Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002558

Physical Location & Seq

Genomic Coordinates Reverse (-)

15713575 .. 15714174

Gene Structure 600 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g12100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGAGTTCATCGGATTCTGTCAAGTTTTCATCACCATCATGACTCTGCTGTACATGTGGTGCAGATCATTAACATTTTCTTCTCGGGATTCTTCTGCTGCTACCGAGCATGATGATGATGGTGATGATATCCCCCTTTCTCGTGAAAAGTACGATGTCTTTGTTAGTTTCAGAGGTGAGGACACCCGCCTTGGTGTCACCAGCCATCTTCATGAGGCCTTACGTCAGAAGAAAATCGAAACATACATAGATTACAGACTTAATAGAGGAGCCGACATCAGACCTGCCCTTCTAGAAGCAATCGAGAAATCTACGGTTTCAGTAGTCATTTTCTCACGAAACTATGCTTCTTCCTCGTGGTGTTTGGATGAACTGGTACATATGCTGAAGCGCAAGGAAAAATACGGGCAGATGGTTATACCTATTTTTTACGACATCAACCCATCAGATGTGGGAAAACAACAGGGGAGTTATGCAGATGCATTTTCTCAACTTGAGAAACGTTTCAAGAGCAGGATTGACAAGGTGCACAACTGGAGGGCCGCTTTGAAAGAAGCATCCGGTATATCTGGATTTGATCATTCCAACCAAAAAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

200

Amino Acids

22.88

Weight (kDa)

6.6

Isoelectric Point (pI)

38.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	50 - 198	1e-46	TIR domain
TIR_2	PF13676	53 - 164	3e-16	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20142
fragaria_vesca	FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730
malus_domestica	MD05G1140000.v1.1
prunus_persica	Prupe.1G120200_v2.0.a1
pyrus_communis	pycom03g08420 pycom04g02910 pycom10g12010 pycom10g12080 pycom10g12100
rosa_chinensis	RchiOBHm_Chr3g0451631 RchiOBHm_Chr5g0026391 RchiOBHm_Chr7g0241711
rosa_laevigata	RLG00000004786 RLG00000004787 RLG00000029480
rosa_multiflora	Rmu_co8097864.1_g000001 Rmu_sc0001689.1_g000015 Rmu_sc0002354.1_g000038 Rmu_sc0003469.1_g000013 Rmu_sc0006326.1_g000044 Rmu_sc0038436.1_g000001 Rmu_sc0043107.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053220 Rroxscaffold_3G00218740 Rroxscaffold_3G00267480 Rroxscaffold_4G00317010 Rroxscaffold_6G00397670 Rroxscaffold_6G00397680
rosa_rugosa	Rorug01G0112600 Rorug05G0000700 Rorug06G0259600 Rorug07G0346700
rosa_samantha	Rh7AG085700
rosa_wichuraiana	Rw1G011340 Rw7G007550 Rw7G042350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	292
AciI	CCGC	2 cut(s)	187, 543
AclI	AACGTT	1 cut(s)	502
AcuI	CTGAAG	1 cut(s)	407
AfaI	GTAC	3 cut(s)	53, 152, 378
AflIII	ACRYGT	1 cut(s)	54
AgsI	TTSAA	2 cut(s)	508, 550
Alw21I	GWGCWC	1 cut(s)	531
Alw44I	GTGCAC	1 cut(s)	527
Ama87I	CYCGRG	1 cut(s)	84
AoxI	GGCC	2 cut(s)	216, 540
ApaLI	GTGCAC	1 cut(s)	527
ApeKI	GCWGC	1 cut(s)	98
Asp700I	GAANNNNTTC	1 cut(s)	503
AspLEI	GCGC	1 cut(s)	393
AspS9I	GGNCC	1 cut(s)	540
AsuHPI	GGTGA	4 cut(s)	25, 134, 188, 190
AvaI	CYCGRG	1 cut(s)	84
BaeGI	GKGCMC	1 cut(s)	531
BauI	CACGAG	2 cut(s)	141, 355
Bbv12I	GWGCWC	1 cut(s)	531
BbvI	GCAGC	1 cut(s)	85
BccI	CCATC	5 cut(s)	44, 113, 213, 406, 451
BclI	TGATCA	1 cut(s)	577
BfaI	CTAG	1 cut(s)	293
BfuAI	ACCTGC	1 cut(s)	292
BisI	GCNGC	2 cut(s)	99, 543
BlsI	GCNGC	2 cut(s)	100, 544
BmeT110I	CYCGRG	1 cut(s)	84
BmgT120I	GGNCC	1 cut(s)	540
BmiI	GGNNCC	1 cut(s)	271
BmsI	GCATC	2 cut(s)	469, 566
BpmI	CTGGAG	1 cut(s)	556
BpuEI	CTTGAG	1 cut(s)	515
BsaJI	CCNNGG	1 cut(s)	190
BsaWI	WCCGGW	1 cut(s)	560
Bse1I	ACTGG	2 cut(s)	378, 539
BseDI	CCNNGG	1 cut(s)	190
BseGI	GGATG	2 cut(s)	373, 557
BseNI	ACTGG	2 cut(s)	378, 539
BseRI	GAGGAG	1 cut(s)	282
BseSI	GKGCMC	1 cut(s)	531
BseXI	GCAGC	1 cut(s)	85
BsgI	GTGCAG	1 cut(s)	82
BshFI	GGCC	2 cut(s)	218, 542
BsiHKAI	GWGCWC	1 cut(s)	531
BsiHKCI	CYCGRG	1 cut(s)	84
BsiSI	CCGG	1 cut(s)	561
BsnI	GGCC	2 cut(s)	218, 542
BsoBI	CYCGRG	1 cut(s)	84
Bsp1286I	GDGCHC	1 cut(s)	531
Bsp1407I	TGTACA	1 cut(s)	51
Bsp143I	GATC	2 cut(s)	65, 577
BspACI	CCGC	2 cut(s)	187, 543
BspANI	GGCC	2 cut(s)	218, 542
BspHI	TCATGA	2 cut(s)	39, 211
BspLI	GGNNCC	1 cut(s)	271
BspMI	ACCTGC	1 cut(s)	292
BsrGI	TGTACA	1 cut(s)	51
BsrI	ACTGG	2 cut(s)	378, 539
BssECI	CCNNGG	1 cut(s)	190
BssMI	GATC	2 cut(s)	65, 577
BssSI	CACGAG	2 cut(s)	141, 355
BssT1I	CCWWGG	1 cut(s)	190
Bst2BI	CACGAG	2 cut(s)	141, 355
Bst4CI	ACNGT	1 cut(s)	316
BstAUI	TGTACA	1 cut(s)	51
BstF5I	GGATG	2 cut(s)	373, 557
BstHHI	GCGC	1 cut(s)	393
BstKTI	GATC	2 cut(s)	68, 580
BstMBI	GATC	2 cut(s)	65, 577
BstNSI	RCATGY	1 cut(s)	58
BstSLI	GKGCMC	1 cut(s)	531
BstV1I	GCAGC	1 cut(s)	85
BsuRI	GGCC	2 cut(s)	218, 542
BtsCI	GGATG	2 cut(s)	373, 557
BveI	ACCTGC	1 cut(s)	292
CciI	TCATGA	2 cut(s)	39, 211
CfoI	GCGC	1 cut(s)	393
Cfr13I	GGNCC	1 cut(s)	540
Csp6I	GTAC	3 cut(s)	52, 151, 377
CviAII	CATG	4 cut(s)	40, 55, 110, 212
CviJI	RGCY	4 cut(s)	204, 218, 272, 542
CviKI_1	RGCY	4 cut(s)	204, 218, 272, 542
CviQI	GTAC	3 cut(s)	52, 151, 377
DpnI	GATC	2 cut(s)	67, 579
DpnII	GATC	2 cut(s)	65, 577
Eco130I	CCWWGG	1 cut(s)	190
Eco147I	AGGCCT	1 cut(s)	218
Eco32I	GATATC	1 cut(s)	130
Eco57I	CTGAAG	1 cut(s)	407
Eco88I	CYCGRG	1 cut(s)	84
EcoRV	GATATC	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	190
EcoT22I	ATGCAT	1 cut(s)	484
ErhI	CCWWGG	1 cut(s)	190
FaeI	CATG	4 cut(s)	43, 58, 113, 215
FatI	CATG	4 cut(s)	39, 54, 109, 211
FauI	CCCGC	1 cut(s)	194
FauNDI	CATATG	1 cut(s)	381
FbaI	TGATCA	1 cut(s)	577
Fnu4HI	GCNGC	2 cut(s)	99, 543
FokI	GGATG	2 cut(s)	380, 544
Fsp4HI	GCNGC	2 cut(s)	99, 543
FspBI	CTAG	1 cut(s)	293
GlaI	GCGC	1 cut(s)	392
GluI	GCNGC	2 cut(s)	99, 543
GsuI	CTGGAG	1 cut(s)	556
HaeIII	GGCC	2 cut(s)	218, 542
HapII	CCGG	1 cut(s)	561
HhaI	GCGC	1 cut(s)	393
Hin1II	CATG	4 cut(s)	43, 58, 113, 215
Hin6I	GCGC	1 cut(s)	391
HinP1I	GCGC	1 cut(s)	391
HinfI	GANTC	3 cut(s)	15, 43, 89
HpaII	CCGG	1 cut(s)	561
HphI	GGTGA	4 cut(s)	25, 134, 188, 190
Hpy166II	GTNNAC	1 cut(s)	529
Hpy188I	TCNGA	5 cut(s)	14, 173, 228, 281, 448
Hpy188III	TCNNGA	9 cut(s)	40, 86, 143, 212, 293, 304, 336, 508, 570
Hpy8I	GTNNAC	1 cut(s)	529
HpyAV	CCTTC	1 cut(s)	299
HpyCH4III	ACNGT	1 cut(s)	316
HpyCH4IV	ACGT	2 cut(s)	223, 502
HpyCH4V	TGCA	4 cut(s)	63, 476, 482, 529
HpySE526I	ACGT	2 cut(s)	223, 502
Hsp92II	CATG	4 cut(s)	43, 58, 113, 215
HspAI	GCGC	1 cut(s)	391
Ksp22I	TGATCA	1 cut(s)	577
Kzo9I	GATC	2 cut(s)	65, 577
LmnI	GCTCC	1 cut(s)	269
LpnPI	CCDG	8 cut(s)	214, 297, 359, 449, 499, 520, 555, 574
Lsp1109I	GCAGC	1 cut(s)	85
LweI	GCATC	2 cut(s)	469, 566
MaeI	CTAG	1 cut(s)	293
MaeII	ACGT	2 cut(s)	223, 502
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	2 cut(s)	67, 579
MboI	GATC	2 cut(s)	65, 577
MboII	GAAGA	5 cut(s)	72, 84, 200, 241, 342
MhlI	GDGCHC	1 cut(s)	531
MlyI	GAGTC	1 cut(s)	37
MnlI	CCTC	6 cut(s)	167, 172, 208, 260, 364, 531
Mph1103I	ATGCAT	1 cut(s)	484
MroXI	GAANNNNTTC	1 cut(s)	503
MseI	TTAA	2 cut(s)	71, 261
MslI	CAYNNNNRTG	3 cut(s)	38, 114, 210
MspI	CCGG	1 cut(s)	561
NdeI	CATATG	1 cut(s)	381
NdeII	GATC	2 cut(s)	65, 577
NlaIII	CATG	4 cut(s)	43, 58, 113, 215
NlaIV	GGNNCC	1 cut(s)	271
NmuCI	GTSAC	1 cut(s)	196
NsiI	ATGCAT	1 cut(s)	484
NspI	RCATGY	1 cut(s)	58
PagI	TCATGA	2 cut(s)	39, 211
PceI	AGGCCT	1 cut(s)	218
PciI	ACATGT	1 cut(s)	54
PdmI	GAANNNNTTC	1 cut(s)	503
PfeI	GAWTC	2 cut(s)	15, 89
PkrI	GCNGC	2 cut(s)	100, 544
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
PscI	ACATGT	1 cut(s)	54
Psp1406I	AACGTT	1 cut(s)	502
PspN4I	GGNNCC	1 cut(s)	271
PspPI	GGNCC	1 cut(s)	540
RsaI	GTAC	3 cut(s)	53, 152, 378
RsaNI	GTAC	3 cut(s)	52, 151, 377
RseI	CAYNNNNRTG	3 cut(s)	38, 114, 210
SaqAI	TTAA	2 cut(s)	71, 261
SatI	GCNGC	2 cut(s)	99, 543
Sau3AI	GATC	2 cut(s)	65, 577
Sau96I	GGNCC	1 cut(s)	540
SchI	GAGTC	1 cut(s)	37
SduI	GDGCHC	1 cut(s)	531
SetI	ASST	6 cut(s)	178, 226, 286, 424, 505, 528
SfaNI	GCATC	2 cut(s)	469, 566
SmiMI	CAYNNNNRTG	3 cut(s)	38, 114, 210
SmlI	CTYRAG	1 cut(s)	494
SmoI	CTYRAG	1 cut(s)	494
SseBI	AGGCCT	1 cut(s)	218
SsiI	CCGC	2 cut(s)	187, 543
SspMI	CTAG	1 cut(s)	293
StuI	AGGCCT	1 cut(s)	218
StyI	CCWWGG	1 cut(s)	190
TaaI	ACNGT	1 cut(s)	316
TaiI	ACGT	2 cut(s)	226, 505
TaqI	TCGA	2 cut(s)	237, 303
TatI	WGTACW	1 cut(s)	51
TauI	GCSGC	1 cut(s)	545
TfiI	GAWTC	2 cut(s)	15, 89
Tru1I	TTAA	2 cut(s)	71, 261
Tru9I	TTAA	2 cut(s)	71, 261
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	1 cut(s)	98
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	3 cut(s)	19, 200, 384
VneI	GTGCAC	1 cut(s)	527
XbaI	TCTAGA	1 cut(s)	292
XceI	RCATGY	1 cut(s)	58
XmnI	GAANNNNTTC	1 cut(s)	503
XspI	CTAG	1 cut(s)	293
Zsp2I	ATGCAT	1 cut(s)	484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.