Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002558

Physical Location & Seq

Genomic Coordinates Forward (+)

65978178 .. 65980268

Gene Structure 2091 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G042350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGGCTTCTCCTTCTTGTTCTTCTGCACCTGGCAGCTTTAAGCATGATGTATTTCTTAGTTTTAGAGGGGAGGACACCCGCAAGACTTTTACGAGCCATCTTTGTGCGGCTTTAGTTAGTAATCACATCAACACCTACATAGATGATGAAATCGAGAGGGGAGAGGAAATTGCACCAGCCCTTCTCCAAGCAATAGAGGCATCAAAACTTTCCGTAGTCATTTTGTCACAAGGCTATGCTTCTTCCAGATGGTGCTTGAATGAACTCGCTCATATATTGGAATTGAAGGAAAGACACCGACAATCGGTTATACCCATTTTTTATGGGGTAGATCCATCACATGTACGGAATCAGAGGGAGAGTTATGCAGCTGCATTTGTTCAACATGAGAAACATTTCAAGCCAGACAAGGTGCTCAAGTGGAGGGAGGCTTTAACCAAAGCTTCCGATCTAGCTGGGTTTGATTCAAGCAAGATTAGCCCCGATTCCAAATTAGTTGAGGAAGTTCTGAAAGTTATTCAGAAGAAGTTGAATCGCAAATACTCAAGAGATTTGACCCCACAAGATGTTGAGTTCAGCTCACGGCAACTTATCAATGGGAATGAGCCCGATAGGGCTAAAGATAATTGCTTCAAGTGTGGTGGGATAGGACATTGGCGCAGAGACTGCCCTTCAGATAATTGCTCCAAGTGTGGTGGGATAGGACATTGGGACAGAGACTGCCCTTCAGATAATTGCTTCAAGTGTGGTGGGATAGGACATTGGGACAGAGACTGCCCTTCAGTAGGTGATGAAGACAGCTATTCAGCAAATAAATGCTTCGAGTATGGTGGGATAGGACATTGGGCCGATGATAGCCCTTCAGCGAGTGATGAAGACAGCCCTTCAGCGAGTGATGAAGACAGCCCTTCAGTAGATAAATGCTTCGAGTATGGTGGGATAGGACAATGGGGTGATGATAGCCCATCAGCAAGTGATGAAGACAGCCCTTCAGCGAGTGATGAGAACAGCCCTTCAACAGATAAATGCTCTGAGTGTGGTGGGATAGGACATTGGGCCAAAGACTGCCCTTCAGATGAATGCTTCAAGTGTGGTGGGATAGGACATTACGCCAAACACTGCCCTTCACATAAATGCTTCAAGTGTGGTGGGATAGGACATTGTGCCAAAGACTGCCCTTCAAATAAATGCATCATCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

400

Amino Acids

43.95

Weight (kDa)

5.51

Isoelectric Point (pI)

55.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	14 - 183	2.4e-55	TIR domain
TIR_2	PF13676	17 - 113	1e-15	TIR domain
zf-CCHC	PF00098	209 - 225	8.7e-07	Zinc knuckle
zf-CCHC	PF00098	245 - 261	9.2e-06	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20142
fragaria_vesca	FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730
malus_domestica	MD05G1140000.v1.1
prunus_persica	Prupe.1G120200_v2.0.a1
pyrus_communis	pycom03g08420 pycom04g02910 pycom10g12010 pycom10g12080 pycom10g12100
rosa_chinensis	RchiOBHm_Chr3g0451631 RchiOBHm_Chr5g0026391 RchiOBHm_Chr7g0241711
rosa_laevigata	RLG00000004786 RLG00000004787 RLG00000029480
rosa_multiflora	Rmu_co8097864.1_g000001 Rmu_sc0001689.1_g000015 Rmu_sc0002354.1_g000038 Rmu_sc0003469.1_g000013 Rmu_sc0006326.1_g000044 Rmu_sc0038436.1_g000001 Rmu_sc0043107.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053220 Rroxscaffold_3G00218740 Rroxscaffold_3G00267480 Rroxscaffold_4G00317010 Rroxscaffold_6G00397670 Rroxscaffold_6G00397680
rosa_rugosa	Rorug01G0112600 Rorug05G0000700 Rorug06G0259600 Rorug07G0346700
rosa_samantha	Rh7AG085700
rosa_wichuraiana	Rw1G011340 Rw7G007550 Rw7G042350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	79, 107
AclWI	GGATC	1 cut(s)	326
AcuI	CTGAAG	8 cut(s)	657, 711, 765, 846, 870, 894, 975, 1056
AfaI	GTAC	1 cut(s)	345
AfiI	CCNNNNNNNGG	2 cut(s)	304, 785
AflIII	ACRYGT	1 cut(s)	340
AjnI	CCWGG	1 cut(s)	28
AluBI	AGCT	6 cut(s)	36, 371, 443, 455, 579, 801
AluI	AGCT	6 cut(s)	36, 371, 443, 455, 579, 801
Alw21I	GWGCWC	1 cut(s)	417
Alw26I	GTCTC	3 cut(s)	657, 711, 765
AlwI	GGATC	1 cut(s)	326
AlwNI	CAGNNNCTG	3 cut(s)	666, 720, 774
AoxI	GGCC	2 cut(s)	846, 1056
ApeKI	GCWGC	3 cut(s)	33, 368, 371
Asp700I	GAANNNNTTC	1 cut(s)	395
AspLEI	GCGC	1 cut(s)	660
AspS9I	GGNCC	2 cut(s)	846, 1056
AsuHPI	GGTGA	2 cut(s)	800, 965
BanII	GRGCYC	1 cut(s)	609
BbsI	GAAGAC	4 cut(s)	801, 882, 906, 987
Bbv12I	GWGCWC	1 cut(s)	417
BbvI	GCAGC	3 cut(s)	45, 358, 380
BccI	CCATC	4 cut(s)	105, 243, 343, 973
BceAI	ACGGC	1 cut(s)	599
BciT130I	CCWGG	1 cut(s)	30
BcoDI	GTCTC	3 cut(s)	657, 711, 765
BfaI	CTAG	1 cut(s)	452
BisI	GCNGC	4 cut(s)	34, 108, 369, 372
BlsI	GCNGC	4 cut(s)	35, 109, 370, 373
Bme1390I	CCNGG	1 cut(s)	30
BmgT120I	GGNCC	2 cut(s)	846, 1056
BmrFI	CCNGG	1 cut(s)	30
BmsI	GCATC	1 cut(s)	209
BpiI	GAAGAC	4 cut(s)	801, 882, 906, 987
BplI	GAGNNNNNCTC	2 cut(s)	563, 595
BpuEI	CTTGAG	2 cut(s)	401, 529
Bsc4I	CCNNNNNNNGG	2 cut(s)	304, 785
BseBI	CCWGG	1 cut(s)	30
BseLI	CCNNNNNNNGG	2 cut(s)	304, 785
BseMII	CTCAG	1 cut(s)	1023
BseXI	GCAGC	3 cut(s)	45, 358, 380
BseYI	CCCAGC	1 cut(s)	455
BsgI	GTGCAG	1 cut(s)	9
BshFI	GGCC	2 cut(s)	848, 1058
BsiHKAI	GWGCWC	1 cut(s)	417
BslFI	GGGAC	2 cut(s)	725, 779
BslI	CCNNNNNNNGG	2 cut(s)	304, 785
BsmAI	GTCTC	3 cut(s)	657, 711, 765
BsmFI	GGGAC	2 cut(s)	725, 779
BsmI	GAATGC	1 cut(s)	1085
BsnI	GGCC	2 cut(s)	848, 1058
Bsp1286I	GDGCHC	2 cut(s)	417, 609
Bsp143I	GATC	2 cut(s)	331, 448
BspACI	CCGC	2 cut(s)	79, 107
BspANI	GGCC	2 cut(s)	848, 1058
BspCNI	CTCAG	1 cut(s)	1024
BspPI	GGATC	1 cut(s)	326
BssMI	GATC	2 cut(s)	331, 448
Bst2UI	CCWGG	1 cut(s)	30
BstAPI	GCANNNNNTGC	1 cut(s)	666
BstDEI	CTNAG	2 cut(s)	56, 1032
BstENI	CCTNNNNNAGG	1 cut(s)	783
BstHHI	GCGC	1 cut(s)	660
BstKTI	GATC	2 cut(s)	334, 451
BstMAI	GTCTC	3 cut(s)	657, 711, 765
BstMBI	GATC	2 cut(s)	331, 448
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 477, 666
BstNI	CCWGG	1 cut(s)	30
BstNSI	RCATGY	1 cut(s)	344
BstSCI	CCNGG	1 cut(s)	28
BstV1I	GCAGC	3 cut(s)	45, 358, 380
BstV2I	GAAGAC	4 cut(s)	801, 882, 906, 987
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BsuRI	GGCC	2 cut(s)	848, 1058
BtsI	GCAGTG	1 cut(s)	1117
BtsIMutI	CAGTG	1 cut(s)	1117
CaiI	CAGNNNCTG	3 cut(s)	666, 720, 774
CfoI	GCGC	1 cut(s)	660
Cfr13I	GGNCC	2 cut(s)	846, 1056
Csp6I	GTAC	1 cut(s)	344
CviAII	CATG	3 cut(s)	44, 341, 386
CviQI	GTAC	1 cut(s)	344
DdeI	CTNAG	2 cut(s)	56, 1032
DpnI	GATC	2 cut(s)	333, 450
DpnII	GATC	2 cut(s)	331, 448
Eco24I	GRGCYC	1 cut(s)	609
Eco57I	CTGAAG	8 cut(s)	657, 711, 765, 846, 870, 894, 975, 1056
EcoNI	CCTNNNNNAGG	1 cut(s)	783
EcoRII	CCWGG	1 cut(s)	28
EcoT22I	ATGCAT	1 cut(s)	1193
EcoT38I	GRGCYC	1 cut(s)	609
FaeI	CATG	3 cut(s)	47, 344, 389
FaqI	GGGAC	2 cut(s)	725, 779
FatI	CATG	3 cut(s)	43, 340, 385
FauI	CCCGC	1 cut(s)	86
Fnu4HI	GCNGC	4 cut(s)	34, 108, 369, 372
FriOI	GRGCYC	1 cut(s)	609
Fsp4HI	GCNGC	4 cut(s)	34, 108, 369, 372
FspBI	CTAG	1 cut(s)	452
GlaI	GCGC	1 cut(s)	659
GluI	GCNGC	4 cut(s)	34, 108, 369, 372
GsaI	CCCAGC	1 cut(s)	459
HaeIII	GGCC	2 cut(s)	848, 1058
HhaI	GCGC	1 cut(s)	660
Hin1II	CATG	3 cut(s)	47, 344, 389
Hin6I	GCGC	1 cut(s)	658
HinP1I	GCGC	1 cut(s)	658
HindIII	AAGCTT	1 cut(s)	441
HinfI	GANTC	4 cut(s)	349, 464, 485, 532
HphI	GGTGA	2 cut(s)	800, 965
Hpy188I	TCNGA	8 cut(s)	354, 448, 510, 522, 676, 730, 1033, 1075
Hpy188III	TCNNGA	3 cut(s)	154, 246, 546
HpyCH4V	TGCA	5 cut(s)	26, 173, 368, 374, 1191
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 477, 666
HpyF3I	CTNAG	2 cut(s)	56, 1032
Hsp92II	CATG	3 cut(s)	47, 344, 389
HspAI	GCGC	1 cut(s)	658
Kzo9I	GATC	2 cut(s)	331, 448
LmnI	GCTCC	1 cut(s)	689
LpnPI	CCDG	7 cut(s)	15, 42, 189, 259, 417, 441, 1183
Lsp1109I	GCAGC	3 cut(s)	45, 358, 380
LweI	GCATC	1 cut(s)	209
MaeI	CTAG	1 cut(s)	452
MaeIII	GTNAC	1 cut(s)	225
MalI	GATC	2 cut(s)	333, 450
MboI	GATC	2 cut(s)	331, 448
MboII	GAAGA	7 cut(s)	12, 234, 535, 806, 887, 911, 992
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	2 cut(s)	417, 609
MluCI	AATT	6 cut(s)	168, 281, 491, 625, 679, 733
MnlI	CCTC	9 cut(s)	59, 64, 150, 157, 190, 348, 417, 421, 493
Mph1103I	ATGCAT	1 cut(s)	1193
MroXI	GAANNNNTTC	1 cut(s)	395
MseI	TTAA	2 cut(s)	39, 434
MslI	CAYNNNNRTG	2 cut(s)	102, 1132
MspA1I	CMGCKG	1 cut(s)	371
MspR9I	CCNGG	1 cut(s)	30
Mva1269I	GAATGC	1 cut(s)	1085
MvaI	CCWGG	1 cut(s)	30
MwoI	GCNNNNNNNGC	3 cut(s)	197, 477, 666
NdeII	GATC	2 cut(s)	331, 448
NlaIII	CATG	3 cut(s)	47, 344, 389
NmuCI	GTSAC	1 cut(s)	225
NsiI	ATGCAT	1 cut(s)	1193
NspI	RCATGY	1 cut(s)	344
PciI	ACATGT	1 cut(s)	340
PctI	GAATGC	1 cut(s)	1085
PdmI	GAANNNNTTC	1 cut(s)	395
PfeI	GAWTC	4 cut(s)	349, 464, 485, 532
PkrI	GCNGC	4 cut(s)	35, 109, 370, 373
PscI	ACATGT	1 cut(s)	340
Psp6I	CCWGG	1 cut(s)	28
PspFI	CCCAGC	1 cut(s)	455
PspGI	CCWGG	1 cut(s)	28
PspPI	GGNCC	2 cut(s)	846, 1056
PstNI	CAGNNNCTG	3 cut(s)	666, 720, 774
PsuI	RGATCY	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	371
RsaI	GTAC	1 cut(s)	345
RsaNI	GTAC	1 cut(s)	344
RseI	CAYNNNNRTG	2 cut(s)	102, 1132
SaqAI	TTAA	2 cut(s)	39, 434
SatI	GCNGC	4 cut(s)	34, 108, 369, 372
Sau3AI	GATC	2 cut(s)	331, 448
Sau96I	GGNCC	2 cut(s)	846, 1056
ScrFI	CCNGG	1 cut(s)	30
SduI	GDGCHC	2 cut(s)	417, 609
SfaNI	GCATC	1 cut(s)	209
SmiMI	CAYNNNNRTG	2 cut(s)	102, 1132
SmlI	CTYRAG	2 cut(s)	416, 544
SmoI	CTYRAG	2 cut(s)	416, 544
Sse9I	AATT	6 cut(s)	168, 281, 491, 625, 679, 733
SsiI	CCGC	2 cut(s)	79, 107
SspMI	CTAG	1 cut(s)	452
StyD4I	CCNGG	1 cut(s)	28
TaqI	TCGA	3 cut(s)	153, 822, 927
TasI	AATT	6 cut(s)	168, 281, 491, 625, 679, 733
TauI	GCSGC	1 cut(s)	110
TfiI	GAWTC	4 cut(s)	349, 464, 485, 532
Tru1I	TTAA	2 cut(s)	39, 434
Tru9I	TTAA	2 cut(s)	39, 434
TscAI	CASTG	1 cut(s)	1124
TseFI	GTSAC	1 cut(s)	225
TseI	GCWGC	3 cut(s)	33, 368, 371
Tsp45I	GTSAC	1 cut(s)	225
TspDTI	ATGAA	7 cut(s)	162, 276, 807, 888, 912, 993, 1092
TspGWI	ACGGA	2 cut(s)	202, 361
TspRI	CASTG	1 cut(s)	1124
XagI	CCTNNNNNAGG	1 cut(s)	783
XceI	RCATGY	1 cut(s)	344
XmnI	GAANNNNTTC	1 cut(s)	395
XspI	CTAG	1 cut(s)	452
Zsp2I	ATGCAT	1 cut(s)	1193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.