Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002558

Physical Location & Seq

Genomic Coordinates Reverse (-)

38447460 .. 38451836

Gene Structure 4377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0346700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCTTCAGGTTGCGGCGGAGGGCGTCTCTTTCCAGGAAGACTGGCCCTACGCCATTCATCTTCTCGGTCACATTTACGCCGGCGATATTAACAGTATGAGGTTTCTTTGGAAGTTGATGCCTTCTGCGGTCAAGGAGAACCAGCAGGAAGTGCAGGCTGCTTGGAAAATTGATCTTTACACCAAGAAGATGTTTCAGCTGCTGCAGTCTGCTTATTCTACAATAAGCATCCAAGATACAGCTCTCTTTTTGGGCATGAATGAGGATGATGCCAGAAATTACGTACGACAGCAAGGTTGGATTGTGGACCCTGCTTCACAAATGATTACTGTGAAGAAGCAGCCTATTATTACTGAGCAGAAACTGAATCCCAGTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

126

Amino Acids

14.49

Weight (kDa)

6.07

Isoelectric Point (pI)

53.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CSN8_PSD8_EIF3K	PF10075	13 - 57	5.7e-07	CSN8/PSMD8/EIF3K family
CSN8_PSD8_EIF3K	PF10075	58 - 117	1.4e-12	CSN8/PSMD8/EIF3K family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20142
fragaria_vesca	FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730
malus_domestica	MD05G1140000.v1.1
prunus_persica	Prupe.1G120200_v2.0.a1
pyrus_communis	pycom03g08420 pycom04g02910 pycom10g12010 pycom10g12080 pycom10g12100
rosa_chinensis	RchiOBHm_Chr3g0451631 RchiOBHm_Chr5g0026391 RchiOBHm_Chr7g0241711
rosa_laevigata	RLG00000004786 RLG00000004787 RLG00000029480
rosa_multiflora	Rmu_co8097864.1_g000001 Rmu_sc0001689.1_g000015 Rmu_sc0002354.1_g000038 Rmu_sc0003469.1_g000013 Rmu_sc0006326.1_g000044 Rmu_sc0038436.1_g000001 Rmu_sc0043107.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053220 Rroxscaffold_3G00218740 Rroxscaffold_3G00267480 Rroxscaffold_4G00317010 Rroxscaffold_6G00397670 Rroxscaffold_6G00397680
rosa_rugosa	Rorug01G0112600 Rorug05G0000700 Rorug06G0259600 Rorug07G0346700
rosa_samantha	Rh7AG085700
rosa_wichuraiana	Rw1G011340 Rw7G007550 Rw7G042350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	14, 17, 128
AcyI	GRCGYC	1 cut(s)	24
AfaI	GTAC	1 cut(s)	285
AjnI	CCWGG	1 cut(s)	33
AluBI	AGCT	2 cut(s)	199, 242
AluI	AGCT	2 cut(s)	199, 242
Alw26I	GTCTC	1 cut(s)	31
AlwNI	CAGNNNCTG	2 cut(s)	202, 364
AoxI	GGCC	1 cut(s)	44
ApeKI	GCWGC	4 cut(s)	158, 199, 202, 340
AspS9I	GGNCC	2 cut(s)	45, 307
AvaII	GGWCC	1 cut(s)	307
BbsI	GAAGAC	1 cut(s)	45
BbvI	GCAGC	4 cut(s)	145, 186, 189, 352
BciT130I	CCWGG	1 cut(s)	35
BcoDI	GTCTC	1 cut(s)	31
BfmI	CTRYAG	1 cut(s)	203
BisI	GCNGC	5 cut(s)	15, 159, 200, 203, 341
BlsI	GCNGC	5 cut(s)	16, 160, 201, 204, 342
Bme1390I	CCNGG	1 cut(s)	35
Bme18I	GGWCC	1 cut(s)	307
BmgT120I	GGNCC	2 cut(s)	45, 307
BmiI	GGNNCC	1 cut(s)	309
BmrFI	CCNGG	1 cut(s)	35
BmrI	ACTGGG	1 cut(s)	366
BmsI	GCATC	3 cut(s)	108, 237, 259
BmuI	ACTGGG	1 cut(s)	366
BpiI	GAAGAC	1 cut(s)	45
BplI	GAGNNNNNCTC	2 cut(s)	11, 43
BsaAI	YACGTR	1 cut(s)	283
BsaHI	GRCGYC	1 cut(s)	24
Bse118I	RCCGGY	1 cut(s)	80
Bse1I	ACTGG	2 cut(s)	47, 372
BseBI	CCWGG	1 cut(s)	35
BseGI	GGATG	2 cut(s)	228, 271
BseMII	CTCAG	1 cut(s)	345
BseNI	ACTGG	2 cut(s)	47, 372
BseXI	GCAGC	4 cut(s)	145, 186, 189, 352
BsgI	GTGCAG	1 cut(s)	173
BshFI	GGCC	1 cut(s)	46
BsiSI	CCGG	1 cut(s)	81
BsiWI	CGTACG	1 cut(s)	283
BsmAI	GTCTC	1 cut(s)	31
BsmBI	CGTCTC	1 cut(s)	31
BsnI	GGCC	1 cut(s)	46
Bsp143I	GATC	1 cut(s)	172
BspACI	CCGC	3 cut(s)	14, 17, 128
BspANI	GGCC	1 cut(s)	46
BspCNI	CTCAG	1 cut(s)	346
BspLI	GGNNCC	1 cut(s)	309
BspMAI	CTGCAG	1 cut(s)	207
BsrFI	RCCGGY	1 cut(s)	80
BsrI	ACTGG	2 cut(s)	47, 372
BssAI	RCCGGY	1 cut(s)	80
BssMI	GATC	1 cut(s)	172
BssNI	GRCGYC	1 cut(s)	24
Bst2UI	CCWGG	1 cut(s)	35
Bst4CI	ACNGT	2 cut(s)	95, 331
BstACI	GRCGYC	1 cut(s)	24
BstAPI	GCANNNNNTGC	1 cut(s)	151
BstBAI	YACGTR	1 cut(s)	283
BstC8I	GCNNGC	2 cut(s)	82, 156
BstDEI	CTNAG	1 cut(s)	354
BstF5I	GGATG	2 cut(s)	228, 271
BstKTI	GATC	1 cut(s)	175
BstMAI	GTCTC	1 cut(s)	31
BstMBI	GATC	1 cut(s)	172
BstMWI	GCNNNNNNNGC	1 cut(s)	151
BstNI	CCWGG	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	33
BstSFI	CTRYAG	1 cut(s)	203
BstSNI	TACGTA	1 cut(s)	283
BstV1I	GCAGC	4 cut(s)	145, 186, 189, 352
BstV2I	GAAGAC	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	46
BtsCI	GGATG	2 cut(s)	228, 271
Cac8I	GCNNGC	2 cut(s)	82, 156
CaiI	CAGNNNCTG	2 cut(s)	202, 364
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	2 cut(s)	45, 307
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	1 cut(s)	284
CviAII	CATG	1 cut(s)	256
CviJI	RGCY	5 cut(s)	46, 158, 199, 242, 343
CviKI_1	RGCY	5 cut(s)	46, 158, 199, 242, 343
CviQI	GTAC	1 cut(s)	284
DdeI	CTNAG	1 cut(s)	354
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
EciI	GGCGGA	1 cut(s)	32
Eco105I	TACGTA	1 cut(s)	283
Eco47I	GGWCC	1 cut(s)	307
EcoRII	CCWGG	1 cut(s)	33
Esp3I	CGTCTC	1 cut(s)	31
FaeI	CATG	1 cut(s)	259
FaiI	YATR	2 cut(s)	98, 257
FatI	CATG	1 cut(s)	255
Fnu4HI	GCNGC	5 cut(s)	15, 159, 200, 203, 341
FokI	GGATG	2 cut(s)	215, 278
Fsp4HI	GCNGC	5 cut(s)	15, 159, 200, 203, 341
GluI	GCNGC	5 cut(s)	15, 159, 200, 203, 341
HaeIII	GGCC	1 cut(s)	46
HapII	CCGG	1 cut(s)	81
HgaI	GACGC	1 cut(s)	13
Hin1I	GRCGYC	1 cut(s)	24
Hin1II	CATG	1 cut(s)	259
HinfI	GANTC	1 cut(s)	367
HpaII	CCGG	1 cut(s)	81
Hpy166II	GTNNAC	1 cut(s)	307
Hpy8I	GTNNAC	1 cut(s)	307
HpyAV	CCTTC	1 cut(s)	132
HpyCH4III	ACNGT	2 cut(s)	95, 331
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	2 cut(s)	154, 205
HpyF10VI	GCNNNNNNNGC	1 cut(s)	151
HpyF3I	CTNAG	1 cut(s)	354
HpySE526I	ACGT	1 cut(s)	282
Hsp92I	GRCGYC	1 cut(s)	24
Hsp92II	CATG	1 cut(s)	259
KroI	GCCGGC	1 cut(s)	80
KroNI	GCCGGC	1 cut(s)	82
Kzo9I	GATC	1 cut(s)	172
LpnPI	CCDG	9 cut(s)	20, 28, 47, 94, 131, 140, 155, 286, 324
Lsp1109I	GCAGC	4 cut(s)	145, 186, 189, 352
LweI	GCATC	3 cut(s)	108, 237, 259
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	1 cut(s)	68
MalI	GATC	1 cut(s)	174
MboI	GATC	1 cut(s)	172
MboII	GAAGA	4 cut(s)	50, 53, 199, 346
MluCI	AATT	2 cut(s)	168, 277
MmeI	TCCRAC	1 cut(s)	278
MnlI	CCTC	3 cut(s)	13, 93, 256
MreI	CGCCGGCG	1 cut(s)	80
MroNI	GCCGGC	1 cut(s)	80
MseI	TTAA	1 cut(s)	90
MspA1I	CMGCKG	1 cut(s)	199
MspI	CCGG	1 cut(s)	81
MspR9I	CCNGG	1 cut(s)	35
MvaI	CCWGG	1 cut(s)	35
MwoI	GCNNNNNNNGC	1 cut(s)	151
NaeI	GCCGGC	1 cut(s)	82
NdeII	GATC	1 cut(s)	172
NgoMIV	GCCGGC	1 cut(s)	80
NlaIII	CATG	1 cut(s)	259
NlaIV	GGNNCC	1 cut(s)	309
NmuCI	GTSAC	1 cut(s)	68
PdiI	GCCGGC	1 cut(s)	82
PfeI	GAWTC	1 cut(s)	367
Pfl23II	CGTACG	1 cut(s)	283
PfoI	TCCNGGA	1 cut(s)	33
PkrI	GCNGC	5 cut(s)	16, 160, 201, 204, 342
Ppu21I	YACGTR	1 cut(s)	283
Psp6I	CCWGG	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	33
PspLI	CGTACG	1 cut(s)	283
PspN4I	GGNNCC	1 cut(s)	309
PspPI	GGNCC	2 cut(s)	45, 307
PstI	CTGCAG	1 cut(s)	207
PstNI	CAGNNNCTG	2 cut(s)	202, 364
PvuII	CAGCTG	1 cut(s)	199
RsaI	GTAC	1 cut(s)	285
RsaNI	GTAC	1 cut(s)	284
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	5 cut(s)	15, 159, 200, 203, 341
Sau3AI	GATC	1 cut(s)	172
Sau96I	GGNCC	2 cut(s)	45, 307
ScrFI	CCNGG	1 cut(s)	35
SetI	ASST	6 cut(s)	12, 104, 201, 244, 285, 298
SfaNI	GCATC	3 cut(s)	108, 237, 259
SfcI	CTRYAG	1 cut(s)	203
SgrAI	CRCCGGYG	1 cut(s)	80
SinI	GGWCC	1 cut(s)	307
SnaBI	TACGTA	1 cut(s)	283
Sse9I	AATT	2 cut(s)	168, 277
SsiI	CCGC	3 cut(s)	14, 17, 128
StyD4I	CCNGG	1 cut(s)	33
TaaI	ACNGT	2 cut(s)	95, 331
TaiI	ACGT	1 cut(s)	285
TaqII	GACCGA	1 cut(s)	56
TasI	AATT	2 cut(s)	168, 277
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	1 cut(s)	367
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TseFI	GTSAC	1 cut(s)	68
TseI	GCWGC	4 cut(s)	158, 199, 202, 340
Tsp45I	GTSAC	1 cut(s)	68
TspDTI	ATGAA	2 cut(s)	47, 272
VpaK11BI	GGWCC	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.