Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002558

Physical Location & Seq

Genomic Coordinates Forward (+)

6088220 .. 6093309

Gene Structure 5090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g10730.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCCTCTCAGGGAGACGCTTCTTCCTCTGGTTCTGTCACCCCTCCATATAGACATGATGTGTTTCTGAGCTTCAGAGGTAAAGATACACGTTCTGGTTTTACGTACCATCTGTACAAGGCTTTAGAGAGGGAGAAAATCAAGACGTTTTTTGATGATCGTACGCTCAAGAGAGGAGAGAATATATCAACAGCACTTCTTCAGGCAATTGAAGTTTCAAGAATTTCCGTGGTGATATGCTCCGAAAACTACGGTTCGTCAGGTTGGTGTTTGGATGAACTTGTCAGGATCCTTGAATGTCAAAAATCAAAGCAGCAGGTTGTTATTCCAGTTTTTTACAAGGTGGATCCAGCACATGTACGACATCAAATTGGTAGCTTTGGTGAAGCCCTTGCCGGGTTGAAATACAACGAGGACAAGGTTCCCAAATGGAGGGCAGCTCTTACACAAGTAGCAAATTTGTCTGGATGGACTTACGTGAACGGGTATGAATCTGATTTTATTGAGAAGATTGTTAAAGAGATAAAAGAACTGGCTGGCCTCCACGACCAAAAGAAGAAAGAAGATGTTCTCGGCTTCAACCACCAAAGCAATAAGGACTCGACTGGCCTCGACCACCAAAAGAAGAATAGAAATGGGGCGGACCTCTACAATCAGGCTGTGCTTGAAGTCCAAAATTTTTTACATGGGGCGGACGTCAACGTTAATCGGTCCTCGCTTGAAGTTGAGAATAATCTAAATGGGGCAGAGCTCTACAATCGTGCCTTTCTTGAGGTTCAGAGGAAAATAAATGGTGCGGACCTCTACAATCAGGCCTATCTTGATGTTCTGAACAAAATAAATGGAGGAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

285

Amino Acids

31.93

Weight (kDa)

7.09

Isoelectric Point (pI)

27.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	19 - 158	9.2e-53	TIR domain
TIR_2	PF13676	21 - 117	9.5e-18	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20142
fragaria_vesca	FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730
malus_domestica	MD05G1140000.v1.1
prunus_persica	Prupe.1G120200_v2.0.a1
pyrus_communis	pycom03g08420 pycom04g02910 pycom10g12010 pycom10g12080 pycom10g12100
rosa_chinensis	RchiOBHm_Chr3g0451631 RchiOBHm_Chr5g0026391 RchiOBHm_Chr7g0241711
rosa_laevigata	RLG00000004786 RLG00000004787 RLG00000029480
rosa_multiflora	Rmu_co8097864.1_g000001 Rmu_sc0001689.1_g000015 Rmu_sc0002354.1_g000038 Rmu_sc0003469.1_g000013 Rmu_sc0006326.1_g000044 Rmu_sc0038436.1_g000001 Rmu_sc0043107.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053220 Rroxscaffold_3G00218740 Rroxscaffold_3G00267480 Rroxscaffold_4G00317010 Rroxscaffold_6G00397670 Rroxscaffold_6G00397680
rosa_rugosa	Rorug01G0112600 Rorug05G0000700 Rorug06G0259600 Rorug07G0346700
rosa_samantha	Rh7AG085700
rosa_wichuraiana	Rw1G011340 Rw7G007550 Rw7G042350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	699
Acc36I	ACCTGC	1 cut(s)	307
AciI	CCGC	3 cut(s)	641, 692, 797
AclI	AACGTT	1 cut(s)	702
AclWI	GGATC	4 cut(s)	283, 296, 341, 354
AcsI	RAATTY	3 cut(s)	222, 457, 676
AcuI	CTGAAG	2 cut(s)	58, 185
AcyI	GRCGYC	1 cut(s)	696
AfaI	GTAC	4 cut(s)	107, 116, 163, 360
AfiI	CCNNNNNNNGG	2 cut(s)	396, 432
AflIII	ACRYGT	2 cut(s)	89, 355
AgsI	TTSAA	7 cut(s)	212, 219, 296, 403, 580, 668, 722
AluBI	AGCT	4 cut(s)	72, 378, 440, 751
AluI	AGCT	4 cut(s)	72, 378, 440, 751
Alw21I	GWGCWC	1 cut(s)	753
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	4 cut(s)	283, 296, 341, 354
AoxI	GGCC	4 cut(s)	3, 538, 607, 813
ApeKI	GCWGC	2 cut(s)	313, 437
ApoI	RAATTY	3 cut(s)	222, 457, 676
Asp700I	GAANNNNTTC	1 cut(s)	567
AspS9I	GGNCC	3 cut(s)	643, 711, 799
AsuC2I	CCSGG	1 cut(s)	397
AsuHPI	GGTGA	3 cut(s)	31, 244, 395
AvaII	GGWCC	3 cut(s)	643, 711, 799
BamHI	GGATCC	2 cut(s)	288, 346
BanII	GRGCYC	1 cut(s)	753
Bbv12I	GWGCWC	1 cut(s)	753
BbvI	GCAGC	2 cut(s)	325, 449
BccI	CCATC	2 cut(s)	117, 462
BcnI	CCSGG	1 cut(s)	397
BcoDI	GTCTC	1 cut(s)	9
BfuAI	ACCTGC	1 cut(s)	307
BisI	GCNGC	2 cut(s)	314, 438
BlsI	GCNGC	2 cut(s)	315, 439
Bme1390I	CCNGG	1 cut(s)	397
Bme18I	GGWCC	3 cut(s)	643, 711, 799
BmgT120I	GGNCC	3 cut(s)	643, 711, 799
BmiI	GGNNCC	3 cut(s)	290, 348, 423
BmrFI	CCNGG	1 cut(s)	397
BplI	GAGNNNNNCTC	2 cut(s)	424, 456
BpuEI	CTTGAG	2 cut(s)	152, 791
BpuMI	CCSGG	1 cut(s)	397
BsaAI	YACGTR	2 cut(s)	105, 478
BsaHI	GRCGYC	1 cut(s)	696
BsaJI	CCNNGG	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	2 cut(s)	396, 432
Bse1I	ACTGG	3 cut(s)	329, 537, 610
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	2 cut(s)	280, 473
BseLI	CCNNNNNNNGG	2 cut(s)	396, 432
BseMII	CTCAG	2 cut(s)	23, 59
BseNI	ACTGG	3 cut(s)	329, 537, 610
BseRI	GAGGAG	1 cut(s)	189
BseXI	GCAGC	2 cut(s)	325, 449
BshFI	GGCC	4 cut(s)	5, 540, 609, 815
BsiHKAI	GWGCWC	1 cut(s)	753
BsiSI	CCGG	1 cut(s)	396
BsiWI	CGTACG	1 cut(s)	161
BslI	CCNNNNNNNGG	2 cut(s)	396, 432
BsmAI	GTCTC	1 cut(s)	9
BsmBI	CGTCTC	1 cut(s)	9
BsnI	GGCC	4 cut(s)	5, 540, 609, 815
Bsp1286I	GDGCHC	1 cut(s)	753
Bsp1407I	TGTACA	1 cut(s)	114
Bsp143I	GATC	3 cut(s)	157, 288, 346
BspACI	CCGC	3 cut(s)	641, 692, 797
BspANI	GGCC	4 cut(s)	5, 540, 609, 815
BspCNI	CTCAG	2 cut(s)	22, 60
BspLI	GGNNCC	3 cut(s)	290, 348, 423
BspMI	ACCTGC	1 cut(s)	307
BspPI	GGATC	4 cut(s)	283, 296, 341, 354
BsrGI	TGTACA	1 cut(s)	114
BsrI	ACTGG	3 cut(s)	329, 537, 610
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	3 cut(s)	157, 288, 346
BssNI	GRCGYC	1 cut(s)	696
Bst4CI	ACNGT	1 cut(s)	254
BstACI	GRCGYC	1 cut(s)	696
BstAUI	TGTACA	1 cut(s)	114
BstBAI	YACGTR	2 cut(s)	105, 478
BstC8I	GCNNGC	1 cut(s)	538
BstDEI	CTNAG	2 cut(s)	9, 68
BstDSI	CCRYGG	1 cut(s)	228
BstF5I	GGATG	2 cut(s)	280, 473
BstKTI	GATC	3 cut(s)	160, 291, 349
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	3 cut(s)	157, 288, 346
BstNSI	RCATGY	1 cut(s)	359
BstSCI	CCNGG	1 cut(s)	395
BstSNI	TACGTA	1 cut(s)	105
BstV1I	GCAGC	2 cut(s)	325, 449
BstX2I	RGATCY	2 cut(s)	288, 346
BstYI	RGATCY	2 cut(s)	288, 346
BsuRI	GGCC	4 cut(s)	5, 540, 609, 815
BtgI	CCRYGG	1 cut(s)	228
BtsCI	GGATG	2 cut(s)	280, 473
BveI	ACCTGC	1 cut(s)	307
Cac8I	GCNNGC	1 cut(s)	538
Cfr13I	GGNCC	3 cut(s)	643, 711, 799
CseI	GACGC	1 cut(s)	26
Csp6I	GTAC	4 cut(s)	106, 115, 162, 359
CviAII	CATG	3 cut(s)	56, 356, 686
CviQI	GTAC	4 cut(s)	106, 115, 162, 359
DdeI	CTNAG	2 cut(s)	9, 68
DpnI	GATC	3 cut(s)	159, 290, 348
DpnII	GATC	3 cut(s)	157, 288, 346
EciI	GGCGGA	2 cut(s)	656, 707
Ecl136II	GAGCTC	1 cut(s)	751
Eco105I	TACGTA	1 cut(s)	105
Eco147I	AGGCCT	1 cut(s)	815
Eco24I	GRGCYC	1 cut(s)	753
Eco47I	GGWCC	3 cut(s)	643, 711, 799
Eco53kI	GAGCTC	1 cut(s)	751
Eco57I	CTGAAG	2 cut(s)	58, 185
EcoICRI	GAGCTC	1 cut(s)	751
EcoT38I	GRGCYC	1 cut(s)	753
Esp3I	CGTCTC	1 cut(s)	9
FaeI	CATG	3 cut(s)	59, 359, 689
FaiI	YATR	8 cut(s)	49, 51, 57, 185, 238, 357, 489, 687
FatI	CATG	3 cut(s)	55, 355, 685
Fnu4HI	GCNGC	2 cut(s)	314, 438
FokI	GGATG	2 cut(s)	287, 480
FriOI	GRGCYC	1 cut(s)	753
Fsp4HI	GCNGC	2 cut(s)	314, 438
GluI	GCNGC	2 cut(s)	314, 438
HaeIII	GGCC	4 cut(s)	5, 540, 609, 815
HapII	CCGG	1 cut(s)	396
HgaI	GACGC	1 cut(s)	26
Hin1I	GRCGYC	1 cut(s)	696
Hin1II	CATG	3 cut(s)	59, 359, 689
HincII	GTYRAC	1 cut(s)	700
HindII	GTYRAC	1 cut(s)	700
HinfI	GANTC	2 cut(s)	491, 599
HpaII	CCGG	1 cut(s)	396
HphI	GGTGA	3 cut(s)	31, 244, 395
Hpy166II	GTNNAC	2 cut(s)	481, 700
Hpy188I	TCNGA	6 cut(s)	69, 77, 244, 496, 780, 831
Hpy188III	TCNNGA	7 cut(s)	142, 169, 219, 286, 465, 770, 821
Hpy8I	GTNNAC	2 cut(s)	481, 700
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4IV	ACGT	6 cut(s)	91, 104, 146, 477, 696, 702
HpyF3I	CTNAG	2 cut(s)	9, 68
HpySE526I	ACGT	6 cut(s)	91, 104, 146, 477, 696, 702
Hsp92I	GRCGYC	1 cut(s)	696
Hsp92II	CATG	3 cut(s)	59, 359, 689
Kzo9I	GATC	3 cut(s)	157, 288, 346
LmnI	GCTCC	1 cut(s)	245
Lsp1109I	GCAGC	2 cut(s)	325, 449
MaeII	ACGT	6 cut(s)	91, 104, 146, 477, 696, 702
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	3 cut(s)	159, 290, 348
MboI	GATC	3 cut(s)	157, 288, 346
MboII	GAAGA	6 cut(s)	15, 191, 520, 568, 575, 637
MfeI	CAATTG	1 cut(s)	207
MflI	RGATCY	2 cut(s)	288, 346
MhlI	GDGCHC	1 cut(s)	753
MluCI	AATT	5 cut(s)	207, 222, 369, 457, 676
MlyI	GAGTC	1 cut(s)	593
MroXI	GAANNNNTTC	1 cut(s)	567
MseI	TTAA	2 cut(s)	516, 705
MspI	CCGG	1 cut(s)	396
MspR9I	CCNGG	1 cut(s)	397
MunI	CAATTG	1 cut(s)	207
NciI	CCSGG	1 cut(s)	397
NdeII	GATC	3 cut(s)	157, 288, 346
NlaIII	CATG	3 cut(s)	59, 359, 689
NlaIV	GGNNCC	3 cut(s)	290, 348, 423
NmeAIII	GCCGAG	1 cut(s)	552
NmuCI	GTSAC	1 cut(s)	37
NspI	RCATGY	1 cut(s)	359
PceI	AGGCCT	1 cut(s)	815
PciI	ACATGT	1 cut(s)	355
PdmI	GAANNNNTTC	1 cut(s)	567
PfeI	GAWTC	1 cut(s)	491
Pfl23II	CGTACG	1 cut(s)	161
PkrI	GCNGC	2 cut(s)	315, 439
PleI	GAGTC	1 cut(s)	593
PpsI	GAGTC	1 cut(s)	593
Ppu21I	YACGTR	2 cut(s)	105, 478
PscI	ACATGT	1 cut(s)	355
Psp124BI	GAGCTC	1 cut(s)	753
Psp1406I	AACGTT	1 cut(s)	702
PspLI	CGTACG	1 cut(s)	161
PspN4I	GGNNCC	3 cut(s)	290, 348, 423
PspPI	GGNCC	3 cut(s)	643, 711, 799
PsuI	RGATCY	2 cut(s)	288, 346
RsaI	GTAC	4 cut(s)	107, 116, 163, 360
RsaNI	GTAC	4 cut(s)	106, 115, 162, 359
SacI	GAGCTC	1 cut(s)	753
SaqAI	TTAA	2 cut(s)	516, 705
SatI	GCNGC	2 cut(s)	314, 438
Sau3AI	GATC	3 cut(s)	157, 288, 346
Sau96I	GGNCC	3 cut(s)	643, 711, 799
SchI	GAGTC	1 cut(s)	593
ScrFI	CCNGG	1 cut(s)	397
SduI	GDGCHC	1 cut(s)	753
SinI	GGWCC	3 cut(s)	643, 711, 799
SmlI	CTYRAG	2 cut(s)	167, 770
SmoI	CTYRAG	2 cut(s)	167, 770
SnaBI	TACGTA	1 cut(s)	105
Sse9I	AATT	5 cut(s)	207, 222, 369, 457, 676
SseBI	AGGCCT	1 cut(s)	815
SsiI	CCGC	3 cut(s)	641, 692, 797
SstI	GAGCTC	1 cut(s)	753
StuI	AGGCCT	1 cut(s)	815
StyD4I	CCNGG	1 cut(s)	395
TaaI	ACNGT	1 cut(s)	254
TaiI	ACGT	6 cut(s)	94, 107, 149, 480, 699, 705
TaqI	TCGA	2 cut(s)	602, 612
TaqII	GACCGA	1 cut(s)	699
TasI	AATT	5 cut(s)	207, 222, 369, 457, 676
TatI	WGTACW	1 cut(s)	114
TfiI	GAWTC	1 cut(s)	491
Tru1I	TTAA	2 cut(s)	516, 705
Tru9I	TTAA	2 cut(s)	516, 705
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	2 cut(s)	313, 437
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	2 cut(s)	291, 504
TspGWI	ACGGA	1 cut(s)	217
VpaK11BI	GGWCC	3 cut(s)	643, 711, 799
XapI	RAATTY	3 cut(s)	222, 457, 676
XceI	RCATGY	1 cut(s)	359
XmnI	GAANNNNTTC	1 cut(s)	567
ZraI	GACGTC	1 cut(s)	697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.