Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0002558

Physical Location & Seq

Genomic Coordinates Reverse (-)

27073196 .. 27074360

Gene Structure 1165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1140000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCTGCTTCTTCTGCTGCTGCTGCTGCTATACCCCCTCAAGAAAAGTATGATGTCTTTCTAAGTTTCAGAGGTGAGGACACCCGCAATACTTTTACCAGCCATCTTTACGCTGCTTTATCGGGGAAGAAGATCACCTACATAGACGACATACTTGAGAGAGGAAACGAAATTTCACATGCCCTTCTCGAAGCAATCGAGAAATCAAAGCTTTCTGTTATCATTTTCTTGACAAACCATGCTTCTTCCACTTGGTGTCTGGATGAACTTGCGCACATACTTGGATGCAAGGAAAGAAATGGGCAGCTTGTTTTACCCATTTTTTACGACATTGATCCATCACATGTAAGAAAGCAGCAGGGGAGTTATGCAGATGCATTTGCTCAACTTGAAGAACGTTTCAAGGACAATATGGACAAGGTGCACAACTGGAGGGATACTTTGACGAAAGCAGCCAATCTATCTGGGTTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

159

Amino Acids

17.72

Weight (kDa)

5.65

Isoelectric Point (pI)

35.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	16 - 157	7.2e-46	TIR domain
TIR_2	PF13676	19 - 134	5.1e-12	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20142
fragaria_vesca	FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730
malus_domestica	MD05G1140000.v1.1
prunus_persica	Prupe.1G120200_v2.0.a1
pyrus_communis	pycom03g08420 pycom04g02910 pycom10g12010 pycom10g12080 pycom10g12100
rosa_chinensis	RchiOBHm_Chr3g0451631 RchiOBHm_Chr5g0026391 RchiOBHm_Chr7g0241711
rosa_laevigata	RLG00000004786 RLG00000004787 RLG00000029480
rosa_multiflora	Rmu_co8097864.1_g000001 Rmu_sc0001689.1_g000015 Rmu_sc0002354.1_g000038 Rmu_sc0003469.1_g000013 Rmu_sc0006326.1_g000044 Rmu_sc0038436.1_g000001 Rmu_sc0043107.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053220 Rroxscaffold_3G00218740 Rroxscaffold_3G00267480 Rroxscaffold_4G00317010 Rroxscaffold_6G00397670 Rroxscaffold_6G00397680
rosa_rugosa	Rorug01G0112600 Rorug05G0000700 Rorug06G0259600 Rorug07G0346700
rosa_samantha	Rh7AG085700
rosa_wichuraiana	Rw1G011340 Rw7G007550 Rw7G042350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	273
AciI	CCGC	1 cut(s)	85
AclI	AACGTT	1 cut(s)	397
AclWI	GGATC	1 cut(s)	329
AcsI	RAATTY	1 cut(s)	171
AdeI	CACNNNGTG	1 cut(s)	255
AflIII	ACRYGT	1 cut(s)	343
AgsI	TTSAA	2 cut(s)	392, 403
AluBI	AGCT	2 cut(s)	211, 307
AluI	AGCT	2 cut(s)	211, 307
Alw21I	GWGCWC	1 cut(s)	426
Alw44I	GTGCAC	1 cut(s)	422
AlwI	GGATC	1 cut(s)	329
ApaLI	GTGCAC	1 cut(s)	422
ApeKI	GCWGC	9 cut(s)	5, 17, 20, 23, 26, 113, 304, 355, 452
ApoI	RAATTY	1 cut(s)	171
AspLEI	GCGC	1 cut(s)	274
AsuHPI	GGTGA	2 cut(s)	86, 127
BaeGI	GKGCMC	1 cut(s)	426
BarI	GAAGNNNNNNTAC	2 cut(s)	122, 154
Bbv12I	GWGCWC	1 cut(s)	426
BbvI	GCAGC	8 cut(s)	4, 7, 10, 13, 100, 316, 367, 464
BccI	CCATC	2 cut(s)	111, 346
BciVI	GTATCC	1 cut(s)	430
BfuI	GTATCC	1 cut(s)	430
BisI	GCNGC	9 cut(s)	6, 18, 21, 24, 27, 114, 305, 356, 453
BlsI	GCNGC	9 cut(s)	7, 19, 22, 25, 28, 115, 306, 357, 454
BmsI	GCATC	2 cut(s)	275, 364
BpmI	CTGGAG	1 cut(s)	451
BpuEI	CTTGAG	2 cut(s)	24, 176
Bse1I	ACTGG	1 cut(s)	434
BseGI	GGATG	2 cut(s)	268, 290
BseNI	ACTGG	1 cut(s)	434
BseSI	GKGCMC	1 cut(s)	426
BseXI	GCAGC	8 cut(s)	4, 7, 10, 13, 100, 316, 367, 464
BsiHKAI	GWGCWC	1 cut(s)	426
Bsp1286I	GDGCHC	1 cut(s)	426
Bsp143I	GATC	2 cut(s)	132, 334
BspACI	CCGC	1 cut(s)	85
BspPI	GGATC	1 cut(s)	329
BsrI	ACTGG	1 cut(s)	434
BssMI	GATC	2 cut(s)	132, 334
BstDEI	CTNAG	1 cut(s)	62
BstF5I	GGATG	2 cut(s)	268, 290
BstHHI	GCGC	1 cut(s)	274
BstKTI	GATC	2 cut(s)	135, 337
BstMBI	GATC	2 cut(s)	132, 334
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 23, 26
BstNSI	RCATGY	2 cut(s)	182, 347
BstSLI	GKGCMC	1 cut(s)	426
BstV1I	GCAGC	8 cut(s)	4, 7, 10, 13, 100, 316, 367, 464
BsuI	GTATCC	1 cut(s)	430
BtsCI	GGATG	2 cut(s)	268, 290
CfoI	GCGC	1 cut(s)	274
CviAII	CATG	3 cut(s)	179, 239, 344
CviJI	RGCY	5 cut(s)	5, 102, 211, 307, 455
CviKI_1	RGCY	5 cut(s)	5, 102, 211, 307, 455
DdeI	CTNAG	1 cut(s)	62
DpnI	GATC	2 cut(s)	134, 336
DpnII	GATC	2 cut(s)	132, 334
DraIII	CACNNNGTG	1 cut(s)	255
EcoT22I	ATGCAT	1 cut(s)	379
FaeI	CATG	3 cut(s)	182, 242, 347
FatI	CATG	3 cut(s)	178, 238, 343
FauI	CCCGC	1 cut(s)	92
Fnu4HI	GCNGC	9 cut(s)	6, 18, 21, 24, 27, 114, 305, 356, 453
FokI	GGATG	2 cut(s)	275, 297
Fsp4HI	GCNGC	9 cut(s)	6, 18, 21, 24, 27, 114, 305, 356, 453
FspI	TGCGCA	1 cut(s)	273
GlaI	GCGC	1 cut(s)	273
GluI	GCNGC	9 cut(s)	6, 18, 21, 24, 27, 114, 305, 356, 453
GsuI	CTGGAG	1 cut(s)	451
HhaI	GCGC	1 cut(s)	274
Hin1II	CATG	3 cut(s)	182, 242, 347
Hin6I	GCGC	1 cut(s)	272
HinP1I	GCGC	1 cut(s)	272
HindIII	AAGCTT	1 cut(s)	209
HphI	GGTGA	2 cut(s)	86, 127
Hpy166II	GTNNAC	1 cut(s)	424
Hpy188I	TCNGA	1 cut(s)	71
Hpy188III	TCNNGA	5 cut(s)	41, 188, 199, 229, 260
Hpy8I	GTNNAC	1 cut(s)	424
HpyAV	CCTTC	1 cut(s)	194
HpyCH4IV	ACGT	1 cut(s)	397
HpyCH4V	TGCA	4 cut(s)	288, 371, 377, 424
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 23, 26
HpyF3I	CTNAG	1 cut(s)	62
HpySE526I	ACGT	1 cut(s)	397
Hsp92II	CATG	3 cut(s)	182, 242, 347
HspAI	GCGC	1 cut(s)	272
Kzo9I	GATC	2 cut(s)	132, 334
LpnPI	CCDG	5 cut(s)	112, 245, 344, 415, 450
Lsp1109I	GCAGC	8 cut(s)	4, 7, 10, 13, 100, 316, 367, 464
LweI	GCATC	2 cut(s)	275, 364
MaeII	ACGT	1 cut(s)	397
MalI	GATC	2 cut(s)	134, 336
MboI	GATC	2 cut(s)	132, 334
MboII	GAAGA	5 cut(s)	3, 139, 142, 237, 404
MhlI	GDGCHC	1 cut(s)	426
MluCI	AATT	1 cut(s)	171
MnlI	CCTC	5 cut(s)	48, 65, 70, 155, 426
Mph1103I	ATGCAT	1 cut(s)	379
MwoI	GCNNNNNNNGC	3 cut(s)	14, 23, 26
NdeII	GATC	2 cut(s)	132, 334
NlaIII	CATG	3 cut(s)	182, 242, 347
NsbI	TGCGCA	1 cut(s)	273
NsiI	ATGCAT	1 cut(s)	379
NspI	RCATGY	2 cut(s)	182, 347
PciI	ACATGT	1 cut(s)	343
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PkrI	GCNGC	9 cut(s)	7, 19, 22, 25, 28, 115, 306, 357, 454
PscI	ACATGT	1 cut(s)	343
Psp1406I	AACGTT	1 cut(s)	397
SatI	GCNGC	9 cut(s)	6, 18, 21, 24, 27, 114, 305, 356, 453
Sau3AI	GATC	2 cut(s)	132, 334
SduI	GDGCHC	1 cut(s)	426
SetI	ASST	6 cut(s)	76, 140, 213, 309, 400, 423
SfaNI	GCATC	2 cut(s)	275, 364
SmlI	CTYRAG	2 cut(s)	39, 155
SmoI	CTYRAG	2 cut(s)	39, 155
Sse9I	AATT	1 cut(s)	171
SsiI	CCGC	1 cut(s)	85
TaiI	ACGT	1 cut(s)	400
TaqI	TCGA	2 cut(s)	189, 198
TasI	AATT	1 cut(s)	171
TseI	GCWGC	9 cut(s)	5, 17, 20, 23, 26, 113, 304, 355, 452
TspDTI	ATGAA	1 cut(s)	279
VneI	GTGCAC	1 cut(s)	422
XapI	RAATTY	1 cut(s)	171
XceI	RCATGY	2 cut(s)	182, 347
XcmI	CCANNNNNNNNNTGG	1 cut(s)	256
Zsp2I	ATGCAT	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.