Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002558

Physical Location & Seq

Genomic Coordinates Forward (+)

62279483 .. 62280441

Gene Structure 959 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004787

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGCCTACAAGGAAGCCTCTTCTTCCTCTAGTTCTCTCACTCGTCCAGGCATACATGATGTGTTTTTGAGTTTTAGAGGTACGGATACGCGCTCGGGTTTTACATATAATCTGTACAAGGCTTTAGATAGAGAGAAAATCAAGACTTTCTTTGATGATCATACACTCAAGAGAGGAGAAAACATATCAGCAGCACTTCTTCGTGCAATAGAAGTTTCAAAGATTTCTGTGGTTATATGCTCTGAAAACTACGCTTCCTCAAGTTGGTGCTTGGATGAACTTGTTAAGATCCTTGAATGTCAAAAATCAAAGCAGCAGATTGTTATCCCGGTTTTTTACAAAGTGGATCCTGCACATGTACGACATCAAACTGGTAGTTTTGGTCAAGCCCTTGCCGGGTTGAAATACAACAAGGACAAGGTCCCCAGATGGAGGGCAGCTCTTACACAAGTAGCAAATTTGTCTGGATGGACTTATGTGGACGGGTGTGAATCTGATTTTATCGAGAAGATTGTTAGAGAGATATTAGATGTGGTCGGCCTCAACGACCAAAAGACGAAAGAAGATGAAAGCAATAAAAGGGACTCAACTGGCCTCGAGGACCAAAAGAAGAATAAAGATGGGGCGGACCTGTACAATCAGGCCGTACTTGAGGTCCAAAATATTCTAAATGGGGCGGACCTCTACAATCAGTCCTTCCTCGACGTTCAGAAGAATGTAAATGGGGCGGACCTCTACAATCAGGCCTTGCTTCAGGTTCAGAAGAATATAAATGGAGAGGACCTCTACAATCAGGCCTTGCTTGAGGCCCAGAAGATCCATGATGGGGTGGGCAAACGATTGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

283

Amino Acids

31.66

Weight (kDa)

6.24

Isoelectric Point (pI)

38.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	19 - 190	5.9e-57	TIR domain
TIR_2	PF13676	21 - 117	5.8e-16	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20142
fragaria_vesca	FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730
malus_domestica	MD05G1140000.v1.1
prunus_persica	Prupe.1G120200_v2.0.a1
pyrus_communis	pycom03g08420 pycom04g02910 pycom10g12010 pycom10g12080 pycom10g12100
rosa_chinensis	RchiOBHm_Chr3g0451631 RchiOBHm_Chr5g0026391 RchiOBHm_Chr7g0241711
rosa_laevigata	RLG00000004786 RLG00000004787 RLG00000029480
rosa_multiflora	Rmu_co8097864.1_g000001 Rmu_sc0001689.1_g000015 Rmu_sc0002354.1_g000038 Rmu_sc0003469.1_g000013 Rmu_sc0006326.1_g000044 Rmu_sc0038436.1_g000001 Rmu_sc0043107.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053220 Rroxscaffold_3G00218740 Rroxscaffold_3G00267480 Rroxscaffold_4G00317010 Rroxscaffold_6G00397670 Rroxscaffold_6G00397680
rosa_rugosa	Rorug01G0112600 Rorug05G0000700 Rorug06G0259600 Rorug07G0346700
rosa_samantha	Rh7AG085700
rosa_wichuraiana	Rw1G011340 Rw7G007550 Rw7G042350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	596
AccII	CGCG	1 cut(s)	91
AciI	CCGC	3 cut(s)	626, 677, 728
AclWI	GGATC	4 cut(s)	283, 341, 354, 811
AcsI	RAATTY	1 cut(s)	457
AcuI	CTGAAG	1 cut(s)	737
AfaI	GTAC	5 cut(s)	82, 116, 360, 635, 648
AfiI	CCNNNNNNNGG	4 cut(s)	264, 396, 432, 826
AflIII	ACRYGT	1 cut(s)	355
AgsI	TTSAA	3 cut(s)	219, 296, 403
AjnI	CCWGG	1 cut(s)	46
AluBI	AGCT	1 cut(s)	440
AluI	AGCT	1 cut(s)	440
AlwI	GGATC	4 cut(s)	283, 341, 354, 811
Ama87I	CYCGRG	2 cut(s)	94, 596
AoxI	GGCC	7 cut(s)	3, 538, 592, 642, 744, 795, 807
ApeKI	GCWGC	3 cut(s)	191, 313, 437
ApoI	RAATTY	1 cut(s)	457
AspLEI	GCGC	1 cut(s)	93
AspS9I	GGNCC	8 cut(s)	421, 601, 628, 655, 679, 730, 781, 808
AsuC2I	CCSGG	2 cut(s)	329, 397
AvaI	CYCGRG	2 cut(s)	94, 596
AvaII	GGWCC	7 cut(s)	421, 601, 628, 655, 679, 730, 781
BamHI	GGATCC	1 cut(s)	346
BbvI	GCAGC	3 cut(s)	203, 325, 449
BccI	CCATC	4 cut(s)	423, 462, 614, 818
BceAI	ACGGC	1 cut(s)	629
BciT130I	CCWGG	1 cut(s)	48
BciVI	GTATCC	1 cut(s)	79
BclI	TGATCA	1 cut(s)	157
BcnI	CCSGG	2 cut(s)	329, 397
BfaI	CTAG	1 cut(s)	30
BfuI	GTATCC	1 cut(s)	79
BisI	GCNGC	3 cut(s)	192, 314, 438
BlsI	GCNGC	3 cut(s)	193, 315, 439
Bme1390I	CCNGG	3 cut(s)	48, 329, 397
Bme18I	GGWCC	7 cut(s)	421, 601, 628, 655, 679, 730, 781
BmeT110I	CYCGRG	2 cut(s)	94, 596
BmgT120I	GGNCC	8 cut(s)	421, 601, 628, 655, 679, 730, 781, 808
BmiI	GGNNCC	2 cut(s)	348, 423
BmrFI	CCNGG	3 cut(s)	48, 329, 397
BplI	GAGNNNNNCTC	4 cut(s)	424, 456, 768, 800
BpuEI	CTTGAG	4 cut(s)	152, 244, 671, 824
BpuMI	CCSGG	2 cut(s)	329, 397
BsaBI	GATNNNNATC	1 cut(s)	323
Bsc4I	CCNNNNNNNGG	4 cut(s)	264, 396, 432, 826
Bse1I	ACTGG	2 cut(s)	376, 595
Bse8I	GATNNNNATC	1 cut(s)	323
BseBI	CCWGG	1 cut(s)	48
BseGI	GGATG	2 cut(s)	280, 473
BseJI	GATNNNNATC	1 cut(s)	323
BseLI	CCNNNNNNNGG	4 cut(s)	264, 396, 432, 826
BseNI	ACTGG	2 cut(s)	376, 595
BseRI	GAGGAG	1 cut(s)	189
BseXI	GCAGC	3 cut(s)	203, 325, 449
BsgI	GTGCAG	1 cut(s)	336
Bsh1236I	CGCG	1 cut(s)	91
BshFI	GGCC	7 cut(s)	5, 540, 594, 644, 746, 797, 809
BsiHKCI	CYCGRG	2 cut(s)	94, 596
BsiSI	CCGG	2 cut(s)	329, 396
BslFI	GGGAC	2 cut(s)	407, 596
BslI	CCNNNNNNNGG	4 cut(s)	264, 396, 432, 826
BsmFI	GGGAC	2 cut(s)	407, 596
BsnI	GGCC	7 cut(s)	5, 540, 594, 644, 746, 797, 809
BsoBI	CYCGRG	2 cut(s)	94, 596
Bsp1407I	TGTACA	2 cut(s)	114, 633
Bsp143I	GATC	4 cut(s)	157, 288, 346, 816
BspACI	CCGC	3 cut(s)	626, 677, 728
BspANI	GGCC	7 cut(s)	5, 540, 594, 644, 746, 797, 809
BspFNI	CGCG	1 cut(s)	91
BspLI	GGNNCC	2 cut(s)	348, 423
BspPI	GGATC	4 cut(s)	283, 341, 354, 811
BsrGI	TGTACA	2 cut(s)	114, 633
BsrI	ACTGG	2 cut(s)	376, 595
BssMI	GATC	4 cut(s)	157, 288, 346, 816
Bst2UI	CCWGG	1 cut(s)	48
Bst6I	CTCTTC	1 cut(s)	25
BstAUI	TGTACA	2 cut(s)	114, 633
BstF5I	GGATG	2 cut(s)	280, 473
BstFNI	CGCG	1 cut(s)	91
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	4 cut(s)	160, 291, 349, 819
BstMBI	GATC	4 cut(s)	157, 288, 346, 816
BstNI	CCWGG	1 cut(s)	48
BstNSI	RCATGY	1 cut(s)	359
BstSCI	CCNGG	3 cut(s)	46, 327, 395
BstUI	CGCG	1 cut(s)	91
BstV1I	GCAGC	3 cut(s)	203, 325, 449
BstX2I	RGATCY	3 cut(s)	288, 346, 816
BstYI	RGATCY	3 cut(s)	288, 346, 816
BsuI	GTATCC	1 cut(s)	79
BsuRI	GGCC	7 cut(s)	5, 540, 594, 644, 746, 797, 809
BtsCI	GGATG	2 cut(s)	280, 473
CfoI	GCGC	1 cut(s)	93
Cfr13I	GGNCC	8 cut(s)	421, 601, 628, 655, 679, 730, 781, 808
Csp6I	GTAC	5 cut(s)	81, 115, 359, 634, 647
CviAII	CATG	3 cut(s)	56, 356, 821
CviQI	GTAC	5 cut(s)	81, 115, 359, 634, 647
DpnI	GATC	4 cut(s)	159, 290, 348, 818
DpnII	GATC	4 cut(s)	157, 288, 346, 816
Eam1104I	CTCTTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	25
EciI	GGCGGA	3 cut(s)	641, 692, 743
Eco147I	AGGCCT	2 cut(s)	746, 797
Eco47I	GGWCC	7 cut(s)	421, 601, 628, 655, 679, 730, 781
Eco57I	CTGAAG	1 cut(s)	737
Eco88I	CYCGRG	2 cut(s)	94, 596
EcoO109I	RGGNCCY	2 cut(s)	421, 781
EcoRII	CCWGG	1 cut(s)	46
FaeI	CATG	3 cut(s)	59, 359, 824
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FaqI	GGGAC	2 cut(s)	407, 596
FatI	CATG	3 cut(s)	55, 355, 820
FbaI	TGATCA	1 cut(s)	157
Fnu4HI	GCNGC	3 cut(s)	192, 314, 438
FokI	GGATG	2 cut(s)	287, 480
Fsp4HI	GCNGC	3 cut(s)	192, 314, 438
FspBI	CTAG	1 cut(s)	30
GlaI	GCGC	1 cut(s)	92
GluI	GCNGC	3 cut(s)	192, 314, 438
HaeIII	GGCC	7 cut(s)	5, 540, 594, 644, 746, 797, 809
HapII	CCGG	2 cut(s)	329, 396
HhaI	GCGC	1 cut(s)	93
Hin1II	CATG	3 cut(s)	59, 359, 824
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HinfI	GANTC	2 cut(s)	491, 584
HpaII	CCGG	2 cut(s)	329, 396
Hpy166II	GTNNAC	1 cut(s)	481
Hpy188I	TCNGA	4 cut(s)	244, 496, 711, 762
Hpy188III	TCNNGA	4 cut(s)	142, 169, 465, 505
Hpy8I	GTNNAC	1 cut(s)	481
Hpy99I	CGWCG	1 cut(s)	707
HpyAV	CCTTC	1 cut(s)	706
HpyCH4IV	ACGT	1 cut(s)	705
HpyCH4V	TGCA	2 cut(s)	206, 353
HpySE526I	ACGT	1 cut(s)	705
Hsp92II	CATG	3 cut(s)	59, 359, 824
HspAI	GCGC	1 cut(s)	91
Ksp22I	TGATCA	1 cut(s)	157
Kzo9I	GATC	4 cut(s)	157, 288, 346, 816
Lsp1109I	GCAGC	3 cut(s)	203, 325, 449
MaeI	CTAG	1 cut(s)	30
MaeII	ACGT	1 cut(s)	705
MalI	GATC	4 cut(s)	159, 290, 348, 818
MboI	GATC	4 cut(s)	157, 288, 346, 816
MboII	GAAGA	9 cut(s)	12, 15, 191, 520, 575, 622, 724, 775, 826
MflI	RGATCY	3 cut(s)	288, 346, 816
MluCI	AATT	1 cut(s)	457
MlyI	GAGTC	1 cut(s)	578
MseI	TTAA	1 cut(s)	285
MspI	CCGG	2 cut(s)	329, 396
MspR9I	CCNGG	3 cut(s)	48, 329, 397
MvaI	CCWGG	1 cut(s)	48
MvnI	CGCG	1 cut(s)	91
NciI	CCSGG	2 cut(s)	329, 397
NdeII	GATC	4 cut(s)	157, 288, 346, 816
NlaIII	CATG	3 cut(s)	59, 359, 824
NlaIV	GGNNCC	2 cut(s)	348, 423
NspI	RCATGY	1 cut(s)	359
PaeR7I	CTCGAG	1 cut(s)	596
PceI	AGGCCT	2 cut(s)	746, 797
PciI	ACATGT	1 cut(s)	355
PcsI	WCGNNNNNNNCGW	1 cut(s)	543
PfeI	GAWTC	1 cut(s)	491
PflFI	GACNNNGTC	1 cut(s)	419
PkrI	GCNGC	3 cut(s)	193, 315, 439
PleI	GAGTC	1 cut(s)	578
PpsI	GAGTC	1 cut(s)	578
PpuMI	RGGWCCY	2 cut(s)	421, 781
PscI	ACATGT	1 cut(s)	355
Psp5II	RGGWCCY	2 cut(s)	421, 781
Psp6I	CCWGG	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	46
PspN4I	GGNNCC	2 cut(s)	348, 423
PspPI	GGNCC	8 cut(s)	421, 601, 628, 655, 679, 730, 781, 808
PspPPI	RGGWCCY	2 cut(s)	421, 781
PspXI	VCTCGAGB	1 cut(s)	596
PsuI	RGATCY	3 cut(s)	288, 346, 816
PsyI	GACNNNGTC	1 cut(s)	419
RsaI	GTAC	5 cut(s)	82, 116, 360, 635, 648
RsaNI	GTAC	5 cut(s)	81, 115, 359, 634, 647
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	3 cut(s)	192, 314, 438
Sau3AI	GATC	4 cut(s)	157, 288, 346, 816
Sau96I	GGNCC	8 cut(s)	421, 601, 628, 655, 679, 730, 781, 808
SchI	GAGTC	1 cut(s)	578
ScrFI	CCNGG	3 cut(s)	48, 329, 397
Sfr274I	CTCGAG	1 cut(s)	596
SinI	GGWCC	7 cut(s)	421, 601, 628, 655, 679, 730, 781
SlaI	CTCGAG	1 cut(s)	596
SmlI	CTYRAG	5 cut(s)	167, 259, 596, 650, 803
SmoI	CTYRAG	5 cut(s)	167, 259, 596, 650, 803
Sse9I	AATT	1 cut(s)	457
SseBI	AGGCCT	2 cut(s)	746, 797
SsiI	CCGC	3 cut(s)	626, 677, 728
SspI	AATATT	1 cut(s)	664
SspMI	CTAG	1 cut(s)	30
StuI	AGGCCT	2 cut(s)	746, 797
StyD4I	CCNGG	3 cut(s)	46, 327, 395
TaiI	ACGT	1 cut(s)	708
TaqI	TCGA	3 cut(s)	504, 597, 702
TasI	AATT	1 cut(s)	457
TatI	WGTACW	2 cut(s)	114, 633
TfiI	GAWTC	1 cut(s)	491
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TseI	GCWGC	3 cut(s)	191, 313, 437
TspDTI	ATGAA	2 cut(s)	291, 582
TspGWI	ACGGA	1 cut(s)	98
Tth111I	GACNNNGTC	1 cut(s)	419
VpaK11BI	GGWCC	7 cut(s)	421, 601, 628, 655, 679, 730, 781
XapI	RAATTY	1 cut(s)	457
XceI	RCATGY	1 cut(s)	359
XhoI	CTCGAG	1 cut(s)	596
XspI	CTAG	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.