Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002558

Physical Location & Seq

Genomic Coordinates Forward (+)

9455408 .. 9457082

Gene Structure 1675 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G120200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGACTCCATTGAGTTCTTTCAAGTTTTCATCATAATTATCATAATCATCATACTCATCATGACTCTGTTCTGCATGTACTTCAGATCATTAACATCTTCTTCTTCTTCCACTTCTTCTGTTGCTGCTGTTGATACTGATATCCCCCCTCTTCAAGAAAAGTATGATGTGTTTATCAGCTTCAGAGGTGATGAAACACGCGATTCTTTTACCAGCCATCTTCACAAGGCTTTACTTCGGAAGAACATTGATACCTACATGGATGACAGACTTGAGAAAGGAGACGACATTGAACCTGCCCTTCTAGAAGCAATCGAGAGATCGAAAATTGCACTAGTCATTTTCTCAAAAGACTATGCTTCTTCCACTTGGTGTTTGAAAGAACTTGTGCATATACTTGGATGCAAGAAAAACCATGGACAGATTGTTATACCCATTTTTTATCGCATAGATCCGTCACATGTACGAAAACAAAAGGGAACTTATGCACTTGAAGGTCGTGAACTTAAGAAACGATTGAAGGGCAGTAGGCATGTGGTGGCCAACTGGAGGGCTGCTTTGAAGGAAGCAGCCAATATTCTGGGTTTTATGATTCAAGAAAAACAGGGAGGACAGAGGCCGATTTTATTGAGGAAGTTGTTCAAGATGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

218

Amino Acids

24.96

Weight (kDa)

9.3

Isoelectric Point (pI)

54.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20142
fragaria_vesca	FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730
malus_domestica	MD05G1140000.v1.1
prunus_persica	Prupe.1G120200_v2.0.a1
pyrus_communis	pycom03g08420 pycom04g02910 pycom10g12010 pycom10g12080 pycom10g12100
rosa_chinensis	RchiOBHm_Chr3g0451631 RchiOBHm_Chr5g0026391 RchiOBHm_Chr7g0241711
rosa_laevigata	RLG00000004786 RLG00000004787 RLG00000029480
rosa_multiflora	Rmu_co8097864.1_g000001 Rmu_sc0001689.1_g000015 Rmu_sc0002354.1_g000038 Rmu_sc0003469.1_g000013 Rmu_sc0006326.1_g000044 Rmu_sc0038436.1_g000001 Rmu_sc0043107.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053220 Rroxscaffold_3G00218740 Rroxscaffold_3G00267480 Rroxscaffold_4G00317010 Rroxscaffold_6G00397670 Rroxscaffold_6G00397680
rosa_rugosa	Rorug01G0112600 Rorug05G0000700 Rorug06G0259600 Rorug07G0346700
rosa_samantha	Rh7AG085700
rosa_wichuraiana	Rw1G011340 Rw7G007550 Rw7G042350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	304
AccII	CGCG	1 cut(s)	201
AclWI	GGATC	1 cut(s)	446
AcoI	YGGCCR	1 cut(s)	540
AcuI	CTGAAG	2 cut(s)	67, 166
AdeI	CACNNNGTG	1 cut(s)	372
AfaI	GTAC	2 cut(s)	80, 465
AfiI	CCNNNNNNNGG	1 cut(s)	549
AflII	CTTAAG	1 cut(s)	506
AflIII	ACRYGT	1 cut(s)	460
AgsI	TTSAA	9 cut(s)	23, 155, 293, 379, 494, 520, 562, 596, 643
AhlI	ACTAGT	1 cut(s)	334
AluBI	AGCT	1 cut(s)	180
AluI	AGCT	1 cut(s)	180
Alw26I	GTCTC	1 cut(s)	276
AlwI	GGATC	1 cut(s)	446
AoxI	GGCC	2 cut(s)	540, 617
ApeKI	GCWGC	3 cut(s)	125, 554, 569
Asp700I	GAANNNNTTC	1 cut(s)	638
AsuHPI	GGTGA	1 cut(s)	200
BalI	TGGCCA	1 cut(s)	542
BbvI	GCAGC	3 cut(s)	112, 541, 581
BccI	CCATC	1 cut(s)	225
BcoDI	GTCTC	1 cut(s)	276
BcuI	ACTAGT	1 cut(s)	334
BfaI	CTAG	2 cut(s)	305, 335
BfrI	CTTAAG	1 cut(s)	506
BfuAI	ACCTGC	1 cut(s)	304
BisI	GCNGC	3 cut(s)	126, 555, 570
BlsI	GCNGC	3 cut(s)	127, 556, 571
BmsI	GCATC	1 cut(s)	392
BpmI	CTGGAG	1 cut(s)	568
BpuEI	CTTGAG	1 cut(s)	293
BsaJI	CCNNGG	1 cut(s)	415
Bsc4I	CCNNNNNNNGG	1 cut(s)	549
Bse1I	ACTGG	1 cut(s)	551
BseDI	CCNNGG	1 cut(s)	415
BseGI	GGATG	2 cut(s)	268, 407
BseLI	CCNNNNNNNGG	1 cut(s)	549
BseNI	ACTGG	1 cut(s)	551
BseXI	GCAGC	3 cut(s)	112, 541, 581
Bsh1236I	CGCG	1 cut(s)	201
BshFI	GGCC	2 cut(s)	542, 619
BslI	CCNNNNNNNGG	1 cut(s)	549
BsmAI	GTCTC	1 cut(s)	276
BsmBI	CGTCTC	1 cut(s)	276
BsnI	GGCC	2 cut(s)	542, 619
Bsp143I	GATC	3 cut(s)	86, 320, 451
Bsp19I	CCATGG	1 cut(s)	415
BspANI	GGCC	2 cut(s)	542, 619
BspFNI	CGCG	1 cut(s)	201
BspHI	TCATGA	1 cut(s)	60
BspMI	ACCTGC	1 cut(s)	304
BspPI	GGATC	1 cut(s)	446
BspTI	CTTAAG	1 cut(s)	506
BsrI	ACTGG	1 cut(s)	551
BssECI	CCNNGG	1 cut(s)	415
BssMI	GATC	3 cut(s)	86, 320, 451
BssT1I	CCWWGG	1 cut(s)	415
Bst6I	CTCTTC	1 cut(s)	156
BstAFI	CTTAAG	1 cut(s)	506
BstDSI	CCRYGG	1 cut(s)	415
BstF5I	GGATG	2 cut(s)	268, 407
BstFNI	CGCG	1 cut(s)	201
BstKTI	GATC	3 cut(s)	89, 323, 454
BstMAI	GTCTC	1 cut(s)	276
BstMBI	GATC	3 cut(s)	86, 320, 451
BstNSI	RCATGY	3 cut(s)	79, 464, 536
BstUI	CGCG	1 cut(s)	201
BstV1I	GCAGC	3 cut(s)	112, 541, 581
BstX2I	RGATCY	1 cut(s)	451
BstXI	CCANNNNNNTGG	1 cut(s)	580
BstYI	RGATCY	1 cut(s)	451
BsuRI	GGCC	2 cut(s)	542, 619
BtgI	CCRYGG	1 cut(s)	415
BtsCI	GGATG	2 cut(s)	268, 407
BveI	ACCTGC	1 cut(s)	304
CciI	TCATGA	1 cut(s)	60
Csp6I	GTAC	2 cut(s)	79, 464
CviAII	CATG	6 cut(s)	61, 76, 259, 416, 461, 533
CviJI	RGCY	7 cut(s)	180, 216, 230, 542, 554, 572, 619
CviKI_1	RGCY	7 cut(s)	180, 216, 230, 542, 554, 572, 619
CviQI	GTAC	2 cut(s)	79, 464
DpnI	GATC	3 cut(s)	88, 322, 453
DpnII	GATC	3 cut(s)	86, 320, 451
DraIII	CACNNNGTG	1 cut(s)	372
EaeI	YGGCCR	1 cut(s)	540
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
Eco130I	CCWWGG	1 cut(s)	415
Eco32I	GATATC	1 cut(s)	142
Eco57I	CTGAAG	2 cut(s)	67, 166
EcoRV	GATATC	1 cut(s)	142
EcoT14I	CCWWGG	1 cut(s)	415
ErhI	CCWWGG	1 cut(s)	415
Esp3I	CGTCTC	1 cut(s)	276
FaeI	CATG	6 cut(s)	64, 79, 262, 419, 464, 536
FatI	CATG	6 cut(s)	60, 75, 258, 415, 460, 532
Fnu4HI	GCNGC	3 cut(s)	126, 555, 570
FokI	GGATG	2 cut(s)	275, 414
Fsp4HI	GCNGC	3 cut(s)	126, 555, 570
FspBI	CTAG	2 cut(s)	305, 335
GluI	GCNGC	3 cut(s)	126, 555, 570
GsuI	CTGGAG	1 cut(s)	568
HaeIII	GGCC	2 cut(s)	542, 619
Hin1II	CATG	6 cut(s)	64, 79, 262, 419, 464, 536
HinfI	GANTC	4 cut(s)	5, 64, 203, 592
HphI	GGTGA	1 cut(s)	200
Hpy166II	GTNNAC	1 cut(s)	503
Hpy188I	TCNGA	3 cut(s)	86, 185, 240
Hpy188III	TCNNGA	7 cut(s)	61, 155, 305, 316, 500, 596, 643
Hpy8I	GTNNAC	1 cut(s)	503
HpyAV	CCTTC	4 cut(s)	311, 488, 514, 556
HpyCH4V	TGCA	5 cut(s)	75, 332, 391, 405, 488
Hsp92II	CATG	6 cut(s)	64, 79, 262, 419, 464, 536
Kzo9I	GATC	3 cut(s)	86, 320, 451
LpnPI	CCDG	5 cut(s)	226, 309, 532, 566, 590
Lsp1109I	GCAGC	3 cut(s)	112, 541, 581
LweI	GCATC	1 cut(s)	392
MaeI	CTAG	2 cut(s)	305, 335
MaeIII	GTNAC	1 cut(s)	456
MalI	GATC	3 cut(s)	88, 322, 453
MboI	GATC	3 cut(s)	86, 320, 451
MboII	GAAGA	9 cut(s)	90, 93, 96, 99, 108, 143, 212, 253, 354
MflI	RGATCY	1 cut(s)	451
MlsI	TGGCCA	1 cut(s)	542
MluCI	AATT	2 cut(s)	36, 327
MluNI	TGGCCA	1 cut(s)	542
MlyI	GAGTC	1 cut(s)	58
MnlI	CCTC	6 cut(s)	159, 179, 543, 602, 609, 624
Mox20I	TGGCCA	1 cut(s)	542
MroXI	GAANNNNTTC	1 cut(s)	638
MscI	TGGCCA	1 cut(s)	542
MseI	TTAA	2 cut(s)	92, 507
Msp20I	TGGCCA	1 cut(s)	542
MspCI	CTTAAG	1 cut(s)	506
MvnI	CGCG	1 cut(s)	201
NcoI	CCATGG	1 cut(s)	415
NdeII	GATC	3 cut(s)	86, 320, 451
NlaIII	CATG	6 cut(s)	64, 79, 262, 419, 464, 536
NmuCI	GTSAC	1 cut(s)	456
NspI	RCATGY	3 cut(s)	79, 464, 536
PagI	TCATGA	1 cut(s)	60
PciI	ACATGT	1 cut(s)	460
PdmI	GAANNNNTTC	1 cut(s)	638
PfeI	GAWTC	2 cut(s)	203, 592
PkrI	GCNGC	3 cut(s)	127, 556, 571
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
PscI	ACATGT	1 cut(s)	460
PsuI	RGATCY	1 cut(s)	451
RsaI	GTAC	2 cut(s)	80, 465
RsaNI	GTAC	2 cut(s)	79, 464
SaqAI	TTAA	2 cut(s)	92, 507
SatI	GCNGC	3 cut(s)	126, 555, 570
Sau3AI	GATC	3 cut(s)	86, 320, 451
SchI	GAGTC	1 cut(s)	58
SetI	ASST	5 cut(s)	182, 190, 257, 298, 499
SfaNI	GCATC	1 cut(s)	392
SmlI	CTYRAG	2 cut(s)	272, 506
SmoI	CTYRAG	2 cut(s)	272, 506
SpeI	ACTAGT	1 cut(s)	334
Sse9I	AATT	2 cut(s)	36, 327
SspI	AATATT	1 cut(s)	577
SspMI	CTAG	2 cut(s)	305, 335
StyI	CCWWGG	1 cut(s)	415
TaqI	TCGA	2 cut(s)	315, 323
TasI	AATT	2 cut(s)	36, 327
TatI	WGTACW	1 cut(s)	78
TfiI	GAWTC	2 cut(s)	203, 592
Tru1I	TTAA	2 cut(s)	92, 507
Tru9I	TTAA	2 cut(s)	92, 507
TseFI	GTSAC	1 cut(s)	456
TseI	GCWGC	3 cut(s)	125, 554, 569
Tsp45I	GTSAC	1 cut(s)	456
TspDTI	ATGAA	2 cut(s)	19, 207
TspGWI	ACGGA	1 cut(s)	444
Vha464I	CTTAAG	1 cut(s)	506
XbaI	TCTAGA	1 cut(s)	304
XceI	RCATGY	3 cut(s)	79, 464, 536
XmnI	GAANNNNTTC	1 cut(s)	638
XspI	CTAG	2 cut(s)	305, 335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.