Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002558

Physical Location & Seq

Genomic Coordinates Forward (+)

8695374 .. 8696643

Gene Structure 1270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G20142.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGAATTCAAGTCCTAAAATGAAACACGATGTGTTCATAAGTTTCAGGAGCAAAGACACTCGTGACAACTTCGTAAGCCATCTCTGTGGCTGTCTACGTAGGAAACGGATCAAAACCTTCTTGTATGACGAACTACCAGCTGACGAGAGGTATGAAGAGTCGTTAAAAGCAATTGAAGTATCGAAAATTTCAGTCATTGTGTTCTCGGAAAACTTTGGGGATTCGAGATGGTGTTTAGATGAAGTTGTAGCCATCTTGAAATGCAAAGAAAAGTTTGGTCAGATTGTGATACCTGTCCTTTACCATGTTGATCCTCTCGACATTGAAAATCAGACAGGAAGTTTTGGAGATGCCTTTGCTAAGCGACGGGATAAAGCCGAACAGCTTCAAGAATGGAAAGATAGTTTTACAGAAGCCATTAACCTCCCTGGATGGAGTACTGCTTATTTGAGTGATGAGGAGATGTTGGTGAATGGAATAGCTCGGGAAATCGAGAACAAACTGCTAAGAGCCTCAAGAACGAAGGTTATGATTGAGTGGTCTTTAGTCATCACCAACCTCATGTTGGAGATACCTTCTTCTGTTTTCGACCAGATCTCCTCTGCACATAAACCTTTATATGCATTGGCTGCAATGTCAATGTCATTGTTATCATGTCTACTTTGCATTGTAGATCTCTTACACAAAGGCAGAGTTGACAGAGTTGTGTGGAAGTGGACTTGGCCCATTCCTTGGTTTCACTATCAAACTCAAAGATCAAACAGATTTGGTAGTTTTCCAGAGATGCTAGGCTTGGTTTGTGCCTTGTGCCAAACAACTATCACTGCCGTTAACTATTCATTCATCACACGTAGAGATGATACTCCCATCAAATTCTCGGTTTGGCCAATCATGTTTGCGCTAGGTTTACTTTGCACTTTGTTGATTAAAAGATTTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

313

Amino Acids

36.2

Weight (kDa)

8.31

Isoelectric Point (pI)

49.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	8 - 172	1e-43	TIR domain
TIR_2	PF13676	11 - 111	3.8e-14	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20142
fragaria_vesca	FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730
malus_domestica	MD05G1140000.v1.1
prunus_persica	Prupe.1G120200_v2.0.a1
pyrus_communis	pycom03g08420 pycom04g02910 pycom10g12010 pycom10g12080 pycom10g12100
rosa_chinensis	RchiOBHm_Chr3g0451631 RchiOBHm_Chr5g0026391 RchiOBHm_Chr7g0241711
rosa_laevigata	RLG00000004786 RLG00000004787 RLG00000029480
rosa_multiflora	Rmu_co8097864.1_g000001 Rmu_sc0001689.1_g000015 Rmu_sc0002354.1_g000038 Rmu_sc0003469.1_g000013 Rmu_sc0006326.1_g000044 Rmu_sc0038436.1_g000001 Rmu_sc0043107.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053220 Rroxscaffold_3G00218740 Rroxscaffold_3G00267480 Rroxscaffold_4G00317010 Rroxscaffold_6G00397670 Rroxscaffold_6G00397680
rosa_rugosa	Rorug01G0112600 Rorug05G0000700 Rorug06G0259600 Rorug07G0346700
rosa_samantha	Rh7AG085700
rosa_wichuraiana	Rw1G011340 Rw7G007550 Rw7G042350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	732
AccI	GTMKAC	2 cut(s)	94, 658
AclWI	GGATC	2 cut(s)	116, 305
AcoI	YGGCCR	1 cut(s)	884
AcsI	RAATTY	3 cut(s)	4, 186, 872
AdeI	CACNNNGTG	1 cut(s)	31
AfaI	GTAC	1 cut(s)	439
AfiI	CCNNNNNNNGG	2 cut(s)	565, 732
AflIII	ACRYGT	1 cut(s)	848
AgsI	TTSAA	5 cut(s)	9, 176, 259, 326, 389
AjnI	CCWGG	1 cut(s)	427
AluBI	AGCT	3 cut(s)	140, 385, 482
AluI	AGCT	3 cut(s)	140, 385, 482
AlwI	GGATC	2 cut(s)	116, 305
Ama87I	CYCGRG	1 cut(s)	483
AoxI	GGCC	2 cut(s)	722, 884
ApeKI	GCWGC	1 cut(s)	629
ApoI	RAATTY	3 cut(s)	4, 186, 872
Asp700I	GAANNNNTTC	1 cut(s)	384
AspLEI	GCGC	1 cut(s)	901
AspS9I	GGNCC	1 cut(s)	723
AsuHPI	GGTGA	2 cut(s)	481, 544
AvaI	CYCGRG	1 cut(s)	483
BalI	TGGCCA	1 cut(s)	886
BauI	CACGAG	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	616
BccI	CCATC	5 cut(s)	87, 222, 260, 426, 875
BceAI	ACGGC	1 cut(s)	812
BciT130I	CCWGG	1 cut(s)	429
BfaI	CTAG	2 cut(s)	788, 902
BglII	AGATCT	2 cut(s)	594, 673
BisI	GCNGC	1 cut(s)	630
BlpI	GCTNAGC	1 cut(s)	360
BlsI	GCNGC	1 cut(s)	631
BmcAI	AGTACT	1 cut(s)	439
Bme1390I	CCNGG	1 cut(s)	429
BmeT110I	CYCGRG	1 cut(s)	483
BmgT120I	GGNCC	1 cut(s)	723
BmrFI	CCNGG	1 cut(s)	429
BmsI	GCATC	2 cut(s)	340, 774
Bpu1102I	GCTNAGC	1 cut(s)	360
BpuEI	CTTGAG	1 cut(s)	499
BsaAI	YACGTR	2 cut(s)	98, 851
BsaJI	CCNNGG	2 cut(s)	427, 731
BsaXI	ACNNNNNCTCC	2 cut(s)	581, 611
Bsc4I	CCNNNNNNNGG	2 cut(s)	565, 732
Bse3DI	GCAATG	1 cut(s)	639
BseBI	CCWGG	1 cut(s)	429
BseDI	CCNNGG	2 cut(s)	427, 731
BseGI	GGATG	1 cut(s)	437
BseLI	CCNNNNNNNGG	2 cut(s)	565, 732
BseMI	GCAATG	1 cut(s)	639
BseRI	GAGGAG	2 cut(s)	473, 589
BseXI	GCAGC	1 cut(s)	616
BsgI	GTGCAG	1 cut(s)	588
BshFI	GGCC	2 cut(s)	724, 886
BsiHKCI	CYCGRG	1 cut(s)	483
BslI	CCNNNNNNNGG	2 cut(s)	565, 732
BsnI	GGCC	2 cut(s)	724, 886
BsoBI	CYCGRG	1 cut(s)	483
Bsp143I	GATC	5 cut(s)	108, 310, 594, 673, 755
Bsp1720I	GCTNAGC	1 cut(s)	360
BspANI	GGCC	2 cut(s)	724, 886
BspPI	GGATC	2 cut(s)	116, 305
BsrDI	GCAATG	1 cut(s)	639
BssECI	CCNNGG	2 cut(s)	427, 731
BssMI	GATC	5 cut(s)	108, 310, 594, 673, 755
BssSI	CACGAG	1 cut(s)	60
BssT1I	CCWWGG	1 cut(s)	731
Bst2BI	CACGAG	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	429
Bst6I	CTCTTC	1 cut(s)	150
BstAPI	GCANNNNNTGC	1 cut(s)	629
BstBAI	YACGTR	2 cut(s)	98, 851
BstDEI	CTNAG	2 cut(s)	360, 506
BstF5I	GGATG	1 cut(s)	437
BstHHI	GCGC	1 cut(s)	901
BstKTI	GATC	5 cut(s)	111, 313, 597, 676, 758
BstMBI	GATC	5 cut(s)	108, 310, 594, 673, 755
BstMWI	GCNNNNNNNGC	1 cut(s)	629
BstNI	CCWGG	1 cut(s)	429
BstSCI	CCNGG	1 cut(s)	427
BstSNI	TACGTA	1 cut(s)	98
BstV1I	GCAGC	1 cut(s)	616
BstX2I	RGATCY	2 cut(s)	594, 673
BstXI	CCANNNNNNTGG	1 cut(s)	86
BstYI	RGATCY	2 cut(s)	594, 673
BsuRI	GGCC	2 cut(s)	724, 886
BtsCI	GGATG	1 cut(s)	437
BtsI	GCAGTG	1 cut(s)	822
BtsIMutI	CAGTG	1 cut(s)	822
CfoI	GCGC	1 cut(s)	901
Cfr13I	GGNCC	1 cut(s)	723
Csp6I	GTAC	1 cut(s)	438
CviAII	CATG	4 cut(s)	305, 562, 654, 892
CviQI	GTAC	1 cut(s)	438
DdeI	CTNAG	2 cut(s)	360, 506
DpnI	GATC	5 cut(s)	110, 312, 596, 675, 757
DpnII	GATC	5 cut(s)	108, 310, 594, 673, 755
DraIII	CACNNNGTG	1 cut(s)	31
EaeI	YGGCCR	1 cut(s)	884
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Eco105I	TACGTA	1 cut(s)	98
Eco130I	CCWWGG	1 cut(s)	731
Eco88I	CYCGRG	1 cut(s)	483
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	427
EcoT14I	CCWWGG	1 cut(s)	731
EcoT22I	ATGCAT	1 cut(s)	625
ErhI	CCWWGG	1 cut(s)	731
FaeI	CATG	4 cut(s)	308, 565, 657, 895
FatI	CATG	4 cut(s)	304, 561, 653, 891
FblI	GTMKAC	2 cut(s)	94, 658
Fnu4HI	GCNGC	1 cut(s)	630
FokI	GGATG	1 cut(s)	444
Fsp4HI	GCNGC	1 cut(s)	630
FspBI	CTAG	2 cut(s)	788, 902
GlaI	GCGC	1 cut(s)	900
GluI	GCNGC	1 cut(s)	630
HaeIII	GGCC	2 cut(s)	724, 886
HhaI	GCGC	1 cut(s)	901
Hin1II	CATG	4 cut(s)	308, 565, 657, 895
Hin6I	GCGC	1 cut(s)	899
HinP1I	GCGC	1 cut(s)	899
HincII	GTYRAC	2 cut(s)	697, 832
HindII	GTYRAC	2 cut(s)	697, 832
HinfI	GANTC	2 cut(s)	158, 221
HpaI	GTTAAC	1 cut(s)	832
HphI	GGTGA	2 cut(s)	481, 544
Hpy166II	GTNNAC	6 cut(s)	95, 659, 697, 717, 832, 908
Hpy188I	TCNGA	3 cut(s)	208, 282, 333
Hpy8I	GTNNAC	6 cut(s)	95, 659, 697, 717, 832, 908
Hpy99I	CGWCG	1 cut(s)	369
HpyAV	CCTTC	3 cut(s)	127, 517, 585
HpyCH4IV	ACGT	2 cut(s)	97, 850
HpyCH4V	TGCA	6 cut(s)	264, 605, 623, 632, 666, 915
HpyF10VI	GCNNNNNNNGC	1 cut(s)	629
HpyF3I	CTNAG	2 cut(s)	360, 506
HpySE526I	ACGT	2 cut(s)	97, 850
Hsp92II	CATG	4 cut(s)	308, 565, 657, 895
HspAI	GCGC	1 cut(s)	899
KspAI	GTTAAC	1 cut(s)	832
Kzo9I	GATC	5 cut(s)	108, 310, 594, 673, 755
LmnI	GCTCC	1 cut(s)	48
LpnPI	CCDG	8 cut(s)	31, 150, 306, 321, 414, 441, 605, 792
Lsp1109I	GCAGC	1 cut(s)	616
LweI	GCATC	2 cut(s)	340, 774
MaeI	CTAG	2 cut(s)	788, 902
MaeII	ACGT	2 cut(s)	97, 850
MaeIII	GTNAC	1 cut(s)	62
MalI	GATC	5 cut(s)	110, 312, 596, 675, 757
MboI	GATC	5 cut(s)	108, 310, 594, 673, 755
MboII	GAAGA	2 cut(s)	167, 570
MfeI	CAATTG	1 cut(s)	171
MflI	RGATCY	2 cut(s)	594, 673
MlsI	TGGCCA	1 cut(s)	886
MluCI	AATT	4 cut(s)	4, 171, 186, 872
MluNI	TGGCCA	1 cut(s)	886
MlyI	GAGTC	1 cut(s)	167
MmeI	TCCRAC	1 cut(s)	546
MnlI	CCTC	7 cut(s)	141, 324, 434, 451, 523, 569, 610
Mox20I	TGGCCA	1 cut(s)	886
Mph1103I	ATGCAT	1 cut(s)	625
MroXI	GAANNNNTTC	1 cut(s)	384
MscI	TGGCCA	1 cut(s)	886
MseI	TTAA	4 cut(s)	164, 420, 831, 927
MslI	CAYNNNNRTG	1 cut(s)	84
Msp20I	TGGCCA	1 cut(s)	886
MspA1I	CMGCKG	1 cut(s)	140
MspR9I	CCNGG	1 cut(s)	429
MunI	CAATTG	1 cut(s)	171
MvaI	CCWGG	1 cut(s)	429
MwoI	GCNNNNNNNGC	1 cut(s)	629
NdeII	GATC	5 cut(s)	108, 310, 594, 673, 755
NlaIII	CATG	4 cut(s)	308, 565, 657, 895
NmuCI	GTSAC	1 cut(s)	62
NsiI	ATGCAT	1 cut(s)	625
PdmI	GAANNNNTTC	1 cut(s)	384
PfeI	GAWTC	1 cut(s)	221
PflMI	CCANNNNNTGG	1 cut(s)	732
PkrI	GCNGC	1 cut(s)	631
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
Ppu21I	YACGTR	2 cut(s)	98, 851
Psp6I	CCWGG	1 cut(s)	427
PspGI	CCWGG	1 cut(s)	427
PspPI	GGNCC	1 cut(s)	723
PsuI	RGATCY	2 cut(s)	594, 673
PvuII	CAGCTG	1 cut(s)	140
RsaI	GTAC	1 cut(s)	439
RsaNI	GTAC	1 cut(s)	438
RseI	CAYNNNNRTG	1 cut(s)	84
SaqAI	TTAA	4 cut(s)	164, 420, 831, 927
SatI	GCNGC	1 cut(s)	630
Sau3AI	GATC	5 cut(s)	108, 310, 594, 673, 755
Sau96I	GGNCC	1 cut(s)	723
ScaI	AGTACT	1 cut(s)	439
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	1 cut(s)	429
SfaNI	GCATC	2 cut(s)	340, 774
SmiMI	CAYNNNNRTG	1 cut(s)	84
SmlI	CTYRAG	1 cut(s)	514
SmoI	CTYRAG	1 cut(s)	514
SnaBI	TACGTA	1 cut(s)	98
Sse9I	AATT	4 cut(s)	4, 171, 186, 872
SspMI	CTAG	2 cut(s)	788, 902
StyD4I	CCNGG	1 cut(s)	427
StyI	CCWWGG	1 cut(s)	731
TaiI	ACGT	2 cut(s)	100, 853
TaqI	TCGA	5 cut(s)	182, 224, 318, 492, 588
TasI	AATT	4 cut(s)	4, 171, 186, 872
TatI	WGTACW	1 cut(s)	437
TfiI	GAWTC	1 cut(s)	221
Tru1I	TTAA	4 cut(s)	164, 420, 831, 927
Tru9I	TTAA	4 cut(s)	164, 420, 831, 927
TscAI	CASTG	1 cut(s)	829
TseFI	GTSAC	1 cut(s)	62
TseI	GCWGC	1 cut(s)	629
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	7 cut(s)	17, 25, 35, 168, 255, 828, 832
TspGWI	ACGGA	1 cut(s)	121
TspRI	CASTG	1 cut(s)	829
Van91I	CCANNNNNTGG	1 cut(s)	732
XapI	RAATTY	3 cut(s)	4, 186, 872
XcmI	CCANNNNNNNNNTGG	1 cut(s)	562
XmiI	GTMKAC	2 cut(s)	94, 658
XmnI	GAANNNNTTC	1 cut(s)	384
XspI	CTAG	2 cut(s)	788, 902
ZrmI	AGTACT	1 cut(s)	439
Zsp2I	ATGCAT	1 cut(s)	625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.