Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002558

Physical Location & Seq

Genomic Coordinates Reverse (-)

19364406 .. 19365329

Gene Structure 924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00397670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGCTTCTCCTTCTTGTTCTTCTGCGCCTGACAGCTTTAAGTATGATGTATTTCTTAGTTTTAGAGGGGAGGACACCCGCACGACTTTTACGAGTCATCTTTGGAAGGTTTTAGATAGAAGTCAAATAAATACGTACATGGATAATGAAATTGAGAGGGGAGAGGAAATTGCACCATCCCTTCTCCAAGCAATAGAGGAATCAAAACTTTCGGCAGTCATTTTGTCACAAAACTATGCTTCTTCCACATGGTGCTTGGATGAACTTGCTCATATATTGGAATCCAAAGAAAGACACCAACAATCGGTTATACCCATTTTTTATGGGGTAGATCCATCACATGTACGAAATCAAAGGAAGAGTTATGCAGCTGCATTTGTTCAACATGAGAAACATTTCCAAGGACTCGCCAGACAAGGTACTCAAGTGGAGGGATGCTTTAACCAAAGCTTCCAAGCTAGCTGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

156

Amino Acids

17.77

Weight (kDa)

5.64

Isoelectric Point (pI)

63.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	14 - 134	1.3e-44	TIR domain
TIR_2	PF13676	17 - 125	6.1e-16	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20142
fragaria_vesca	FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730
malus_domestica	MD05G1140000.v1.1
prunus_persica	Prupe.1G120200_v2.0.a1
pyrus_communis	pycom03g08420 pycom04g02910 pycom10g12010 pycom10g12080 pycom10g12100
rosa_chinensis	RchiOBHm_Chr3g0451631 RchiOBHm_Chr5g0026391 RchiOBHm_Chr7g0241711
rosa_laevigata	RLG00000004786 RLG00000004787 RLG00000029480
rosa_multiflora	Rmu_co8097864.1_g000001 Rmu_sc0001689.1_g000015 Rmu_sc0002354.1_g000038 Rmu_sc0003469.1_g000013 Rmu_sc0006326.1_g000044 Rmu_sc0038436.1_g000001 Rmu_sc0043107.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053220 Rroxscaffold_3G00218740 Rroxscaffold_3G00267480 Rroxscaffold_4G00317010 Rroxscaffold_6G00397670 Rroxscaffold_6G00397680
rosa_rugosa	Rorug01G0112600 Rorug05G0000700 Rorug06G0259600 Rorug07G0346700
rosa_samantha	Rh7AG085700
rosa_wichuraiana	Rw1G011340 Rw7G007550 Rw7G042350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	79
AclWI	GGATC	1 cut(s)	326
AdeI	CACNNNGTG	1 cut(s)	252
AfaI	GTAC	3 cut(s)	137, 345, 421
AfiI	CCNNNNNNNGG	1 cut(s)	304
AflIII	ACRYGT	1 cut(s)	340
AgsI	TTSAA	1 cut(s)	383
AluBI	AGCT	5 cut(s)	36, 371, 450, 458, 462
AluI	AGCT	5 cut(s)	36, 371, 450, 458, 462
AlwI	GGATC	1 cut(s)	326
ApeKI	GCWGC	2 cut(s)	368, 371
Asp700I	GAANNNNTTC	1 cut(s)	395
AspLEI	GCGC	1 cut(s)	28
AsuNHI	GCTAGC	1 cut(s)	458
BaeI	ACNNNNGTAYC	2 cut(s)	411, 444
BbvI	GCAGC	2 cut(s)	358, 380
BccI	CCATC	2 cut(s)	184, 343
BfaI	CTAG	1 cut(s)	459
BisI	GCNGC	2 cut(s)	369, 372
BlsI	GCNGC	2 cut(s)	370, 373
BmsI	GCATC	1 cut(s)	425
BmtI	GCTAGC	1 cut(s)	462
BpuEI	CTTGAG	1 cut(s)	408
BsaAI	YACGTR	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	400
Bsc4I	CCNNNNNNNGG	1 cut(s)	304
BseDI	CCNNGG	1 cut(s)	400
BseGI	GGATG	3 cut(s)	176, 265, 440
BseLI	CCNNNNNNNGG	1 cut(s)	304
BseXI	GCAGC	2 cut(s)	358, 380
BseYI	CCCAGC	1 cut(s)	462
BslI	CCNNNNNNNGG	1 cut(s)	304
Bsp143I	GATC	1 cut(s)	331
BspACI	CCGC	1 cut(s)	79
BspOI	GCTAGC	1 cut(s)	462
BspPI	GGATC	1 cut(s)	326
BssECI	CCNNGG	1 cut(s)	400
BssMI	GATC	1 cut(s)	331
BssT1I	CCWWGG	1 cut(s)	400
Bst6I	CTCTTC	1 cut(s)	353
BstBAI	YACGTR	1 cut(s)	135
BstC8I	GCNNGC	1 cut(s)	460
BstDEI	CTNAG	1 cut(s)	56
BstF5I	GGATG	3 cut(s)	176, 265, 440
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	1 cut(s)	334
BstMBI	GATC	1 cut(s)	331
BstNSI	RCATGY	1 cut(s)	344
BstSNI	TACGTA	1 cut(s)	135
BstV1I	GCAGC	2 cut(s)	358, 380
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BtsCI	GGATG	3 cut(s)	176, 265, 440
Cac8I	GCNNGC	1 cut(s)	460
CfoI	GCGC	1 cut(s)	28
Csp6I	GTAC	3 cut(s)	136, 344, 420
CviAII	CATG	4 cut(s)	139, 249, 341, 386
CviJI	RGCY	6 cut(s)	5, 36, 371, 450, 458, 462
CviKI_1	RGCY	6 cut(s)	5, 36, 371, 450, 458, 462
CviQI	GTAC	3 cut(s)	136, 344, 420
DdeI	CTNAG	1 cut(s)	56
DpnI	GATC	1 cut(s)	333
DpnII	GATC	1 cut(s)	331
DraIII	CACNNNGTG	1 cut(s)	252
Eam1104I	CTCTTC	1 cut(s)	353
EarI	CTCTTC	1 cut(s)	353
Eco105I	TACGTA	1 cut(s)	135
Eco130I	CCWWGG	1 cut(s)	400
EcoT14I	CCWWGG	1 cut(s)	400
ErhI	CCWWGG	1 cut(s)	400
FaeI	CATG	4 cut(s)	142, 252, 344, 389
FatI	CATG	4 cut(s)	138, 248, 340, 385
FauI	CCCGC	1 cut(s)	86
Fnu4HI	GCNGC	2 cut(s)	369, 372
FokI	GGATG	3 cut(s)	163, 272, 447
Fsp4HI	GCNGC	2 cut(s)	369, 372
FspBI	CTAG	1 cut(s)	459
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	2 cut(s)	369, 372
GsaI	CCCAGC	1 cut(s)	466
HhaI	GCGC	1 cut(s)	28
Hin1II	CATG	4 cut(s)	142, 252, 344, 389
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HindIII	AAGCTT	1 cut(s)	448
HinfI	GANTC	4 cut(s)	94, 200, 281, 405
HpyAV	CCTTC	3 cut(s)	21, 100, 191
HpyCH4IV	ACGT	1 cut(s)	134
HpyCH4V	TGCA	3 cut(s)	173, 368, 374
HpyF3I	CTNAG	1 cut(s)	56
HpySE526I	ACGT	1 cut(s)	134
Hsp92II	CATG	4 cut(s)	142, 252, 344, 389
HspAI	GCGC	1 cut(s)	26
Kzo9I	GATC	1 cut(s)	331
LpnPI	CCDG	3 cut(s)	42, 424, 448
Lsp1109I	GCAGC	2 cut(s)	358, 380
LweI	GCATC	1 cut(s)	425
MaeI	CTAG	1 cut(s)	459
MaeII	ACGT	1 cut(s)	134
MaeIII	GTNAC	1 cut(s)	225
MalI	GATC	1 cut(s)	333
MboI	GATC	1 cut(s)	331
MboII	GAAGA	3 cut(s)	12, 234, 370
MflI	RGATCY	1 cut(s)	331
MluCI	AATT	2 cut(s)	150, 168
MlyI	GAGTC	2 cut(s)	103, 399
MnlI	CCTC	6 cut(s)	59, 64, 150, 157, 190, 424
MroXI	GAANNNNTTC	1 cut(s)	395
MseI	TTAA	2 cut(s)	39, 441
MspA1I	CMGCKG	1 cut(s)	371
NdeII	GATC	1 cut(s)	331
NheI	GCTAGC	1 cut(s)	458
NlaIII	CATG	4 cut(s)	142, 252, 344, 389
NmuCI	GTSAC	1 cut(s)	225
NspI	RCATGY	1 cut(s)	344
PciI	ACATGT	1 cut(s)	340
PcsI	WCGNNNNNNNCGW	1 cut(s)	89
PdmI	GAANNNNTTC	1 cut(s)	395
PfeI	GAWTC	2 cut(s)	200, 281
PkrI	GCNGC	2 cut(s)	370, 373
PleI	GAGTC	2 cut(s)	102, 399
PpsI	GAGTC	2 cut(s)	102, 399
Ppu21I	YACGTR	1 cut(s)	135
PscI	ACATGT	1 cut(s)	340
PspFI	CCCAGC	1 cut(s)	462
PsuI	RGATCY	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	371
RsaI	GTAC	3 cut(s)	137, 345, 421
RsaNI	GTAC	3 cut(s)	136, 344, 420
SaqAI	TTAA	2 cut(s)	39, 441
SatI	GCNGC	2 cut(s)	369, 372
Sau3AI	GATC	1 cut(s)	331
SchI	GAGTC	2 cut(s)	103, 399
SetI	ASST	8 cut(s)	38, 111, 137, 373, 421, 452, 460, 464
SfaNI	GCATC	1 cut(s)	425
SmlI	CTYRAG	1 cut(s)	423
SmoI	CTYRAG	1 cut(s)	423
SnaBI	TACGTA	1 cut(s)	135
Sse9I	AATT	2 cut(s)	150, 168
SsiI	CCGC	1 cut(s)	79
SspMI	CTAG	1 cut(s)	459
StyI	CCWWGG	1 cut(s)	400
TaiI	ACGT	1 cut(s)	137
TasI	AATT	2 cut(s)	150, 168
TfiI	GAWTC	2 cut(s)	200, 281
Tru1I	TTAA	2 cut(s)	39, 441
Tru9I	TTAA	2 cut(s)	39, 441
TseFI	GTSAC	1 cut(s)	225
TseI	GCWGC	2 cut(s)	368, 371
Tsp45I	GTSAC	1 cut(s)	225
TspDTI	ATGAA	2 cut(s)	162, 276
XceI	RCATGY	1 cut(s)	344
XcmI	CCANNNNNNNNNTGG	1 cut(s)	253
XmnI	GAANNNNTTC	1 cut(s)	395
XspI	CTAG	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.