Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001689.1

Orthogroup ID

OG0002558

Physical Location & Seq

Genomic Coordinates Reverse (-)

93059 .. 93553

Gene Structure 495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001689.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atggctgctgcttcttcttgctctgatatcatccctcgggataagtatgatgtatttcttagtttcaaaggcgaggacacccggaatacttttaccagccatctttatgaggctttatgtcggaacaaaatccgaacttacaaagatgatgaggaactggagagaggagatgaaatctcacgtgcccttctcaaagcaatcaacgaatcgaagctctcagttatcattttcttcaaaaactatgcttcttctacatggtgcttggatgaacttgtgcacaaactcgaatgcagatgcagagataaacagtttgttatacccatcttctacggcgtagatccatcacatgtacgcagaaaattggggagttatgcatatgcatttgttaaacacgaggaacgtttcaaggacaatccgaacaaggtgctcaggtggagacatgctttgacaatagcagccaatatatctgggtttgattcccaaagtgttaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

164

Amino Acids

19.09

Weight (kDa)

8.78

Isoelectric Point (pI)

48.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20142
fragaria_vesca	FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730
malus_domestica	MD05G1140000.v1.1
prunus_persica	Prupe.1G120200_v2.0.a1
pyrus_communis	pycom03g08420 pycom04g02910 pycom10g12010 pycom10g12080 pycom10g12100
rosa_chinensis	RchiOBHm_Chr3g0451631 RchiOBHm_Chr5g0026391 RchiOBHm_Chr7g0241711
rosa_laevigata	RLG00000004786 RLG00000004787 RLG00000029480
rosa_multiflora	Rmu_co8097864.1_g000001 Rmu_sc0001689.1_g000015 Rmu_sc0002354.1_g000038 Rmu_sc0003469.1_g000013 Rmu_sc0006326.1_g000044 Rmu_sc0038436.1_g000001 Rmu_sc0043107.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053220 Rroxscaffold_3G00218740 Rroxscaffold_3G00267480 Rroxscaffold_4G00317010 Rroxscaffold_6G00397670 Rroxscaffold_6G00397680
rosa_rugosa	Rorug01G0112600 Rorug05G0000700 Rorug06G0259600 Rorug07G0346700
rosa_samantha	Rh7AG085700
rosa_wichuraiana	Rw1G011340 Rw7G007550 Rw7G042350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	400
AclWI	GGATC	1 cut(s)	332
AcvI	CACGTG	1 cut(s)	182
AfaI	GTAC	1 cut(s)	351
AflIII	ACRYGT	1 cut(s)	346
AgsI	TTSAA	3 cut(s)	67, 235, 406
AluBI	AGCT	1 cut(s)	214
AluI	AGCT	1 cut(s)	214
Alw21I	GWGCWC	2 cut(s)	279, 429
Alw26I	GTCTC	1 cut(s)	430
Alw44I	GTGCAC	1 cut(s)	275
AlwI	GGATC	1 cut(s)	332
Ama87I	CYCGRG	1 cut(s)	36
ApaLI	GTGCAC	1 cut(s)	275
ApeKI	GCWGC	3 cut(s)	5, 8, 455
AsuC2I	CCSGG	1 cut(s)	82
AvaI	CYCGRG	1 cut(s)	36
BaeGI	GKGCMC	2 cut(s)	187, 279
BauI	CACGAG	1 cut(s)	392
BbrPI	CACGTG	1 cut(s)	182
Bbv12I	GWGCWC	2 cut(s)	279, 429
BbvI	GCAGC	1 cut(s)	467
BccI	CCATC	3 cut(s)	108, 329, 349
BceAI	ACGGC	1 cut(s)	346
BcgI	CGANNNNNNTGC	2 cut(s)	406, 440
BcnI	CCSGG	1 cut(s)	82
BcoDI	GTCTC	1 cut(s)	430
BisI	GCNGC	3 cut(s)	6, 9, 456
BlsI	GCNGC	3 cut(s)	7, 10, 457
Bme1390I	CCNGG	1 cut(s)	82
BmeT110I	CYCGRG	1 cut(s)	36
BmrFI	CCNGG	1 cut(s)	82
BmsI	GCATC	1 cut(s)	284
BpmI	CTGGAG	1 cut(s)	179
Bpu10I	CCTNAGC	1 cut(s)	428
BpuMI	CCSGG	1 cut(s)	82
BsaAI	YACGTR	1 cut(s)	182
BsaJI	CCNNGG	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	162
BseDI	CCNNGG	1 cut(s)	35
BseGI	GGATG	2 cut(s)	30, 271
BseMII	CTCAG	2 cut(s)	231, 442
BseNI	ACTGG	1 cut(s)	162
BseRI	GAGGAG	1 cut(s)	180
BseSI	GKGCMC	2 cut(s)	187, 279
BseXI	GCAGC	1 cut(s)	467
BsiHKAI	GWGCWC	2 cut(s)	279, 429
BsiHKCI	CYCGRG	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	82
BsmAI	GTCTC	1 cut(s)	430
BsmI	GAATGC	1 cut(s)	293
BsoBI	CYCGRG	1 cut(s)	36
Bsp1286I	GDGCHC	3 cut(s)	187, 279, 429
Bsp143I	GATC	1 cut(s)	337
BspCNI	CTCAG	2 cut(s)	230, 441
BspPI	GGATC	1 cut(s)	332
BsrI	ACTGG	1 cut(s)	162
BssECI	CCNNGG	1 cut(s)	35
BssMI	GATC	1 cut(s)	337
BssSI	CACGAG	1 cut(s)	392
Bst2BI	CACGAG	1 cut(s)	392
Bst4CI	ACNGT	1 cut(s)	309
BstBAI	YACGTR	1 cut(s)	182
BstDEI	CTNAG	3 cut(s)	59, 217, 428
BstF5I	GGATG	2 cut(s)	30, 271
BstKTI	GATC	1 cut(s)	340
BstMAI	GTCTC	1 cut(s)	430
BstMBI	GATC	1 cut(s)	337
BstNSI	RCATGY	2 cut(s)	350, 443
BstSCI	CCNGG	1 cut(s)	80
BstSLI	GKGCMC	2 cut(s)	187, 279
BstV1I	GCAGC	1 cut(s)	467
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
BtsCI	GGATG	2 cut(s)	30, 271
Csp6I	GTAC	1 cut(s)	350
CviAII	CATG	3 cut(s)	255, 347, 440
CviJI	RGCY	5 cut(s)	5, 99, 113, 214, 458
CviKI_1	RGCY	5 cut(s)	5, 99, 113, 214, 458
CviQI	GTAC	1 cut(s)	350
DdeI	CTNAG	3 cut(s)	59, 217, 428
DpnI	GATC	1 cut(s)	339
DpnII	GATC	1 cut(s)	337
Eco32I	GATATC	1 cut(s)	28
Eco72I	CACGTG	1 cut(s)	182
Eco88I	CYCGRG	1 cut(s)	36
EcoRV	GATATC	1 cut(s)	28
EcoT22I	ATGCAT	2 cut(s)	376, 382
FaeI	CATG	3 cut(s)	258, 350, 443
FatI	CATG	3 cut(s)	254, 346, 439
FauNDI	CATATG	1 cut(s)	376
Fnu4HI	GCNGC	3 cut(s)	6, 9, 456
FokI	GGATG	2 cut(s)	17, 278
Fsp4HI	GCNGC	3 cut(s)	6, 9, 456
GluI	GCNGC	3 cut(s)	6, 9, 456
GsuI	CTGGAG	1 cut(s)	179
HapII	CCGG	1 cut(s)	82
Hin1II	CATG	3 cut(s)	258, 350, 443
HinfI	GANTC	2 cut(s)	206, 476
HpaII	CCGG	1 cut(s)	82
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188I	TCNGA	4 cut(s)	25, 123, 134, 417
Hpy188III	TCNNGA	1 cut(s)	38
Hpy8I	GTNNAC	1 cut(s)	277
HpyAV	CCTTC	1 cut(s)	197
HpyCH4III	ACNGT	1 cut(s)	309
HpyCH4IV	ACGT	2 cut(s)	181, 400
HpyCH4V	TGCA	5 cut(s)	277, 291, 297, 374, 380
HpyF3I	CTNAG	3 cut(s)	59, 217, 428
HpySE526I	ACGT	2 cut(s)	181, 400
Hsp92II	CATG	3 cut(s)	258, 350, 443
Kzo9I	GATC	1 cut(s)	337
LpnPI	CCDG	5 cut(s)	95, 109, 143, 415, 453
Lsp1109I	GCAGC	1 cut(s)	467
LweI	GCATC	1 cut(s)	284
MaeII	ACGT	2 cut(s)	181, 400
MalI	GATC	1 cut(s)	339
MboI	GATC	1 cut(s)	337
MboII	GAAGA	4 cut(s)	6, 223, 240, 316
MflI	RGATCY	1 cut(s)	337
MhlI	GDGCHC	3 cut(s)	187, 279, 429
MluCI	AATT	1 cut(s)	359
MmeI	TCCRAC	1 cut(s)	101
MnlI	CCTC	6 cut(s)	45, 67, 103, 145, 158, 388
Mph1103I	ATGCAT	2 cut(s)	376, 382
MseI	TTAA	1 cut(s)	387
MslI	CAYNNNNRTG	1 cut(s)	105
MspI	CCGG	1 cut(s)	82
MspR9I	CCNGG	1 cut(s)	82
Mva1269I	GAATGC	1 cut(s)	293
NciI	CCSGG	1 cut(s)	82
NdeI	CATATG	1 cut(s)	376
NdeII	GATC	1 cut(s)	337
NlaIII	CATG	3 cut(s)	258, 350, 443
NsiI	ATGCAT	2 cut(s)	376, 382
NspI	RCATGY	2 cut(s)	350, 443
PciI	ACATGT	1 cut(s)	346
PctI	GAATGC	1 cut(s)	293
PfeI	GAWTC	2 cut(s)	206, 476
PkrI	GCNGC	3 cut(s)	7, 10, 457
PmaCI	CACGTG	1 cut(s)	182
PmlI	CACGTG	1 cut(s)	182
Ppu21I	YACGTR	1 cut(s)	182
PscI	ACATGT	1 cut(s)	346
Psp1406I	AACGTT	1 cut(s)	400
PspCI	CACGTG	1 cut(s)	182
PsuI	RGATCY	1 cut(s)	337
RsaI	GTAC	1 cut(s)	351
RsaNI	GTAC	1 cut(s)	350
RseI	CAYNNNNRTG	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	3 cut(s)	6, 9, 456
Sau3AI	GATC	1 cut(s)	337
ScrFI	CCNGG	1 cut(s)	82
SduI	GDGCHC	3 cut(s)	187, 279, 429
SetI	ASST	6 cut(s)	184, 216, 403, 426, 434, 494
SfaNI	GCATC	1 cut(s)	284
SmiMI	CAYNNNNRTG	1 cut(s)	105
Sse9I	AATT	1 cut(s)	359
StyD4I	CCNGG	1 cut(s)	80
TaaI	ACNGT	1 cut(s)	309
TaiI	ACGT	2 cut(s)	184, 403
TaqI	TCGA	2 cut(s)	209, 285
TasI	AATT	1 cut(s)	359
TfiI	GAWTC	2 cut(s)	206, 476
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TseI	GCWGC	3 cut(s)	5, 8, 455
TspDTI	ATGAA	2 cut(s)	186, 282
VneI	GTGCAC	1 cut(s)	275
XceI	RCATGY	2 cut(s)	350, 443
Zsp2I	ATGCAT	2 cut(s)	376, 382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.