Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002558

Physical Location & Seq

Genomic Coordinates Reverse (-)

19379945 .. 19380621

Gene Structure 677 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00397680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGACTTCTCCTTCTTGTTCTTCTGCACCTGGCAGCTTTAAGTATGATGTCTTTCTTAGTTTTAGAGGGCAGGACACCCGCAAGACTTTTACCAGCCATCTTCATGAAGCTTTAGTTAGGGAACAAATCAATACCTACATAGATAATGAAATTGAGAGGGGAAAGGAAATTAAACCAGCCCTTCTCCAAGCAATAGAGAAATCAAAACTTTCTGTAGTCATTTTGTCACAAGACTATGCTTCTTCCACATGGTGCTTGGATGAACTTGCCCATATATTAGAATGCAAAGAAAGATATCAACAATCGGTTATACCCATTTTTTATGGGGTAGATCCATCACATGTACGGTATCAGAGGGATAGTTATGCAGCTGCATTTGTTCAACATGAAAAAGATTTCAATGACAAGCCAGACAAGGTGTTCAAGTGGAGGGATGCTTTAAGAAAAGCTTCCGACCTAGCTGGGTATGATTCACGCAACATTAGCTCCGATTCCAAATTAATTAAGAAAGTTGTGAAAGAAATTGAGAGGACGTTGAATAGCAAATGCTCAAGAGATTTGACCCCACAAGATGTTGGTATGTCCGCCGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

197

Amino Acids

22.48

Weight (kDa)

7.66

Isoelectric Point (pI)

53.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	14 - 184	2.8e-56	TIR domain
TIR_2	PF13676	17 - 129	8.6e-17	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20142
fragaria_vesca	FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730
malus_domestica	MD05G1140000.v1.1
prunus_persica	Prupe.1G120200_v2.0.a1
pyrus_communis	pycom03g08420 pycom04g02910 pycom10g12010 pycom10g12080 pycom10g12100
rosa_chinensis	RchiOBHm_Chr3g0451631 RchiOBHm_Chr5g0026391 RchiOBHm_Chr7g0241711
rosa_laevigata	RLG00000004786 RLG00000004787 RLG00000029480
rosa_multiflora	Rmu_co8097864.1_g000001 Rmu_sc0001689.1_g000015 Rmu_sc0002354.1_g000038 Rmu_sc0003469.1_g000013 Rmu_sc0006326.1_g000044 Rmu_sc0038436.1_g000001 Rmu_sc0043107.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053220 Rroxscaffold_3G00218740 Rroxscaffold_3G00267480 Rroxscaffold_4G00317010 Rroxscaffold_6G00397670 Rroxscaffold_6G00397680
rosa_rugosa	Rorug01G0112600 Rorug05G0000700 Rorug06G0259600 Rorug07G0346700
rosa_samantha	Rh7AG085700
rosa_wichuraiana	Rw1G011340 Rw7G007550 Rw7G042350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	79, 585, 588
AclWI	GGATC	1 cut(s)	326
AdeI	CACNNNGTG	1 cut(s)	252
AfaI	GTAC	1 cut(s)	345
AflIII	ACRYGT	1 cut(s)	340
AgsI	TTSAA	4 cut(s)	383, 400, 424, 538
AjnI	CCWGG	1 cut(s)	28
AluBI	AGCT	6 cut(s)	36, 110, 371, 449, 461, 486
AluI	AGCT	6 cut(s)	36, 110, 371, 449, 461, 486
AlwI	GGATC	1 cut(s)	326
ApeKI	GCWGC	3 cut(s)	33, 368, 371
AseI	ATTAAT	1 cut(s)	500
Asp700I	GAANNNNTTC	1 cut(s)	448
BbvI	GCAGC	3 cut(s)	45, 358, 380
BccI	CCATC	2 cut(s)	105, 343
BciT130I	CCWGG	1 cut(s)	30
BfaI	CTAG	1 cut(s)	458
BfmI	CTRYAG	1 cut(s)	213
BisI	GCNGC	4 cut(s)	34, 369, 372, 588
BlsI	GCNGC	4 cut(s)	35, 370, 373, 589
Bme1390I	CCNGG	1 cut(s)	30
BmrFI	CCNGG	1 cut(s)	30
BmsI	GCATC	1 cut(s)	424
BpuEI	CTTGAG	1 cut(s)	535
BsaXI	ACNNNNNCTCC	2 cut(s)	470, 500
BseBI	CCWGG	1 cut(s)	30
BseGI	GGATG	2 cut(s)	265, 439
BseXI	GCAGC	3 cut(s)	45, 358, 380
BseYI	CCCAGC	1 cut(s)	461
BsgI	GTGCAG	1 cut(s)	9
BsmI	GAATGC	1 cut(s)	287
Bsp143I	GATC	1 cut(s)	331
BspACI	CCGC	3 cut(s)	79, 585, 588
BspHI	TCATGA	1 cut(s)	103
BspPI	GGATC	1 cut(s)	326
BssMI	GATC	1 cut(s)	331
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	1 cut(s)	348
BstDEI	CTNAG	1 cut(s)	56
BstF5I	GGATG	2 cut(s)	265, 439
BstKTI	GATC	1 cut(s)	334
BstMBI	GATC	1 cut(s)	331
BstMWI	GCNNNNNNNGC	1 cut(s)	483
BstNI	CCWGG	1 cut(s)	30
BstNSI	RCATGY	1 cut(s)	344
BstSCI	CCNGG	1 cut(s)	28
BstSFI	CTRYAG	1 cut(s)	213
BstV1I	GCAGC	3 cut(s)	45, 358, 380
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BtsCI	GGATG	2 cut(s)	265, 439
CciI	TCATGA	1 cut(s)	103
Csp6I	GTAC	1 cut(s)	344
CviAII	CATG	4 cut(s)	104, 249, 341, 386
CviJI	RGCY	9 cut(s)	36, 96, 110, 179, 371, 409, 449, 461, 486
CviKI_1	RGCY	9 cut(s)	36, 96, 110, 179, 371, 409, 449, 461, 486
CviQI	GTAC	1 cut(s)	344
DdeI	CTNAG	1 cut(s)	56
DpnI	GATC	1 cut(s)	333
DpnII	GATC	1 cut(s)	331
DraIII	CACNNNGTG	1 cut(s)	252
EciI	GGCGGA	1 cut(s)	574
Eco32I	GATATC	1 cut(s)	296
EcoRII	CCWGG	1 cut(s)	28
EcoRV	GATATC	1 cut(s)	296
FaeI	CATG	4 cut(s)	107, 252, 344, 389
FalI	AAGNNNNNCTT	2 cut(s)	433, 465
FatI	CATG	4 cut(s)	103, 248, 340, 385
FauI	CCCGC	1 cut(s)	86
Fnu4HI	GCNGC	4 cut(s)	34, 369, 372, 588
FokI	GGATG	2 cut(s)	272, 446
Fsp4HI	GCNGC	4 cut(s)	34, 369, 372, 588
FspBI	CTAG	1 cut(s)	458
GluI	GCNGC	4 cut(s)	34, 369, 372, 588
GsaI	CCCAGC	1 cut(s)	465
Hin1II	CATG	4 cut(s)	107, 252, 344, 389
HindIII	AAGCTT	2 cut(s)	108, 447
HinfI	GANTC	2 cut(s)	470, 491
Hpy188I	TCNGA	3 cut(s)	354, 454, 490
Hpy188III	TCNNGA	2 cut(s)	104, 552
HpyAV	CCTTC	2 cut(s)	21, 191
HpyCH4III	ACNGT	1 cut(s)	348
HpyCH4IV	ACGT	1 cut(s)	533
HpyCH4V	TGCA	4 cut(s)	26, 285, 368, 374
HpyF10VI	GCNNNNNNNGC	1 cut(s)	483
HpyF3I	CTNAG	1 cut(s)	56
HpySE526I	ACGT	1 cut(s)	533
Hsp92II	CATG	4 cut(s)	107, 252, 344, 389
Kzo9I	GATC	1 cut(s)	331
LmnI	GCTCC	1 cut(s)	491
LpnPI	CCDG	7 cut(s)	15, 42, 56, 106, 189, 423, 447
Lsp1109I	GCAGC	3 cut(s)	45, 358, 380
LweI	GCATC	1 cut(s)	424
MaeI	CTAG	1 cut(s)	458
MaeII	ACGT	1 cut(s)	533
MaeIII	GTNAC	1 cut(s)	225
MalI	GATC	1 cut(s)	333
MboI	GATC	1 cut(s)	331
MboII	GAAGA	3 cut(s)	12, 92, 234
MflI	RGATCY	1 cut(s)	331
MluCI	AATT	5 cut(s)	150, 168, 497, 501, 522
MmeI	TCCRAC	1 cut(s)	477
MnlI	CCTC	5 cut(s)	59, 150, 348, 423, 522
MroXI	GAANNNNTTC	1 cut(s)	448
MseI	TTAA	6 cut(s)	39, 171, 440, 500, 504, 592
MslI	CAYNNNNRTG	1 cut(s)	102
MspA1I	CMGCKG	1 cut(s)	371
MspR9I	CCNGG	1 cut(s)	30
Mva1269I	GAATGC	1 cut(s)	287
MvaI	CCWGG	1 cut(s)	30
MwoI	GCNNNNNNNGC	1 cut(s)	483
NdeII	GATC	1 cut(s)	331
NlaIII	CATG	4 cut(s)	107, 252, 344, 389
NmuCI	GTSAC	1 cut(s)	225
NspI	RCATGY	1 cut(s)	344
PacI	TTAATTAA	1 cut(s)	504
PagI	TCATGA	1 cut(s)	103
PciI	ACATGT	1 cut(s)	340
PctI	GAATGC	1 cut(s)	287
PdmI	GAANNNNTTC	1 cut(s)	448
PfeI	GAWTC	2 cut(s)	470, 491
PkrI	GCNGC	4 cut(s)	35, 370, 373, 589
PscI	ACATGT	1 cut(s)	340
PshBI	ATTAAT	1 cut(s)	500
Psp6I	CCWGG	1 cut(s)	28
PspFI	CCCAGC	1 cut(s)	461
PspGI	CCWGG	1 cut(s)	28
PsuI	RGATCY	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	371
RsaI	GTAC	1 cut(s)	345
RsaNI	GTAC	1 cut(s)	344
RseI	CAYNNNNRTG	1 cut(s)	102
SaqAI	TTAA	6 cut(s)	39, 171, 440, 500, 504, 592
SatI	GCNGC	4 cut(s)	34, 369, 372, 588
Sau3AI	GATC	1 cut(s)	331
ScrFI	CCNGG	1 cut(s)	30
SfaNI	GCATC	1 cut(s)	424
SfcI	CTRYAG	1 cut(s)	213
SmiMI	CAYNNNNRTG	1 cut(s)	102
SmlI	CTYRAG	1 cut(s)	550
SmoI	CTYRAG	1 cut(s)	550
Sse9I	AATT	5 cut(s)	150, 168, 497, 501, 522
SsiI	CCGC	3 cut(s)	79, 585, 588
SspMI	CTAG	1 cut(s)	458
StyD4I	CCNGG	1 cut(s)	28
TaaI	ACNGT	1 cut(s)	348
TaiI	ACGT	1 cut(s)	536
TasI	AATT	5 cut(s)	150, 168, 497, 501, 522
TauI	GCSGC	1 cut(s)	590
TfiI	GAWTC	2 cut(s)	470, 491
Tru1I	TTAA	6 cut(s)	39, 171, 440, 500, 504, 592
Tru9I	TTAA	6 cut(s)	39, 171, 440, 500, 504, 592
TseFI	GTSAC	1 cut(s)	225
TseI	GCWGC	3 cut(s)	33, 368, 371
Tsp45I	GTSAC	1 cut(s)	225
TspDTI	ATGAA	5 cut(s)	92, 120, 162, 276, 402
VspI	ATTAAT	1 cut(s)	500
XceI	RCATGY	1 cut(s)	344
XcmI	CCANNNNNNNNNTGG	1 cut(s)	253
XmnI	GAANNNNTTC	1 cut(s)	448
XspI	CTAG	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.