Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002558

Physical Location & Seq

Genomic Coordinates Reverse (-)

15675565 .. 15676101

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g12080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGAGGTGATTGGGACTTCTTCTTCTGGTGCTGCTGATTCTGGTACTGCTGTTGATGATGTTAATATCCCCCCTCTTCGAGAAAAGCATGATGTGTTTATTAGTTTCAGAGGTGAGGACACCCGCCCTAGTTTTACCAGCCATCTTTATGATGCCTTACTTCGCAAGAAAATCGAAACATACATAGACTACAAGCTGACGATAGGAGACGAAATTGGACCCGCCCTACTAAAAGCAATAGAGCAATCAAGGCTTTCGGTGATCATTTTCTCCAAAAACTATGCGTCTTCCACATGGTGCTTGATTGAACTTGTTCATATACTCAAATGCAGAAAGAAAAATGGCCAGATGGTTGTACCCATTTTTTACGACATCAGTCCATCAGAAGTACGAAAACAAGAGGGGAGTTATGCAGATGCATTTGCTGAACTTGAAAATCGTTTCAAGGACCGTATGGATAAGGTGATCGAGTGGAAAGATGCTTTGGTGGAAGCAACCGGTTTATGTGGGTTTGATTATTCAAACAAAAAAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 NB-ARC TIR

Protein Analysis

179

Amino Acids

20.03

Weight (kDa)

5.68

Isoelectric Point (pI)

49.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	29 - 176	1.7e-48	TIR domain
TIR_2	PF13676	32 - 146	6.3e-16	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20142
fragaria_vesca	FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730
malus_domestica	MD05G1140000.v1.1
prunus_persica	Prupe.1G120200_v2.0.a1
pyrus_communis	pycom03g08420 pycom04g02910 pycom10g12010 pycom10g12080 pycom10g12100
rosa_chinensis	RchiOBHm_Chr3g0451631 RchiOBHm_Chr5g0026391 RchiOBHm_Chr7g0241711
rosa_laevigata	RLG00000004786 RLG00000004787 RLG00000029480
rosa_multiflora	Rmu_co8097864.1_g000001 Rmu_sc0001689.1_g000015 Rmu_sc0002354.1_g000038 Rmu_sc0003469.1_g000013 Rmu_sc0006326.1_g000044 Rmu_sc0038436.1_g000001 Rmu_sc0043107.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053220 Rroxscaffold_3G00218740 Rroxscaffold_3G00267480 Rroxscaffold_4G00317010 Rroxscaffold_6G00397670 Rroxscaffold_6G00397680
rosa_rugosa	Rorug01G0112600 Rorug05G0000700 Rorug06G0259600 Rorug07G0346700
rosa_samantha	Rh7AG085700
rosa_wichuraiana	Rw1G011340 Rw7G007550 Rw7G042350

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	124, 222
AcoI	YGGCCR	1 cut(s)	343
AdeI	CACNNNGTG	1 cut(s)	297
AfaI	GTAC	3 cut(s)	46, 357, 390
AgeI	ACCGGT	1 cut(s)	497
AgsI	TTSAA	4 cut(s)	308, 434, 445, 522
AjuI	GAANNNNNNNTTGG	2 cut(s)	467, 499
AluBI	AGCT	1 cut(s)	196
AluI	AGCT	1 cut(s)	196
Alw26I	GTCTC	1 cut(s)	201
AoxI	GGCC	1 cut(s)	343
ApeKI	GCWGC	1 cut(s)	32
AsiGI	ACCGGT	1 cut(s)	497
Asp700I	GAANNNNTTC	1 cut(s)	312
AspS9I	GGNCC	2 cut(s)	218, 448
AsuHPI	GGTGA	4 cut(s)	19, 125, 271, 475
AvaII	GGWCC	2 cut(s)	218, 448
BaeI	ACNNNNGTAYC	2 cut(s)	36, 69
BalI	TGGCCA	1 cut(s)	345
BbsI	GAAGAC	1 cut(s)	279
BbvI	GCAGC	1 cut(s)	19
BccI	CCATC	3 cut(s)	150, 343, 388
BcgI	CGANNNNNNTGC	2 cut(s)	154, 188
BclI	TGATCA	1 cut(s)	261
BcoDI	GTCTC	1 cut(s)	201
BfaI	CTAG	1 cut(s)	129
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
Bme18I	GGWCC	2 cut(s)	218, 448
BmgT120I	GGNCC	2 cut(s)	218, 448
BmiI	GGNNCC	1 cut(s)	220
BmsI	GCATC	3 cut(s)	142, 406, 469
BoxI	GACNNNNGTC	1 cut(s)	375
BpiI	GAAGAC	1 cut(s)	279
BsaWI	WCCGGW	1 cut(s)	497
Bse118I	RCCGGY	1 cut(s)	497
BseXI	GCAGC	1 cut(s)	19
BshFI	GGCC	1 cut(s)	345
BshTI	ACCGGT	1 cut(s)	497
BsiSI	CCGG	1 cut(s)	498
BslFI	GGGAC	1 cut(s)	28
BsmAI	GTCTC	1 cut(s)	201
BsmBI	CGTCTC	1 cut(s)	201
BsmFI	GGGAC	1 cut(s)	28
BsnI	GGCC	1 cut(s)	345
Bsp143I	GATC	2 cut(s)	261, 465
BspACI	CCGC	2 cut(s)	124, 222
BspANI	GGCC	1 cut(s)	345
BspLI	GGNNCC	1 cut(s)	220
BsrFI	RCCGGY	1 cut(s)	497
BssAI	RCCGGY	1 cut(s)	497
BssMI	GATC	2 cut(s)	261, 465
Bst4CI	ACNGT	1 cut(s)	452
Bst6I	CTCTTC	1 cut(s)	81
BstKTI	GATC	2 cut(s)	264, 468
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	2 cut(s)	261, 465
BstMWI	GCNNNNNNNGC	1 cut(s)	250
BstPAI	GACNNNNGTC	1 cut(s)	375
BstV1I	GCAGC	1 cut(s)	19
BstV2I	GAAGAC	1 cut(s)	279
BsuRI	GGCC	1 cut(s)	345
Cfr10I	RCCGGY	1 cut(s)	497
Cfr13I	GGNCC	2 cut(s)	218, 448
CseI	GACGC	1 cut(s)	273
Csp6I	GTAC	3 cut(s)	45, 356, 389
CspAI	ACCGGT	1 cut(s)	497
CviAII	CATG	2 cut(s)	89, 294
CviJI	RGCY	4 cut(s)	141, 196, 253, 345
CviKI_1	RGCY	4 cut(s)	141, 196, 253, 345
CviQI	GTAC	3 cut(s)	45, 356, 389
DpnI	GATC	2 cut(s)	263, 467
DpnII	GATC	2 cut(s)	261, 465
DraIII	CACNNNGTG	1 cut(s)	297
EaeI	YGGCCR	1 cut(s)	343
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
Eco47I	GGWCC	2 cut(s)	218, 448
EcoT22I	ATGCAT	1 cut(s)	421
Esp3I	CGTCTC	1 cut(s)	201
FaeI	CATG	2 cut(s)	92, 297
FaqI	GGGAC	1 cut(s)	28
FatI	CATG	2 cut(s)	88, 293
FauI	CCCGC	2 cut(s)	131, 229
FbaI	TGATCA	1 cut(s)	261
Fnu4HI	GCNGC	1 cut(s)	33
Fsp4HI	GCNGC	1 cut(s)	33
FspBI	CTAG	1 cut(s)	129
GluI	GCNGC	1 cut(s)	33
HaeIII	GGCC	1 cut(s)	345
HapII	CCGG	1 cut(s)	498
HgaI	GACGC	1 cut(s)	273
Hin1II	CATG	2 cut(s)	92, 297
HinfI	GANTC	1 cut(s)	38
HpaII	CCGG	1 cut(s)	498
HphI	GGTGA	4 cut(s)	19, 125, 271, 475
Hpy188I	TCNGA	2 cut(s)	110, 385
Hpy188III	TCNNGA	1 cut(s)	80
HpyCH4III	ACNGT	1 cut(s)	452
HpyCH4V	TGCA	3 cut(s)	330, 413, 419
HpyF10VI	GCNNNNNNNGC	1 cut(s)	250
Hsp92II	CATG	2 cut(s)	92, 297
Ksp22I	TGATCA	1 cut(s)	261
Kzo9I	GATC	2 cut(s)	261, 465
LpnPI	CCDG	5 cut(s)	12, 27, 151, 359, 511
Lsp1109I	GCAGC	1 cut(s)	19
LweI	GCATC	3 cut(s)	142, 406, 469
MaeI	CTAG	1 cut(s)	129
MalI	GATC	2 cut(s)	263, 467
MboI	GATC	2 cut(s)	261, 465
MboII	GAAGA	4 cut(s)	12, 15, 68, 279
MlsI	TGGCCA	1 cut(s)	345
MluCI	AATT	1 cut(s)	213
MluNI	TGGCCA	1 cut(s)	345
MnlI	CCTC	4 cut(s)	84, 104, 109, 394
Mox20I	TGGCCA	1 cut(s)	345
Mph1103I	ATGCAT	1 cut(s)	421
MroXI	GAANNNNTTC	1 cut(s)	312
MscI	TGGCCA	1 cut(s)	345
MseI	TTAA	1 cut(s)	63
MslI	CAYNNNNRTG	1 cut(s)	147
Msp20I	TGGCCA	1 cut(s)	345
MspI	CCGG	1 cut(s)	498
MwoI	GCNNNNNNNGC	1 cut(s)	250
NdeII	GATC	2 cut(s)	261, 465
NlaIII	CATG	2 cut(s)	92, 297
NlaIV	GGNNCC	1 cut(s)	220
NsiI	ATGCAT	1 cut(s)	421
PdmI	GAANNNNTTC	1 cut(s)	312
PfeI	GAWTC	1 cut(s)	38
PinAI	ACCGGT	1 cut(s)	497
PkrI	GCNGC	1 cut(s)	34
PshAI	GACNNNNGTC	1 cut(s)	375
PspN4I	GGNNCC	1 cut(s)	220
PspPI	GGNCC	2 cut(s)	218, 448
RsaI	GTAC	3 cut(s)	46, 357, 390
RsaNI	GTAC	3 cut(s)	45, 356, 389
RseI	CAYNNNNRTG	1 cut(s)	147
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	2 cut(s)	261, 465
Sau96I	GGNCC	2 cut(s)	218, 448
SetI	ASST	4 cut(s)	9, 115, 198, 465
SfaNI	GCATC	3 cut(s)	142, 406, 469
SinI	GGWCC	2 cut(s)	218, 448
SmiMI	CAYNNNNRTG	1 cut(s)	147
Sse9I	AATT	1 cut(s)	213
SsiI	CCGC	2 cut(s)	124, 222
SspMI	CTAG	1 cut(s)	129
TaaI	ACNGT	1 cut(s)	452
TaqI	TCGA	3 cut(s)	79, 174, 468
TasI	AATT	1 cut(s)	213
TfiI	GAWTC	1 cut(s)	38
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TseI	GCWGC	1 cut(s)	32
TspDTI	ATGAA	1 cut(s)	305
VpaK11BI	GGWCC	2 cut(s)	218, 448
XmnI	GAANNNNTTC	1 cut(s)	312
XspI	CTAG	1 cut(s)	129
Zsp2I	ATGCAT	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.