SfaNI GCATC 2 cut(s) 49, 400
SinI GGWCC 1 cut(s) 450
SmlI CTYRAG 1 cut(s) 220
SmoI CTYRAG 1 cut(s) 220
Sse9I AATT 4 cut(s) 99, 168, 418, 461
SsiI CCGC 1 cut(s) 492
StyD4I CCNGG 1 cut(s) 57
TasI AATT 4 cut(s) 99, 168, 418, 461
TseI GCWGC 1 cut(s) 413
TspDTI ATGAA 2 cut(s) 7, 252
VpaK11BI GGWCC 1 cut(s) 450
XapI RAATTY 2 cut(s) 418, 461
XceI RCATGY 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.