Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002558

Physical Location & Seq

Genomic Coordinates Forward (+)

60524480 .. 60526491

Gene Structure 2012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00267480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGCCTGTAATGGAGGCTCTTCTTCCTCTGGTTCTCTCACCCCTCCATGCAGACATGACGTGTTTTTGAGTTTTAGAGGTACGGATACGCGCTCCGGTTTTACATATAATCTGTACAAGGCTTTAGATAGAGAGAAAATCAAGACTTTCTTTGATGATCGTACGCTCAAGAGAGGAGAGAACATATCAGCAGCACTTCTTCACGCAATAGAGGTTTCAAGGATTTCTGTGGTGATATGCTCTGAAAACTACGCTTCGTCAAGTTGGTGCTTGGATGAACTTGTCAAGATCCTTGAATGTCAAAAATCAAAGCAGCAGATTGTTATTCCAGTATTTTACAAAGTGGATCCAGCACATGTACGACATCAAATTGGTAGTTTTGGTCAGGCCCTTACCGGCTTGAAATACAACAAGGACAAGGTCCCCGGATGGAGGATAGCTCTTACACAAGTAGCAAATTTGTCTGGATGGACTTATGTGGACGGGTATGAATCTGATTTTATTGAGAAAATTGTTAAAGAGATATTAGATGTGGTTGGCCTTGACAACTATAAGAAGAATGAAGATGTGGCCAGCCTCAACCACCAAAACAAAAAAATATATTTAACCGGTCTCAATGACCAAATGAAGAACAACAATTGGGCCGACGTTTACAATCAAACTTTGCTTCAGTTCCAGAAGAATATAGATGGGGCAGATGTCTATAATAAGGCATACCTTCAACTCCAGGAGAATGTAGATGAGGATAATGTCTACAACAAGACCTTCCTTCGACTCCAAAAGGAATCAGAGGAGGCGGACGTCTACACCAAGACCTTCCTTCGGTTCCAGAAGGAATCAGAAGAGGCAGATGTCTACAACAAGACCTTCCTTCGGCTCCAGAAGGAATCAGAGGAGGCGGACGTTTACAACAAGACATTACTTCGGCTCCAGAAGGAATCAGAGGAGGCGGACGTTTATAACCAGACATTACTTCGGCTCCAAAAGGAATCAGAGGAGGCAGATGTCTACAATAAGACATTATTTCAACTCCAAAACAGGAGCGGATCCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

351

Amino Acids

40.42

Weight (kDa)

5.59

Isoelectric Point (pI)

48.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	19 - 188	1.7e-55	TIR domain
TIR_2	PF13676	21 - 117	1.6e-15	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20142
fragaria_vesca	FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730
malus_domestica	MD05G1140000.v1.1
prunus_persica	Prupe.1G120200_v2.0.a1
pyrus_communis	pycom03g08420 pycom04g02910 pycom10g12010 pycom10g12080 pycom10g12100
rosa_chinensis	RchiOBHm_Chr3g0451631 RchiOBHm_Chr5g0026391 RchiOBHm_Chr7g0241711
rosa_laevigata	RLG00000004786 RLG00000004787 RLG00000029480
rosa_multiflora	Rmu_co8097864.1_g000001 Rmu_sc0001689.1_g000015 Rmu_sc0002354.1_g000038 Rmu_sc0003469.1_g000013 Rmu_sc0006326.1_g000044 Rmu_sc0038436.1_g000001 Rmu_sc0043107.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053220 Rroxscaffold_3G00218740 Rroxscaffold_3G00267480 Rroxscaffold_4G00317010 Rroxscaffold_6G00397670 Rroxscaffold_6G00397680
rosa_rugosa	Rorug01G0112600 Rorug05G0000700 Rorug06G0259600 Rorug07G0346700
rosa_samantha	Rh7AG085700
rosa_wichuraiana	Rw1G011340 Rw7G007550 Rw7G042350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	960
AatII	GACGTC	1 cut(s)	804
AccBSI	CCGCTC	1 cut(s)	1044
AccI	GTMKAC	4 cut(s)	753, 804, 855, 1008
AccII	CGCG	1 cut(s)	91
AciI	CCGC	4 cut(s)	797, 899, 950, 1044
AclWI	GGATC	5 cut(s)	283, 341, 354, 1041, 1054
AcoI	YGGCCR	1 cut(s)	570
AcsI	RAATTY	1 cut(s)	457
AcuI	CTGAAG	1 cut(s)	653
AcyI	GRCGYC	1 cut(s)	801
AfaI	GTAC	4 cut(s)	82, 116, 163, 360
AfiI	CCNNNNNNNGG	3 cut(s)	432, 822, 873
AflIII	ACRYGT	2 cut(s)	60, 355
AgeI	ACCGGT	1 cut(s)	608
AgsI	TTSAA	5 cut(s)	219, 296, 403, 722, 1028
AjiI	CACGTC	1 cut(s)	61
AjnI	CCWGG	1 cut(s)	726
AluBI	AGCT	1 cut(s)	440
AluI	AGCT	1 cut(s)	440
Alw26I	GTCTC	1 cut(s)	617
AlwI	GGATC	5 cut(s)	283, 341, 354, 1041, 1054
AoxI	GGCC	5 cut(s)	3, 387, 538, 570, 642
ApeKI	GCWGC	2 cut(s)	191, 313
ApoI	RAATTY	1 cut(s)	457
AsiGI	ACCGGT	1 cut(s)	608
AspLEI	GCGC	1 cut(s)	93
AspS9I	GGNCC	3 cut(s)	388, 421, 642
AsuC2I	CCSGG	1 cut(s)	426
AsuHPI	GGTGA	2 cut(s)	31, 244
AvaII	GGWCC	1 cut(s)	421
BalI	TGGCCA	1 cut(s)	572
BamHI	GGATCC	2 cut(s)	346, 1046
BbvI	GCAGC	2 cut(s)	203, 325
BccI	CCATC	3 cut(s)	423, 462, 683
BciT130I	CCWGG	1 cut(s)	728
BciVI	GTATCC	1 cut(s)	79
BcnI	CCSGG	1 cut(s)	426
BcoDI	GTCTC	1 cut(s)	617
BfuI	GTATCC	1 cut(s)	79
BisI	GCNGC	2 cut(s)	192, 314
BlsI	GCNGC	2 cut(s)	193, 315
Bme1390I	CCNGG	2 cut(s)	426, 728
Bme18I	GGWCC	1 cut(s)	421
BmgBI	CACGTC	1 cut(s)	61
BmgT120I	GGNCC	3 cut(s)	388, 421, 642
BmiI	GGNNCC	7 cut(s)	348, 423, 827, 878, 929, 980, 1048
BmrFI	CCNGG	2 cut(s)	426, 728
BplI	GAGNNNNNCTC	2 cut(s)	424, 456
BpmI	CTGGAG	3 cut(s)	710, 863, 914
BpuEI	CTTGAG	1 cut(s)	152
BpuMI	CCSGG	1 cut(s)	426
BsaHI	GRCGYC	1 cut(s)	801
BsaI	GGTCTC	1 cut(s)	617
BsaJI	CCNNGG	1 cut(s)	424
BsaWI	WCCGGW	2 cut(s)	95, 608
BsaXI	ACNNNNNCTCC	4 cut(s)	912, 942, 963, 993
Bsc4I	CCNNNNNNNGG	3 cut(s)	432, 822, 873
Bse118I	RCCGGY	2 cut(s)	395, 608
Bse1I	ACTGG	1 cut(s)	329
BseBI	CCWGG	1 cut(s)	728
BseDI	CCNNGG	1 cut(s)	424
BseGI	GGATG	3 cut(s)	280, 434, 473
BseLI	CCNNNNNNNGG	3 cut(s)	432, 822, 873
BseNI	ACTGG	1 cut(s)	329
BseRI	GAGGAG	5 cut(s)	189, 806, 908, 959, 1010
BseXI	GCAGC	2 cut(s)	203, 325
Bsh1236I	CGCG	1 cut(s)	91
BshFI	GGCC	5 cut(s)	5, 389, 540, 572, 644
BshTI	ACCGGT	1 cut(s)	608
BsiSI	CCGG	4 cut(s)	96, 396, 426, 609
BsiWI	CGTACG	1 cut(s)	161
BslFI	GGGAC	1 cut(s)	407
BslI	CCNNNNNNNGG	3 cut(s)	432, 822, 873
BsmAI	GTCTC	1 cut(s)	617
BsmFI	GGGAC	1 cut(s)	407
BsnI	GGCC	5 cut(s)	5, 389, 540, 572, 644
Bso31I	GGTCTC	1 cut(s)	617
Bsp1407I	TGTACA	1 cut(s)	114
Bsp143I	GATC	4 cut(s)	157, 288, 346, 1046
BspACI	CCGC	4 cut(s)	797, 899, 950, 1044
BspANI	GGCC	5 cut(s)	5, 389, 540, 572, 644
BspFNI	CGCG	1 cut(s)	91
BspLI	GGNNCC	7 cut(s)	348, 423, 827, 878, 929, 980, 1048
BspPI	GGATC	5 cut(s)	283, 341, 354, 1041, 1054
BspQI	GCTCTTC	1 cut(s)	25
BspTNI	GGTCTC	1 cut(s)	617
BsrBI	CCGCTC	1 cut(s)	1044
BsrFI	RCCGGY	2 cut(s)	395, 608
BsrGI	TGTACA	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	329
BssAI	RCCGGY	2 cut(s)	395, 608
BssECI	CCNNGG	1 cut(s)	424
BssMI	GATC	4 cut(s)	157, 288, 346, 1046
BssNI	GRCGYC	1 cut(s)	801
Bst2UI	CCWGG	1 cut(s)	728
Bst6I	CTCTTC	2 cut(s)	25, 837
BstACI	GRCGYC	1 cut(s)	801
BstAUI	TGTACA	1 cut(s)	114
BstC8I	GCNNGC	1 cut(s)	574
BstF5I	GGATG	3 cut(s)	280, 434, 473
BstFNI	CGCG	1 cut(s)	91
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	4 cut(s)	160, 291, 349, 1049
BstMAI	GTCTC	1 cut(s)	617
BstMBI	GATC	4 cut(s)	157, 288, 346, 1046
BstNI	CCWGG	1 cut(s)	728
BstNSI	RCATGY	1 cut(s)	359
BstSCI	CCNGG	2 cut(s)	424, 726
BstUI	CGCG	1 cut(s)	91
BstV1I	GCAGC	2 cut(s)	203, 325
BstX2I	RGATCY	3 cut(s)	288, 346, 1046
BstYI	RGATCY	3 cut(s)	288, 346, 1046
BsuI	GTATCC	1 cut(s)	79
BsuRI	GGCC	5 cut(s)	5, 389, 540, 572, 644
BtrI	CACGTC	1 cut(s)	61
BtsCI	GGATG	3 cut(s)	280, 434, 473
Cac8I	GCNNGC	1 cut(s)	574
CfoI	GCGC	1 cut(s)	93
Cfr10I	RCCGGY	2 cut(s)	395, 608
Cfr13I	GGNCC	3 cut(s)	388, 421, 642
Csp6I	GTAC	4 cut(s)	81, 115, 162, 359
CspAI	ACCGGT	1 cut(s)	608
CviAII	CATG	4 cut(s)	48, 56, 356, 1051
CviQI	GTAC	4 cut(s)	81, 115, 162, 359
DpnI	GATC	4 cut(s)	159, 290, 348, 1048
DpnII	GATC	4 cut(s)	157, 288, 346, 1046
EaeI	YGGCCR	1 cut(s)	570
Eam1104I	CTCTTC	2 cut(s)	25, 837
EarI	CTCTTC	2 cut(s)	25, 837
EciI	GGCGGA	3 cut(s)	812, 914, 965
Eco31I	GGTCTC	1 cut(s)	617
Eco47I	GGWCC	1 cut(s)	421
Eco57I	CTGAAG	1 cut(s)	653
EcoO109I	RGGNCCY	2 cut(s)	388, 421
EcoRII	CCWGG	1 cut(s)	726
FaeI	CATG	4 cut(s)	51, 59, 359, 1054
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FaqI	GGGAC	1 cut(s)	407
FatI	CATG	4 cut(s)	47, 55, 355, 1050
FblI	GTMKAC	4 cut(s)	753, 804, 855, 1008
Fnu4HI	GCNGC	2 cut(s)	192, 314
FokI	GGATG	3 cut(s)	287, 441, 480
Fsp4HI	GCNGC	2 cut(s)	192, 314
GlaI	GCGC	1 cut(s)	92
GluI	GCNGC	2 cut(s)	192, 314
GsuI	CTGGAG	3 cut(s)	710, 863, 914
HaeIII	GGCC	5 cut(s)	5, 389, 540, 572, 644
HapII	CCGG	4 cut(s)	96, 396, 426, 609
HhaI	GCGC	1 cut(s)	93
Hin1I	GRCGYC	1 cut(s)	801
Hin1II	CATG	4 cut(s)	51, 59, 359, 1054
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HinfI	GANTC	7 cut(s)	491, 774, 785, 836, 887, 938, 989
HpaII	CCGG	4 cut(s)	96, 396, 426, 609
HphI	GGTGA	2 cut(s)	31, 244
Hpy166II	GTNNAC	7 cut(s)	481, 652, 754, 805, 856, 907, 1009
Hpy188I	TCNGA	7 cut(s)	244, 496, 790, 841, 892, 943, 994
Hpy188III	TCNNGA	8 cut(s)	142, 169, 286, 465, 676, 829, 880, 931
Hpy8I	GTNNAC	7 cut(s)	481, 652, 754, 805, 856, 907, 1009
Hpy99I	CGWCG	1 cut(s)	650
HpyCH4IV	ACGT	5 cut(s)	60, 648, 801, 903, 954
HpyCH4V	TGCA	1 cut(s)	51
HpySE526I	ACGT	5 cut(s)	60, 648, 801, 903, 954
Hsp92I	GRCGYC	1 cut(s)	801
Hsp92II	CATG	4 cut(s)	51, 59, 359, 1054
HspAI	GCGC	1 cut(s)	91
Kzo9I	GATC	4 cut(s)	157, 288, 346, 1046
LguI	GCTCTTC	1 cut(s)	25
LmnI	GCTCC	5 cut(s)	98, 882, 933, 984, 1041
Lsp1109I	GCAGC	2 cut(s)	203, 325
MaeII	ACGT	5 cut(s)	60, 648, 801, 903, 954
MalI	GATC	4 cut(s)	159, 290, 348, 1048
MbiI	CCGCTC	1 cut(s)	1044
MboI	GATC	4 cut(s)	157, 288, 346, 1046
MboII	GAAGA	8 cut(s)	12, 15, 191, 568, 575, 640, 691, 854
MfeI	CAATTG	1 cut(s)	637
MflI	RGATCY	3 cut(s)	288, 346, 1046
MlsI	TGGCCA	1 cut(s)	572
MluCI	AATT	4 cut(s)	369, 457, 510, 637
MluNI	TGGCCA	1 cut(s)	572
MlyI	GAGTC	1 cut(s)	768
Mox20I	TGGCCA	1 cut(s)	572
MscI	TGGCCA	1 cut(s)	572
MseI	TTAA	2 cut(s)	516, 605
Msp20I	TGGCCA	1 cut(s)	572
MspI	CCGG	4 cut(s)	96, 396, 426, 609
MspR9I	CCNGG	2 cut(s)	426, 728
MunI	CAATTG	1 cut(s)	637
MvaI	CCWGG	1 cut(s)	728
MvnI	CGCG	1 cut(s)	91
NciI	CCSGG	1 cut(s)	426
NdeII	GATC	4 cut(s)	157, 288, 346, 1046
NlaIII	CATG	4 cut(s)	51, 59, 359, 1054
NlaIV	GGNNCC	7 cut(s)	348, 423, 827, 878, 929, 980, 1048
NspI	RCATGY	1 cut(s)	359
PciI	ACATGT	1 cut(s)	355
PciSI	GCTCTTC	1 cut(s)	25
PfeI	GAWTC	6 cut(s)	491, 785, 836, 887, 938, 989
Pfl23II	CGTACG	1 cut(s)	161
PflFI	GACNNNGTC	1 cut(s)	419
PfoI	TCCNGGA	1 cut(s)	726
PinAI	ACCGGT	1 cut(s)	608
PkrI	GCNGC	2 cut(s)	193, 315
PleI	GAGTC	1 cut(s)	768
PpsI	GAGTC	1 cut(s)	768
PpuMI	RGGWCCY	1 cut(s)	421
PscI	ACATGT	1 cut(s)	355
PsiI	TTATAA	1 cut(s)	960
Psp5II	RGGWCCY	1 cut(s)	421
Psp6I	CCWGG	1 cut(s)	726
PspGI	CCWGG	1 cut(s)	726
PspLI	CGTACG	1 cut(s)	161
PspN4I	GGNNCC	7 cut(s)	348, 423, 827, 878, 929, 980, 1048
PspPI	GGNCC	3 cut(s)	388, 421, 642
PspPPI	RGGWCCY	1 cut(s)	421
PsuI	RGATCY	3 cut(s)	288, 346, 1046
PsyI	GACNNNGTC	1 cut(s)	419
RsaI	GTAC	4 cut(s)	82, 116, 163, 360
RsaNI	GTAC	4 cut(s)	81, 115, 162, 359
SapI	GCTCTTC	1 cut(s)	25
SaqAI	TTAA	2 cut(s)	516, 605
SatI	GCNGC	2 cut(s)	192, 314
Sau3AI	GATC	4 cut(s)	157, 288, 346, 1046
Sau96I	GGNCC	3 cut(s)	388, 421, 642
SchI	GAGTC	1 cut(s)	768
ScrFI	CCNGG	2 cut(s)	426, 728
SinI	GGWCC	1 cut(s)	421
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	4 cut(s)	369, 457, 510, 637
SsiI	CCGC	4 cut(s)	797, 899, 950, 1044
StyD4I	CCNGG	2 cut(s)	424, 726
TaiI	ACGT	5 cut(s)	63, 651, 804, 906, 957
TaqI	TCGA	1 cut(s)	772
TasI	AATT	4 cut(s)	369, 457, 510, 637
TatI	WGTACW	1 cut(s)	114
TfiI	GAWTC	6 cut(s)	491, 785, 836, 887, 938, 989
Tru1I	TTAA	2 cut(s)	516, 605
Tru9I	TTAA	2 cut(s)	516, 605
TseI	GCWGC	2 cut(s)	191, 313
TspDTI	ATGAA	4 cut(s)	291, 504, 576, 641
TspGWI	ACGGA	1 cut(s)	98
Tth111I	GACNNNGTC	1 cut(s)	419
VpaK11BI	GGWCC	1 cut(s)	421
XapI	RAATTY	1 cut(s)	457
XceI	RCATGY	1 cut(s)	359
XmiI	GTMKAC	4 cut(s)	753, 804, 855, 1008
ZraI	GACGTC	1 cut(s)	802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.