Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002558

Physical Location & Seq

Genomic Coordinates Forward (+)

74059500 .. 74060012

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00053220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGCTGCTGCTTCTTCTTGCTCTTATATCACCCCTCAGGAGAAGCATGATGTTTTTCTTAGTTTCAGAGGCGAGGACACCCGGTATACTTTCACCAGCCATCTTTATGAGGCTTTATGTAAGAAGAAAATCCGAACTTACATAGATAACAAACTACAGAGAGGAGATGAAATCGCACCTGCCCTTCTCGAAGCAATCAGTGAATCGAAGCTTTCGGTTATCATTTTCTCCAAAAACTATGCTTCTTCTACATGGTGCTTAGATAAAGCGCACATACTCGAATCCAGAGATAAACAGTTTGTTATACCCATCTTCTACGGCGTAGATCCATCAGATGTACGCAAACAATCGGGGAGTTATGCAGATGCATTTGTTGAACATGAGAAACGTTTCGAGGACATGAGGGACAAGGTGCTCAGGTGGAGAAATTCTTTGACAACAGCAGCCAGTATGTCTGGGCTTCATTCCCAAACAGATAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

160

Amino Acids

18.36

Weight (kDa)

7.73

Isoelectric Point (pI)

48.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	15 - 157	5.7e-46	TIR domain
TIR_2	PF13676	18 - 126	4.1e-14	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20142
fragaria_vesca	FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730
malus_domestica	MD05G1140000.v1.1
prunus_persica	Prupe.1G120200_v2.0.a1
pyrus_communis	pycom03g08420 pycom04g02910 pycom10g12010 pycom10g12080 pycom10g12100
rosa_chinensis	RchiOBHm_Chr3g0451631 RchiOBHm_Chr5g0026391 RchiOBHm_Chr7g0241711
rosa_laevigata	RLG00000004786 RLG00000004787 RLG00000029480
rosa_multiflora	Rmu_co8097864.1_g000001 Rmu_sc0001689.1_g000015 Rmu_sc0002354.1_g000038 Rmu_sc0003469.1_g000013 Rmu_sc0006326.1_g000044 Rmu_sc0038436.1_g000001 Rmu_sc0043107.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053220 Rroxscaffold_3G00218740 Rroxscaffold_3G00267480 Rroxscaffold_4G00317010 Rroxscaffold_6G00397670 Rroxscaffold_6G00397680
rosa_rugosa	Rorug01G0112600 Rorug05G0000700 Rorug06G0259600 Rorug07G0346700
rosa_samantha	Rh7AG085700
rosa_wichuraiana	Rw1G011340 Rw7G007550 Rw7G042350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	187
Acc36I	ACCTGC	1 cut(s)	187
AccI	GTMKAC	1 cut(s)	86
AclI	AACGTT	1 cut(s)	388
AclWI	GGATC	1 cut(s)	320
AcsI	RAATTY	1 cut(s)	427
AfaI	GTAC	1 cut(s)	339
AgsI	TTSAA	1 cut(s)	377
AluBI	AGCT	1 cut(s)	211
AluI	AGCT	1 cut(s)	211
Alw21I	GWGCWC	1 cut(s)	417
AlwI	GGATC	1 cut(s)	320
ApeKI	GCWGC	3 cut(s)	5, 8, 443
ApoI	RAATTY	1 cut(s)	427
Asp700I	GAANNNNTTC	1 cut(s)	389
AspLEI	GCGC	1 cut(s)	271
AsuC2I	CCSGG	1 cut(s)	82
AsuHPI	GGTGA	2 cut(s)	22, 85
AxyI	CCTNAGG	1 cut(s)	36
Bbv12I	GWGCWC	1 cut(s)	417
BbvI	GCAGC	1 cut(s)	455
BccI	CCATC	3 cut(s)	108, 317, 337
BceAI	ACGGC	1 cut(s)	334
BcnI	CCSGG	1 cut(s)	82
BfmI	CTRYAG	1 cut(s)	155
BfuAI	ACCTGC	1 cut(s)	187
BisI	GCNGC	3 cut(s)	6, 9, 444
BlsI	GCNGC	3 cut(s)	7, 10, 445
Bme1390I	CCNGG	1 cut(s)	82
BmrFI	CCNGG	1 cut(s)	82
BmsI	GCATC	1 cut(s)	355
Bpu10I	CCTNAGC	1 cut(s)	416
BpuMI	CCSGG	1 cut(s)	82
Bse1I	ACTGG	1 cut(s)	447
Bse21I	CCTNAGG	1 cut(s)	36
BseMII	CTCAG	2 cut(s)	50, 430
BseNI	ACTGG	1 cut(s)	447
BseRI	GAGGAG	1 cut(s)	177
BseXI	GCAGC	1 cut(s)	455
BsiHKAI	GWGCWC	1 cut(s)	417
BsiSI	CCGG	1 cut(s)	82
BslFI	GGGAC	1 cut(s)	419
BsmFI	GGGAC	1 cut(s)	419
Bsp1286I	GDGCHC	1 cut(s)	417
Bsp143I	GATC	1 cut(s)	325
BspCNI	CTCAG	2 cut(s)	49, 429
BspMI	ACCTGC	1 cut(s)	187
BspPI	GGATC	1 cut(s)	320
BsrI	ACTGG	1 cut(s)	447
BssMI	GATC	1 cut(s)	325
BssNAI	GTATAC	1 cut(s)	87
Bst1107I	GTATAC	1 cut(s)	87
Bst4CI	ACNGT	1 cut(s)	297
BstDEI	CTNAG	4 cut(s)	36, 59, 259, 416
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	1 cut(s)	328
BstMBI	GATC	1 cut(s)	325
BstSCI	CCNGG	1 cut(s)	80
BstSFI	CTRYAG	1 cut(s)	155
BstV1I	GCAGC	1 cut(s)	455
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BstZ17I	GTATAC	1 cut(s)	87
Bsu36I	CCTNAGG	1 cut(s)	36
BtsIMutI	CAGTG	1 cut(s)	205
BveI	ACCTGC	1 cut(s)	187
CfoI	GCGC	1 cut(s)	271
Csp6I	GTAC	1 cut(s)	338
CviAII	CATG	4 cut(s)	47, 252, 380, 400
CviJI	RGCY	6 cut(s)	5, 99, 113, 211, 446, 460
CviKI_1	RGCY	6 cut(s)	5, 99, 113, 211, 446, 460
CviQI	GTAC	1 cut(s)	338
DdeI	CTNAG	4 cut(s)	36, 59, 259, 416
DpnI	GATC	1 cut(s)	327
DpnII	GATC	1 cut(s)	325
Eco81I	CCTNAGG	1 cut(s)	36
EcoT22I	ATGCAT	1 cut(s)	370
FaeI	CATG	4 cut(s)	50, 255, 383, 403
FaqI	GGGAC	1 cut(s)	419
FatI	CATG	4 cut(s)	46, 251, 379, 399
FblI	GTMKAC	1 cut(s)	86
Fnu4HI	GCNGC	3 cut(s)	6, 9, 444
Fsp4HI	GCNGC	3 cut(s)	6, 9, 444
GlaI	GCGC	1 cut(s)	270
GluI	GCNGC	3 cut(s)	6, 9, 444
HapII	CCGG	1 cut(s)	82
HhaI	GCGC	1 cut(s)	271
Hin1II	CATG	4 cut(s)	50, 255, 383, 403
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	2 cut(s)	203, 281
HpaII	CCGG	1 cut(s)	82
HphI	GGTGA	2 cut(s)	22, 85
Hpy166II	GTNNAC	1 cut(s)	87
Hpy188I	TCNGA	3 cut(s)	68, 134, 334
Hpy188III	TCNNGA	3 cut(s)	38, 188, 285
Hpy8I	GTNNAC	1 cut(s)	87
HpyAV	CCTTC	1 cut(s)	194
HpyCH4III	ACNGT	1 cut(s)	297
HpyCH4IV	ACGT	1 cut(s)	388
HpyCH4V	TGCA	2 cut(s)	362, 368
HpyF3I	CTNAG	4 cut(s)	36, 59, 259, 416
HpySE526I	ACGT	1 cut(s)	388
Hsp92II	CATG	4 cut(s)	50, 255, 383, 403
HspAI	GCGC	1 cut(s)	269
Kzo9I	GATC	1 cut(s)	325
LpnPI	CCDG	8 cut(s)	23, 95, 109, 192, 298, 403, 441, 460
Lsp1109I	GCAGC	1 cut(s)	455
LweI	GCATC	1 cut(s)	355
MaeII	ACGT	1 cut(s)	388
MalI	GATC	1 cut(s)	327
MboI	GATC	1 cut(s)	325
MboII	GAAGA	4 cut(s)	6, 136, 237, 304
MflI	RGATCY	1 cut(s)	325
MhlI	GDGCHC	1 cut(s)	417
MluCI	AATT	1 cut(s)	427
MnlI	CCTC	7 cut(s)	45, 62, 67, 103, 155, 388, 396
Mph1103I	ATGCAT	1 cut(s)	370
MroXI	GAANNNNTTC	1 cut(s)	389
MslI	CAYNNNNRTG	1 cut(s)	105
MspI	CCGG	1 cut(s)	82
MspR9I	CCNGG	1 cut(s)	82
NciI	CCSGG	1 cut(s)	82
NdeII	GATC	1 cut(s)	325
NlaIII	CATG	4 cut(s)	50, 255, 383, 403
NsiI	ATGCAT	1 cut(s)	370
PaqCI	CACCTGC	1 cut(s)	187
PdmI	GAANNNNTTC	1 cut(s)	389
PfeI	GAWTC	2 cut(s)	203, 281
PkrI	GCNGC	3 cut(s)	7, 10, 445
Psp1406I	AACGTT	1 cut(s)	388
PsuI	RGATCY	1 cut(s)	325
RsaI	GTAC	1 cut(s)	339
RsaNI	GTAC	1 cut(s)	338
RseI	CAYNNNNRTG	1 cut(s)	105
SatI	GCNGC	3 cut(s)	6, 9, 444
Sau3AI	GATC	1 cut(s)	325
ScrFI	CCNGG	1 cut(s)	82
SduI	GDGCHC	1 cut(s)	417
SetI	ASST	6 cut(s)	181, 213, 391, 414, 422, 482
SfaNI	GCATC	1 cut(s)	355
SfcI	CTRYAG	1 cut(s)	155
SmiMI	CAYNNNNRTG	1 cut(s)	105
Sse9I	AATT	1 cut(s)	427
StyD4I	CCNGG	1 cut(s)	80
TaaI	ACNGT	1 cut(s)	297
TaiI	ACGT	1 cut(s)	391
TaqI	TCGA	4 cut(s)	189, 206, 279, 393
TasI	AATT	1 cut(s)	427
TfiI	GAWTC	2 cut(s)	203, 281
TscAI	CASTG	1 cut(s)	205
TseI	GCWGC	3 cut(s)	5, 8, 443
TspDTI	ATGAA	2 cut(s)	183, 452
TspRI	CASTG	1 cut(s)	205
XapI	RAATTY	1 cut(s)	427
XmiI	GTMKAC	1 cut(s)	86
XmnI	GAANNNNTTC	1 cut(s)	389
Zsp2I	ATGCAT	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.