Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0002558

Physical Location & Seq

Genomic Coordinates Reverse (-)

6807074 .. 6807574

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g08420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCTTCTTCTTCTTCTTCATCTGCTGCTGCTGATGCTGATGATACAAAAACGTATGATGTGTTTATTAGTTTCAGAGGTGAGGACACCCGCCGTACTTTTACCAGCCATCTTCACGCTGCCTTGCTTGAGAAAAAAATCACAACCTACGTGGATGACAAGCTTAAGAGAGGAGATGAAATCGCACCTGCCCTTCTCGAAGCAATCAAGGAATCAGAGCTTTCGGTGATCATTTTCTCGAAAGACTATGCTTCTTCCACGTGGTGCTTGGATGAGCTTGTGCATATCATAGAATGCAAGGAAAGACATGGTCAGTTGGTTATACCCATTTTTTACGACATCCTTCCATCGGACGTACGAAAACAACAGGGGAGTTATGCGGTTGCGTTTGATCTAATCGAGCAACGTTTCGAGAACAGTATCGACAAGGTGCGCAAGTGGAGGGATGCTCTGACGAAAGCAGCAAATATATCTGGGTTTGATTCAAAAAATTTTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

18.8

Weight (kDa)

5.59

Isoelectric Point (pI)

52.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	19 - 165	3.3e-51	TIR domain
TIR_2	PF13676	21 - 140	1.5e-16	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20142
fragaria_vesca	FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730
malus_domestica	MD05G1140000.v1.1
prunus_persica	Prupe.1G120200_v2.0.a1
pyrus_communis	pycom03g08420 pycom04g02910 pycom10g12010 pycom10g12080 pycom10g12100
rosa_chinensis	RchiOBHm_Chr3g0451631 RchiOBHm_Chr5g0026391 RchiOBHm_Chr7g0241711
rosa_laevigata	RLG00000004786 RLG00000004787 RLG00000029480
rosa_multiflora	Rmu_co8097864.1_g000001 Rmu_sc0001689.1_g000015 Rmu_sc0002354.1_g000038 Rmu_sc0003469.1_g000013 Rmu_sc0006326.1_g000044 Rmu_sc0038436.1_g000001 Rmu_sc0043107.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053220 Rroxscaffold_3G00218740 Rroxscaffold_3G00267480 Rroxscaffold_4G00317010 Rroxscaffold_6G00397670 Rroxscaffold_6G00397680
rosa_rugosa	Rorug01G0112600 Rorug05G0000700 Rorug06G0259600 Rorug07G0346700
rosa_samantha	Rh7AG085700
rosa_wichuraiana	Rw1G011340 Rw7G007550 Rw7G042350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	196
Acc16I	TGCGCA	1 cut(s)	434
Acc36I	ACCTGC	1 cut(s)	196
AciI	CCGC	2 cut(s)	91, 380
AclI	AACGTT	1 cut(s)	406
AcsI	RAATTY	1 cut(s)	490
AcvI	CACGTG	1 cut(s)	261
AdeI	CACNNNGTG	1 cut(s)	264
AfaI	GTAC	2 cut(s)	97, 357
AfiI	CCNNNNNNNGG	1 cut(s)	349
AflII	CTTAAG	1 cut(s)	164
AgsI	TTSAA	1 cut(s)	486
AluBI	AGCT	3 cut(s)	163, 220, 277
AluI	AGCT	3 cut(s)	163, 220, 277
ApeKI	GCWGC	4 cut(s)	26, 29, 119, 461
ApoI	RAATTY	1 cut(s)	490
AspLEI	GCGC	1 cut(s)	435
AsuHPI	GGTGA	2 cut(s)	92, 238
BbrPI	CACGTG	1 cut(s)	261
BbvI	GCAGC	4 cut(s)	13, 16, 106, 473
BccI	CCATC	2 cut(s)	117, 355
BceAI	ACGGC	1 cut(s)	78
BclI	TGATCA	1 cut(s)	228
BfrI	CTTAAG	1 cut(s)	164
BfuAI	ACCTGC	1 cut(s)	196
BisI	GCNGC	4 cut(s)	27, 30, 120, 462
BlsI	GCNGC	4 cut(s)	28, 31, 121, 463
BmsI	GCATC	2 cut(s)	25, 436
BplI	GAGNNNNNCTC	2 cut(s)	433, 465
BpuEI	CTTGAG	1 cut(s)	149
BsaAI	YACGTR	2 cut(s)	151, 261
Bsc4I	CCNNNNNNNGG	1 cut(s)	349
BseGI	GGATG	4 cut(s)	160, 277, 339, 451
BseLI	CCNNNNNNNGG	1 cut(s)	349
BseRI	GAGGAG	1 cut(s)	186
BseXI	GCAGC	4 cut(s)	13, 16, 106, 473
BsiWI	CGTACG	1 cut(s)	355
BslI	CCNNNNNNNGG	1 cut(s)	349
BsmI	GAATGC	1 cut(s)	299
Bsp143I	GATC	2 cut(s)	228, 391
BspACI	CCGC	2 cut(s)	91, 380
BspMI	ACCTGC	1 cut(s)	196
BspTI	CTTAAG	1 cut(s)	164
BssMI	GATC	2 cut(s)	228, 391
Bst4CI	ACNGT	1 cut(s)	419
BstAFI	CTTAAG	1 cut(s)	164
BstBAI	YACGTR	2 cut(s)	151, 261
BstF5I	GGATG	4 cut(s)	160, 277, 339, 451
BstHHI	GCGC	1 cut(s)	435
BstKTI	GATC	2 cut(s)	231, 394
BstMBI	GATC	2 cut(s)	228, 391
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstV1I	GCAGC	4 cut(s)	13, 16, 106, 473
BtsCI	GGATG	4 cut(s)	160, 277, 339, 451
BveI	ACCTGC	1 cut(s)	196
CfoI	GCGC	1 cut(s)	435
Csp6I	GTAC	2 cut(s)	96, 356
CspCI	CAANNNNNGTGG	2 cut(s)	132, 167
CviAII	CATG	1 cut(s)	308
CviJI	RGCY	5 cut(s)	5, 108, 163, 220, 277
CviKI_1	RGCY	5 cut(s)	5, 108, 163, 220, 277
CviQI	GTAC	2 cut(s)	96, 356
DpnI	GATC	2 cut(s)	230, 393
DpnII	GATC	2 cut(s)	228, 391
DraIII	CACNNNGTG	1 cut(s)	264
Eco72I	CACGTG	1 cut(s)	261
FaeI	CATG	1 cut(s)	311
FaiI	YATR	8 cut(s)	57, 249, 285, 290, 309, 323, 378, 470
FatI	CATG	1 cut(s)	307
FauI	CCCGC	1 cut(s)	98
FbaI	TGATCA	1 cut(s)	228
Fnu4HI	GCNGC	4 cut(s)	27, 30, 120, 462
FokI	GGATG	4 cut(s)	167, 284, 326, 458
Fsp4HI	GCNGC	4 cut(s)	27, 30, 120, 462
FspI	TGCGCA	1 cut(s)	434
GlaI	GCGC	1 cut(s)	434
GluI	GCNGC	4 cut(s)	27, 30, 120, 462
HhaI	GCGC	1 cut(s)	435
Hin1II	CATG	1 cut(s)	311
Hin6I	GCGC	1 cut(s)	433
HinP1I	GCGC	1 cut(s)	433
HindIII	AAGCTT	1 cut(s)	161
HinfI	GANTC	2 cut(s)	212, 482
HphI	GGTGA	2 cut(s)	92, 238
Hpy188I	TCNGA	4 cut(s)	77, 217, 352, 453
Hpy188III	TCNNGA	3 cut(s)	197, 238, 412
HpyAV	CCTTC	2 cut(s)	203, 353
HpyCH4III	ACNGT	1 cut(s)	419
HpyCH4IV	ACGT	5 cut(s)	53, 150, 260, 354, 406
HpyCH4V	TGCA	2 cut(s)	283, 297
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpySE526I	ACGT	5 cut(s)	53, 150, 260, 354, 406
Hsp92II	CATG	1 cut(s)	311
HspAI	GCGC	1 cut(s)	433
Ksp22I	TGATCA	1 cut(s)	228
Kzo9I	GATC	2 cut(s)	228, 391
LpnPI	CCDG	4 cut(s)	118, 201, 353, 459
Lsp1109I	GCAGC	4 cut(s)	13, 16, 106, 473
LweI	GCATC	2 cut(s)	25, 436
MaeII	ACGT	5 cut(s)	53, 150, 260, 354, 406
MalI	GATC	2 cut(s)	230, 393
MboI	GATC	2 cut(s)	228, 391
MboII	GAAGA	5 cut(s)	3, 6, 9, 104, 246
MluCI	AATT	1 cut(s)	490
MnlI	CCTC	4 cut(s)	71, 76, 164, 435
MseI	TTAA	1 cut(s)	165
MspCI	CTTAAG	1 cut(s)	164
Mva1269I	GAATGC	1 cut(s)	299
MwoI	GCNNNNNNNGC	1 cut(s)	35
NdeII	GATC	2 cut(s)	228, 391
NlaIII	CATG	1 cut(s)	311
NsbI	TGCGCA	1 cut(s)	434
PaqCI	CACCTGC	1 cut(s)	196
PctI	GAATGC	1 cut(s)	299
PfeI	GAWTC	2 cut(s)	212, 482
Pfl23II	CGTACG	1 cut(s)	355
PflFI	GACNNNGTC	1 cut(s)	309
PkrI	GCNGC	4 cut(s)	28, 31, 121, 463
PmaCI	CACGTG	1 cut(s)	261
PmlI	CACGTG	1 cut(s)	261
Ppu21I	YACGTR	2 cut(s)	151, 261
Psp1406I	AACGTT	1 cut(s)	406
PspCI	CACGTG	1 cut(s)	261
PspLI	CGTACG	1 cut(s)	355
PsyI	GACNNNGTC	1 cut(s)	309
RsaI	GTAC	2 cut(s)	97, 357
RsaNI	GTAC	2 cut(s)	96, 356
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	4 cut(s)	27, 30, 120, 462
Sau3AI	GATC	2 cut(s)	228, 391
SfaNI	GCATC	2 cut(s)	25, 436
SmlI	CTYRAG	2 cut(s)	128, 164
SmoI	CTYRAG	2 cut(s)	128, 164
Sse9I	AATT	1 cut(s)	490
SsiI	CCGC	2 cut(s)	91, 380
TaaI	ACNGT	1 cut(s)	419
TaiI	ACGT	5 cut(s)	56, 153, 263, 357, 409
TaqI	TCGA	5 cut(s)	198, 239, 399, 411, 423
TasI	AATT	1 cut(s)	490
TfiI	GAWTC	2 cut(s)	212, 482
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TseI	GCWGC	4 cut(s)	26, 29, 119, 461
TspDTI	ATGAA	2 cut(s)	9, 192
Tth111I	GACNNNGTC	1 cut(s)	309
Vha464I	CTTAAG	1 cut(s)	164
XapI	RAATTY	1 cut(s)	490
XcmI	CCANNNNNNNNNTGG	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.