Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038436.1

Orthogroup ID

OG0002558

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1724

Gene Structure 1723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038436.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atgccccgtaacctgttcgaccaaattcccaagaccaacatacgccgctggtttgctctcatcggagcctacgcctgctgtgggatttaccagcaagccatggatgtgagaagtgagatgcattcatgcaaagagcggttcagaggcgatgagacccgcaatacctttaccagctatctttttaaggctttagacaggaagaaaatcaacacatgccttgattacgaacttgagagcggagatgaaattggacctgcccttctgaaagcaattgaggaatcaaagatttccgtgatcattttctctcaaaactatgctacttccacttggtgcttggatgaacttgtgcatatacttgaatgcaagaaaataaatcagcagtttgttatacccgttttttacagaatagatccatcacatgtacgccaccagagggagggttatgcaacttcatttgctaaacatgaagagcgctttaaggataggatggaccaggtgctcaagtggaagggtgctttgacaacagcagcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

177

Amino Acids

20.7

Weight (kDa)

8.5

Isoelectric Point (pI)

52.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20142
fragaria_vesca	FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730
malus_domestica	MD05G1140000.v1.1
prunus_persica	Prupe.1G120200_v2.0.a1
pyrus_communis	pycom03g08420 pycom04g02910 pycom10g12010 pycom10g12080 pycom10g12100
rosa_chinensis	RchiOBHm_Chr3g0451631 RchiOBHm_Chr5g0026391 RchiOBHm_Chr7g0241711
rosa_laevigata	RLG00000004786 RLG00000004787 RLG00000029480
rosa_multiflora	Rmu_co8097864.1_g000001 Rmu_sc0001689.1_g000015 Rmu_sc0002354.1_g000038 Rmu_sc0003469.1_g000013 Rmu_sc0006326.1_g000044 Rmu_sc0038436.1_g000001 Rmu_sc0043107.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053220 Rroxscaffold_3G00218740 Rroxscaffold_3G00267480 Rroxscaffold_4G00317010 Rroxscaffold_6G00397670 Rroxscaffold_6G00397680
rosa_rugosa	Rorug01G0112600 Rorug05G0000700 Rorug06G0259600 Rorug07G0346700
rosa_samantha	Rh7AG085700
rosa_wichuraiana	Rw1G011340 Rw7G007550 Rw7G042350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	262
AccBSI	CCGCTC	2 cut(s)	136, 237
AciI	CCGC	4 cut(s)	46, 136, 157, 237
AclWI	GGATC	1 cut(s)	404
AcsI	RAATTY	1 cut(s)	24
AdeI	CACNNNGTG	1 cut(s)	330
AfaI	GTAC	1 cut(s)	423
AfeI	AGCGCT	1 cut(s)	473
AfiI	CCNNNNNNNGG	3 cut(s)	81, 433, 436
AflIII	ACRYGT	1 cut(s)	418
AgsI	TTSAA	1 cut(s)	359
AjnI	CCWGG	1 cut(s)	492
AluBI	AGCT	1 cut(s)	174
AluI	AGCT	1 cut(s)	174
Alw21I	GWGCWC	1 cut(s)	501
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	1 cut(s)	404
Aor51HI	AGCGCT	1 cut(s)	473
ApeKI	GCWGC	1 cut(s)	527
ApoI	RAATTY	1 cut(s)	24
AspLEI	GCGC	1 cut(s)	474
AspS9I	GGNCC	2 cut(s)	251, 490
AvaII	GGWCC	2 cut(s)	251, 490
Bbv12I	GWGCWC	1 cut(s)	501
BccI	CCATC	2 cut(s)	421, 481
BciT130I	CCWGG	1 cut(s)	494
BclI	TGATCA	1 cut(s)	294
BcoDI	GTCTC	1 cut(s)	146
BfoI	RGCGCY	1 cut(s)	475
BfuAI	ACCTGC	1 cut(s)	262
BisI	GCNGC	2 cut(s)	46, 528
BlsI	GCNGC	2 cut(s)	47, 529
Bme1390I	CCNGG	1 cut(s)	494
Bme18I	GGWCC	2 cut(s)	251, 490
BmgT120I	GGNCC	2 cut(s)	251, 490
BmiI	GGNNCC	1 cut(s)	67
BmrFI	CCNGG	1 cut(s)	494
BmsI	GCATC	1 cut(s)	108
BpuEI	CTTGAG	2 cut(s)	251, 485
BsaI	GGTCTC	1 cut(s)	146
BsaJI	CCNNGG	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	3 cut(s)	81, 433, 436
BseBI	CCWGG	1 cut(s)	494
BseDI	CCNNGG	1 cut(s)	99
BseGI	GGATG	3 cut(s)	109, 343, 492
BseLI	CCNNNNNNNGG	3 cut(s)	81, 433, 436
BsiHKAI	GWGCWC	1 cut(s)	501
BslI	CCNNNNNNNGG	3 cut(s)	81, 433, 436
BsmAI	GTCTC	1 cut(s)	146
BsmI	GAATGC	2 cut(s)	121, 365
Bso31I	GGTCTC	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	501
Bsp143I	GATC	2 cut(s)	294, 409
Bsp19I	CCATGG	1 cut(s)	99
BspACI	CCGC	4 cut(s)	46, 136, 157, 237
BspLI	GGNNCC	1 cut(s)	67
BspMI	ACCTGC	1 cut(s)	262
BspPI	GGATC	1 cut(s)	404
BspQI	GCTCTTC	1 cut(s)	462
BspTNI	GGTCTC	1 cut(s)	146
BsrBI	CCGCTC	2 cut(s)	136, 237
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	2 cut(s)	294, 409
BssT1I	CCWWGG	1 cut(s)	99
Bst2UI	CCWGG	1 cut(s)	494
Bst6I	CTCTTC	1 cut(s)	462
BstC8I	GCNNGC	2 cut(s)	76, 96
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	3 cut(s)	109, 343, 492
BstH2I	RGCGCY	1 cut(s)	475
BstHHI	GCGC	1 cut(s)	474
BstKTI	GATC	2 cut(s)	297, 412
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	2 cut(s)	294, 409
BstNI	CCWGG	1 cut(s)	494
BstNSI	RCATGY	2 cut(s)	216, 422
BstSCI	CCNGG	1 cut(s)	492
BstX2I	RGATCY	1 cut(s)	409
BstYI	RGATCY	1 cut(s)	409
BtgI	CCRYGG	1 cut(s)	99
BtgZI	GCGATG	1 cut(s)	162
BtsCI	GGATG	3 cut(s)	109, 343, 492
BveI	ACCTGC	1 cut(s)	262
Cac8I	GCNNGC	2 cut(s)	76, 96
CfoI	GCGC	1 cut(s)	474
Cfr13I	GGNCC	2 cut(s)	251, 490
CsiI	ACCWGGT	1 cut(s)	492
Csp6I	GTAC	1 cut(s)	422
CviAII	CATG	5 cut(s)	100, 126, 213, 419, 464
CviJI	RGCY	5 cut(s)	68, 98, 174, 188, 530
CviKI_1	RGCY	5 cut(s)	68, 98, 174, 188, 530
CviQI	GTAC	1 cut(s)	422
DpnI	GATC	2 cut(s)	296, 411
DpnII	GATC	2 cut(s)	294, 409
DraIII	CACNNNGTG	1 cut(s)	330
Eam1104I	CTCTTC	1 cut(s)	462
EarI	CTCTTC	1 cut(s)	462
Eco130I	CCWWGG	1 cut(s)	99
Eco31I	GGTCTC	1 cut(s)	146
Eco47I	GGWCC	2 cut(s)	251, 490
Eco47III	AGCGCT	1 cut(s)	473
EcoRII	CCWGG	1 cut(s)	492
EcoT14I	CCWWGG	1 cut(s)	99
EcoT22I	ATGCAT	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	5 cut(s)	103, 129, 216, 422, 467
FatI	CATG	5 cut(s)	99, 125, 212, 418, 463
FauI	CCCGC	1 cut(s)	164
FbaI	TGATCA	1 cut(s)	294
Fnu4HI	GCNGC	2 cut(s)	46, 528
FokI	GGATG	3 cut(s)	116, 350, 499
Fsp4HI	GCNGC	2 cut(s)	46, 528
GlaI	GCGC	1 cut(s)	473
GluI	GCNGC	2 cut(s)	46, 528
HaeII	RGCGCY	1 cut(s)	475
HhaI	GCGC	1 cut(s)	474
Hin1II	CATG	5 cut(s)	103, 129, 216, 422, 467
Hin6I	GCGC	1 cut(s)	472
HinP1I	GCGC	1 cut(s)	472
HinfI	GANTC	1 cut(s)	278
Hpy188I	TCNGA	3 cut(s)	65, 143, 264
HpyAV	CCTTC	2 cut(s)	269, 502
HpyCH4V	TGCA	5 cut(s)	121, 129, 349, 363, 446
Hsp92II	CATG	5 cut(s)	103, 129, 216, 422, 467
HspAI	GCGC	1 cut(s)	472
Ksp22I	TGATCA	1 cut(s)	294
Kzo9I	GATC	2 cut(s)	294, 409
LguI	GCTCTTC	1 cut(s)	462
LmnI	GCTCC	1 cut(s)	65
LweI	GCATC	1 cut(s)	108
MabI	ACCWGGT	1 cut(s)	492
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	2 cut(s)	296, 411
MbiI	CCGCTC	2 cut(s)	136, 237
MboI	GATC	2 cut(s)	294, 409
MboII	GAAGA	2 cut(s)	211, 479
MfeI	CAATTG	1 cut(s)	270
MflI	RGATCY	1 cut(s)	409
MhlI	GDGCHC	1 cut(s)	501
MluCI	AATT	3 cut(s)	24, 246, 270
MnlI	CCTC	4 cut(s)	137, 268, 426, 430
Mph1103I	ATGCAT	1 cut(s)	123
MseI	TTAA	2 cut(s)	183, 477
MslI	CAYNNNNRTG	1 cut(s)	104
MspA1I	CMGCKG	1 cut(s)	48
MspR9I	CCNGG	1 cut(s)	494
MunI	CAATTG	1 cut(s)	270
Mva1269I	GAATGC	2 cut(s)	121, 365
MvaI	CCWGG	1 cut(s)	494
NcoI	CCATGG	1 cut(s)	99
NdeII	GATC	2 cut(s)	294, 409
NlaIII	CATG	5 cut(s)	103, 129, 216, 422, 467
NlaIV	GGNNCC	1 cut(s)	67
NsiI	ATGCAT	1 cut(s)	123
NspI	RCATGY	2 cut(s)	216, 422
PciI	ACATGT	1 cut(s)	418
PciSI	GCTCTTC	1 cut(s)	462
PctI	GAATGC	2 cut(s)	121, 365
PfeI	GAWTC	1 cut(s)	278
PkrI	GCNGC	2 cut(s)	47, 529
PscI	ACATGT	1 cut(s)	418
Psp6I	CCWGG	1 cut(s)	492
PspGI	CCWGG	1 cut(s)	492
PspN4I	GGNNCC	1 cut(s)	67
PspPI	GGNCC	2 cut(s)	251, 490
PsuI	RGATCY	1 cut(s)	409
RsaI	GTAC	1 cut(s)	423
RsaNI	GTAC	1 cut(s)	422
RseI	CAYNNNNRTG	1 cut(s)	104
SapI	GCTCTTC	1 cut(s)	462
SaqAI	TTAA	2 cut(s)	183, 477
SatI	GCNGC	2 cut(s)	46, 528
Sau3AI	GATC	2 cut(s)	294, 409
Sau96I	GGNCC	2 cut(s)	251, 490
ScrFI	CCNGG	1 cut(s)	494
SduI	GDGCHC	1 cut(s)	501
SetI	ASST	5 cut(s)	15, 167, 176, 256, 498
SexAI	ACCWGGT	1 cut(s)	492
SfaNI	GCATC	1 cut(s)	108
SinI	GGWCC	2 cut(s)	251, 490
SmiMI	CAYNNNNRTG	1 cut(s)	104
SmlI	CTYRAG	2 cut(s)	230, 500
SmoI	CTYRAG	2 cut(s)	230, 500
Sse9I	AATT	3 cut(s)	24, 246, 270
SsiI	CCGC	4 cut(s)	46, 136, 157, 237
StyD4I	CCNGG	1 cut(s)	492
StyI	CCWWGG	1 cut(s)	99
TaqI	TCGA	1 cut(s)	18
TasI	AATT	3 cut(s)	24, 246, 270
TauI	GCSGC	1 cut(s)	48
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	2 cut(s)	183, 477
Tru9I	TTAA	2 cut(s)	183, 477
TseI	GCWGC	1 cut(s)	527
TspDTI	ATGAA	5 cut(s)	114, 258, 354, 441, 480
TspGWI	ACGGA	1 cut(s)	280
VpaK11BI	GGWCC	2 cut(s)	251, 490
XapI	RAATTY	1 cut(s)	24
XceI	RCATGY	2 cut(s)	216, 422
XcmI	CCANNNNNNNNNTGG	1 cut(s)	331
Zsp2I	ATGCAT	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.