RLG00000029480

RESISTANCE protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0002558
Physical Location & Seq
Forward (+)
39324981 .. 39326308
1328 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029480

Sequence Viewer

Length: 705 bp
ATGGCTTCTCTTTCTTGTTCTTCTGCACCTGGCAGCTTTAAGTATGATGTCTTTCTTAATTTTAGAGGGGAGGACACCCGCAATACTTTTACCAGGCATCTTCATGAGGCTTTAGTCAGGAAACAAATCAAAACCTTCATAGATGACGAAATTGTGCGTGGAGAGGAAATTGAACCAACCCTTCGCCAAGCAATACAGGAATCGAAACTTTGCGTAGTCATTTTGTCACAAGGCTATGCTTCTTCCACATCGTGCTTGGATGAACTTGCACATATATTGGAATGCAAGAAAAGATGCCAACAATCGGTTTTACCCATTTTTTATCGGGTAGATCCATCACAAGTAAGAGATCAGAGGGAGAGTTATGCAGATGCATTTGTTCAGCATGAAGTACATTTCAAGGACACGCCAGACAAGGTGCGCAAGTGGAGGGATGCTTTAACCAAAGCTTCCAAAATAGCTGGGTTTGTTTCACGCAACATTGGCCCCGATTACAAATTAGTTGAGGAAGTTGTGAGAGAGATTGTGTGGAAGTTGAAACGCAAATGCATTGCCCCACAAGATGTTGGAGAAGATGACTGCTTCAAATGTGGTGGCATAGGACATTGGGCCAAACACTGCCCTTCAGCAGGTGAATGTTTCAAGTGTGATGGGATAGGACATTGGGCCCTTCAGCTGGTGAATGTTTCAAGTGTGGTGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

235

Amino Acids

26.52

Weight (kDa)

7.54

Isoelectric Point (pI)

47.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 14 - 181 9.2e-52 TIR domain
TIR_2 PF13676 17 - 126 1.6e-15 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 620
Acc16I TGCGCA 1 cut(s) 422
Acc36I ACCTGC 1 cut(s) 620
AciI CCGC 1 cut(s) 79
AclWI GGATC 1 cut(s) 326
AcuI CTGAAG 2 cut(s) 609, 656
AdeI CACNNNGTG 1 cut(s) 252
AfaI GTAC 1 cut(s) 393
AfiI CCNNNNNNNGG 3 cut(s) 304, 629, 676
AgsI TTSAA 6 cut(s) 173, 400, 538, 586, 643, 690
AjnI CCWGG 2 cut(s) 28, 92
AluBI AGCT 4 cut(s) 36, 449, 461, 676
AluI AGCT 4 cut(s) 36, 449, 461, 676
AlwI GGATC 1 cut(s) 326
AoxI GGCC 3 cut(s) 484, 609, 666
ApaI GGGCCC 1 cut(s) 670
ApeKI GCWGC 1 cut(s) 33
AspLEI GCGC 1 cut(s) 423
AspS9I GGNCC 4 cut(s) 485, 609, 666, 667
AsuHPI GGTGA 2 cut(s) 644, 691
BaeGI GKGCMC 1 cut(s) 670
BanII GRGCYC 1 cut(s) 670
BbvI GCAGC 1 cut(s) 45
BccI CCATC 2 cut(s) 343, 644
BciT130I CCWGG 2 cut(s) 30, 94
BfuAI ACCTGC 1 cut(s) 620
BisI GCNGC 1 cut(s) 34
BlsI GCNGC 1 cut(s) 35
Bme1390I CCNGG 2 cut(s) 30, 94
BmgT120I GGNCC 4 cut(s) 485, 609, 666, 667
BmiI GGNNCC 2 cut(s) 487, 668
BmrFI CCNGG 2 cut(s) 30, 94
BmsI GCATC 4 cut(s) 106, 284, 361, 424
Bsc4I CCNNNNNNNGG 3 cut(s) 304, 629, 676
Bse3DI GCAATG 1 cut(s) 549
BseBI CCWGG 2 cut(s) 30, 94
BseGI GGATG 2 cut(s) 265, 439
BseLI CCNNNNNNNGG 3 cut(s) 304, 629, 676
BseMI GCAATG 1 cut(s) 549
BseSI GKGCMC 1 cut(s) 670
BseXI GCAGC 1 cut(s) 45
BseYI CCCAGC 1 cut(s) 461
BsgI GTGCAG 1 cut(s) 9
BshFI GGCC 3 cut(s) 486, 611, 668
BslI CCNNNNNNNGG 3 cut(s) 304, 629, 676
BsmI GAATGC 1 cut(s) 287
BsnI GGCC 3 cut(s) 486, 611, 668
Bsp120I GGGCCC 1 cut(s) 666
Bsp1286I GDGCHC 1 cut(s) 670
Bsp143I GATC 2 cut(s) 331, 349
BspACI CCGC 1 cut(s) 79
BspANI GGCC 3 cut(s) 486, 611, 668
BspHI TCATGA 1 cut(s) 103
BspLI GGNNCC 2 cut(s) 487, 668
BspMI ACCTGC 1 cut(s) 620
BspPI GGATC 1 cut(s) 326
BsrDI GCAATG 1 cut(s) 549
BssMI GATC 2 cut(s) 331, 349
Bst2UI CCWGG 2 cut(s) 30, 94
BstENI CCTNNNNNAGG 1 cut(s) 627
BstF5I GGATG 2 cut(s) 265, 439
BstHHI GCGC 1 cut(s) 423
BstKTI GATC 2 cut(s) 334, 352
BstMBI GATC 2 cut(s) 331, 349
BstMWI GCNNNNNNNGC 1 cut(s) 483
BstNI CCWGG 2 cut(s) 30, 94
BstSCI CCNGG 2 cut(s) 28, 92
BstSLI GKGCMC 1 cut(s) 670
BstV1I GCAGC 1 cut(s) 45
BstX2I RGATCY 1 cut(s) 331
BstYI RGATCY 1 cut(s) 331
BsuRI GGCC 3 cut(s) 486, 611, 668
BtsCI GGATG 2 cut(s) 265, 439
BtsI GCAGTG 1 cut(s) 616
BtsIMutI CAGTG 1 cut(s) 616
BveI ACCTGC 1 cut(s) 620
CciI TCATGA 1 cut(s) 103
CfoI GCGC 1 cut(s) 423
Cfr13I GGNCC 4 cut(s) 485, 609, 666, 667
Csp6I GTAC 1 cut(s) 392
CspCI CAANNNNNGTGG 3 cut(s) 574, 609, 678
CviAII CATG 2 cut(s) 104, 386
CviQI GTAC 1 cut(s) 392
DpnI GATC 2 cut(s) 333, 351
DpnII GATC 2 cut(s) 331, 349
DraIII CACNNNGTG 1 cut(s) 252
Eco24I GRGCYC 1 cut(s) 670
Eco57I CTGAAG 2 cut(s) 609, 656
EcoNI CCTNNNNNAGG 1 cut(s) 627
EcoO109I RGGNCCY 1 cut(s) 667
EcoRII CCWGG 2 cut(s) 28, 92
EcoT22I ATGCAT 2 cut(s) 376, 551
EcoT38I GRGCYC 1 cut(s) 670
FaeI CATG 2 cut(s) 107, 389
FaiI YATR 9 cut(s) 45, 105, 140, 237, 273, 275, 366, 387, 599
FatI CATG 2 cut(s) 103, 385
FauI CCCGC 1 cut(s) 86
Fnu4HI GCNGC 1 cut(s) 34
FokI GGATG 2 cut(s) 272, 446
FriOI GRGCYC 1 cut(s) 670
Fsp4HI GCNGC 1 cut(s) 34
FspI TGCGCA 1 cut(s) 422
GlaI GCGC 1 cut(s) 422
GluI GCNGC 1 cut(s) 34
GsaI CCCAGC 1 cut(s) 465
HaeIII GGCC 3 cut(s) 486, 611, 668
HhaI GCGC 1 cut(s) 423
Hin1II CATG 2 cut(s) 107, 389
Hin6I GCGC 1 cut(s) 421
HinP1I GCGC 1 cut(s) 421
HindIII AAGCTT 1 cut(s) 447
HinfI GANTC 1 cut(s) 200
HphI GGTGA 2 cut(s) 644, 691
Hpy188I TCNGA 1 cut(s) 354
Hpy188III TCNNGA 2 cut(s) 104, 118
HpyAV CCTTC 4 cut(s) 145, 191, 633, 680
HpyCH4V TGCA 6 cut(s) 26, 269, 285, 368, 374, 549
HpyF10VI GCNNNNNNNGC 1 cut(s) 483
Hsp92II CATG 2 cut(s) 107, 389
HspAI GCGC 1 cut(s) 421
Kzo9I GATC 2 cut(s) 331, 349
Lsp1109I GCAGC 1 cut(s) 45
LweI GCATC 4 cut(s) 106, 284, 361, 424
MaeIII GTNAC 1 cut(s) 225
MalI GATC 2 cut(s) 333, 351
MboI GATC 2 cut(s) 331, 349
MboII GAAGA 4 cut(s) 12, 92, 234, 584
MflI RGATCY 1 cut(s) 331
MhlI GDGCHC 1 cut(s) 670
MluCI AATT 4 cut(s) 58, 150, 168, 497
MmeI TCCRAC 1 cut(s) 547
MnlI CCTC 7 cut(s) 59, 64, 100, 157, 348, 423, 499
Mph1103I ATGCAT 2 cut(s) 376, 551
MseI TTAA 3 cut(s) 39, 57, 440
MslI CAYNNNNRTG 1 cut(s) 102
MspA1I CMGCKG 1 cut(s) 676
MspR9I CCNGG 2 cut(s) 30, 94
Mva1269I GAATGC 1 cut(s) 287
MvaI CCWGG 2 cut(s) 30, 94
MwoI GCNNNNNNNGC 1 cut(s) 483
NdeII GATC 2 cut(s) 331, 349
NlaIII CATG 2 cut(s) 107, 389
NlaIV GGNNCC 2 cut(s) 487, 668
NmuCI GTSAC 1 cut(s) 225
NsbI TGCGCA 1 cut(s) 422
NsiI ATGCAT 2 cut(s) 376, 551
PagI TCATGA 1 cut(s) 103
PaqCI CACCTGC 1 cut(s) 620
PctI GAATGC 1 cut(s) 287
PfeI GAWTC 1 cut(s) 200
PkrI GCNGC 1 cut(s) 35
Psp6I CCWGG 2 cut(s) 28, 92
PspFI CCCAGC 1 cut(s) 461
PspGI CCWGG 2 cut(s) 28, 92
PspN4I GGNNCC 2 cut(s) 487, 668
PspOMI GGGCCC 1 cut(s) 666
PspPI GGNCC 4 cut(s) 485, 609, 666, 667
PsuI RGATCY 1 cut(s) 331
PvuII CAGCTG 1 cut(s) 676
RsaI GTAC 1 cut(s) 393
RsaNI GTAC 1 cut(s) 392
RseI CAYNNNNRTG 1 cut(s) 102
SaqAI TTAA 3 cut(s) 39, 57, 440
SatI GCNGC 1 cut(s) 34
Sau3AI GATC 2 cut(s) 331, 349
Sau96I GGNCC 4 cut(s) 485, 609, 666, 667
ScrFI CCNGG 2 cut(s) 30, 94
SduI GDGCHC 1 cut(s) 670
SetI ASST 8 cut(s) 31, 38, 137, 420, 451, 463, 634, 678
SfaNI GCATC 4 cut(s) 106, 284, 361, 424
SmiMI CAYNNNNRTG 1 cut(s) 102
Sse9I AATT 4 cut(s) 58, 150, 168, 497
SsiI CCGC 1 cut(s) 79
StyD4I CCNGG 2 cut(s) 28, 92
TaqI TCGA 1 cut(s) 203
TasI AATT 4 cut(s) 58, 150, 168, 497
TatI WGTACW 1 cut(s) 391
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 3 cut(s) 39, 57, 440
Tru9I TTAA 3 cut(s) 39, 57, 440
TscAI CASTG 1 cut(s) 623
TseFI GTSAC 1 cut(s) 225
TseI GCWGC 1 cut(s) 33
Tsp45I GTSAC 1 cut(s) 225
TspDTI ATGAA 4 cut(s) 92, 127, 276, 402
TspRI CASTG 1 cut(s) 623
XagI CCTNNNNNAGG 1 cut(s) 627
XcmI CCANNNNNNNNNTGG 1 cut(s) 253
Zsp2I ATGCAT 2 cut(s) 376, 551
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.