Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002354.1

Orthogroup ID

OG0002558

Physical Location & Seq

Genomic Coordinates Reverse (-)

176854 .. 177599

Gene Structure 746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002354.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ctgaacctcaactctgaagaacaggataatctcagtatatttccttctccctcacagtgtgatctgttttgtttccagtggtttgcaagttctgattcccatcatttcgacaacatggcttcttcttcttctgctactgtcatccactccgagagaaagtatgatgtgtttcttaatttcagaggccacgacacccgcaagacttttactagccatctctacaaggctttagatgataagaagatcaacacctacatagattacaaacttgataaaggaggtgaaattgcacccgcccttctacaagcaatcgagggatcaaagatttctgtgatcattttctcagaacactatgcttcttctacatggtgtttggacgaacttgtgcatattctgaaatgcaaggaaagaaatgatgcggcatatgtgataccaatcttttacaaaatagagccagcagatgtacggttccagaagggtaattacgaacttgaacaacgtttcaaggacaaggtagagactgagcgtcgactcaaatggaaggatgctttgagaaaagcatctaatctctctggatttcattcaacttctagcaccgtcaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 NB-ARC TIR

Protein Analysis

201

Amino Acids

23.23

Weight (kDa)

6.77

Isoelectric Point (pI)

48.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20142
fragaria_vesca	FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730
malus_domestica	MD05G1140000.v1.1
prunus_persica	Prupe.1G120200_v2.0.a1
pyrus_communis	pycom03g08420 pycom04g02910 pycom10g12010 pycom10g12080 pycom10g12100
rosa_chinensis	RchiOBHm_Chr3g0451631 RchiOBHm_Chr5g0026391 RchiOBHm_Chr7g0241711
rosa_laevigata	RLG00000004786 RLG00000004787 RLG00000029480
rosa_multiflora	Rmu_co8097864.1_g000001 Rmu_sc0001689.1_g000015 Rmu_sc0002354.1_g000038 Rmu_sc0003469.1_g000013 Rmu_sc0006326.1_g000044 Rmu_sc0038436.1_g000001 Rmu_sc0043107.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053220 Rroxscaffold_3G00218740 Rroxscaffold_3G00267480 Rroxscaffold_4G00317010 Rroxscaffold_6G00397670 Rroxscaffold_6G00397680
rosa_rugosa	Rorug01G0112600 Rorug05G0000700 Rorug06G0259600 Rorug07G0346700
rosa_samantha	Rh7AG085700
rosa_wichuraiana	Rw1G011340 Rw7G007550 Rw7G042350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	529
AciI	CCGC	3 cut(s)	196, 294, 419
AclI	AACGTT	1 cut(s)	499
AclWI	GGATC	1 cut(s)	325
AcuI	CTGAAG	1 cut(s)	36
AdeI	CACNNNGTG	1 cut(s)	59
AfaI	GTAC	1 cut(s)	465
AgsI	TTSAA	3 cut(s)	494, 505, 585
AhdI	GACNNNNNGTC	1 cut(s)	525
Alw26I	GTCTC	1 cut(s)	512
AlwI	GGATC	1 cut(s)	325
AoxI	GGCC	1 cut(s)	184
AsuHPI	GGTGA	1 cut(s)	293
BarI	GAAGNNNNNNTAC	4 cut(s)	28, 60, 467, 499
BccI	CCATC	2 cut(s)	108, 222
BclI	TGATCA	1 cut(s)	333
BcoDI	GTCTC	1 cut(s)	512
BfaI	CTAG	2 cut(s)	210, 591
BisI	GCNGC	1 cut(s)	420
BlsI	GCNGC	1 cut(s)	421
BmeRI	GACNNNNNGTC	1 cut(s)	525
BmiI	GGNNCC	1 cut(s)	470
BmsI	GCATC	3 cut(s)	406, 535, 569
BsaBI	GATNNNNATC	2 cut(s)	99, 434
Bse1I	ACTGG	1 cut(s)	76
Bse8I	GATNNNNATC	2 cut(s)	99, 434
BseGI	GGATG	2 cut(s)	141, 550
BseJI	GATNNNNATC	2 cut(s)	99, 434
BseMII	CTCAG	3 cut(s)	46, 357, 513
BseNI	ACTGG	1 cut(s)	76
BshFI	GGCC	1 cut(s)	186
BsmAI	GTCTC	1 cut(s)	512
BsnI	GGCC	1 cut(s)	186
Bsp143I	GATC	4 cut(s)	61, 243, 317, 333
BspACI	CCGC	3 cut(s)	196, 294, 419
BspANI	GGCC	1 cut(s)	186
BspCNI	CTCAG	3 cut(s)	45, 356, 514
BspLI	GGNNCC	1 cut(s)	470
BspPI	GGATC	1 cut(s)	325
BsrI	ACTGG	1 cut(s)	76
BssMI	GATC	4 cut(s)	61, 243, 317, 333
Bst4CI	ACNGT	4 cut(s)	57, 139, 468, 598
BstC8I	GCNNGC	1 cut(s)	456
BstDEI	CTNAG	3 cut(s)	32, 343, 522
BstF5I	GGATG	2 cut(s)	141, 550
BstKTI	GATC	4 cut(s)	64, 246, 320, 336
BstMAI	GTCTC	1 cut(s)	512
BstMBI	GATC	4 cut(s)	61, 243, 317, 333
BsuRI	GGCC	1 cut(s)	186
BtsCI	GGATG	2 cut(s)	141, 550
BtsIMutI	CAGTG	2 cut(s)	62, 83
Cac8I	GCNNGC	1 cut(s)	456
CseI	GACGC	1 cut(s)	515
Csp6I	GTAC	1 cut(s)	464
CviAII	CATG	2 cut(s)	115, 366
CviJI	RGCY	5 cut(s)	119, 186, 213, 227, 454
CviKI_1	RGCY	5 cut(s)	119, 186, 213, 227, 454
CviQI	GTAC	1 cut(s)	464
DdeI	CTNAG	3 cut(s)	32, 343, 522
DpnI	GATC	4 cut(s)	63, 245, 319, 335
DpnII	GATC	4 cut(s)	61, 243, 317, 333
DraIII	CACNNNGTG	1 cut(s)	59
DriI	GACNNNNNGTC	1 cut(s)	525
Eam1105I	GACNNNNNGTC	1 cut(s)	525
Eco57I	CTGAAG	1 cut(s)	36
FaeI	CATG	2 cut(s)	118, 369
FaiI	YATR	9 cut(s)	38, 116, 162, 257, 354, 367, 390, 424, 426
FatI	CATG	2 cut(s)	114, 365
FauI	CCCGC	2 cut(s)	203, 301
FauNDI	CATATG	1 cut(s)	424
FbaI	TGATCA	1 cut(s)	333
FblI	GTMKAC	1 cut(s)	529
Fnu4HI	GCNGC	1 cut(s)	420
FokI	GGATG	2 cut(s)	128, 557
Fsp4HI	GCNGC	1 cut(s)	420
FspBI	CTAG	2 cut(s)	210, 591
GluI	GCNGC	1 cut(s)	420
HaeIII	GGCC	1 cut(s)	186
HgaI	GACGC	1 cut(s)	515
Hin1II	CATG	2 cut(s)	118, 369
HincII	GTYRAC	1 cut(s)	530
HindII	GTYRAC	1 cut(s)	530
HinfI	GANTC	2 cut(s)	95, 531
HphI	GGTGA	1 cut(s)	293
Hpy166II	GTNNAC	1 cut(s)	530
Hpy188I	TCNGA	6 cut(s)	16, 94, 151, 182, 346, 396
Hpy188III	TCNNGA	2 cut(s)	472, 573
Hpy8I	GTNNAC	1 cut(s)	530
Hpy99I	CGWCG	1 cut(s)	531
HpyAV	CCTTC	4 cut(s)	54, 308, 469, 535
HpyCH4III	ACNGT	4 cut(s)	57, 139, 468, 598
HpyCH4IV	ACGT	1 cut(s)	499
HpyCH4V	TGCA	4 cut(s)	86, 290, 388, 402
HpyF3I	CTNAG	3 cut(s)	32, 343, 522
HpySE526I	ACGT	1 cut(s)	499
Hsp92II	CATG	2 cut(s)	118, 369
Ksp22I	TGATCA	1 cut(s)	333
Kzo9I	GATC	4 cut(s)	61, 243, 317, 333
LpnPI	CCDG	6 cut(s)	8, 89, 468, 485, 558, 586
LweI	GCATC	3 cut(s)	406, 535, 569
MaeI	CTAG	2 cut(s)	210, 591
MaeII	ACGT	1 cut(s)	499
MalI	GATC	4 cut(s)	63, 245, 319, 335
MboI	GATC	4 cut(s)	61, 243, 317, 333
MboII	GAAGA	6 cut(s)	29, 114, 117, 120, 253, 351
MluCI	AATT	3 cut(s)	175, 285, 481
MlyI	GAGTC	1 cut(s)	525
MnlI	CCTC	5 cut(s)	17, 61, 176, 272, 307
MseI	TTAA	1 cut(s)	174
NdeI	CATATG	1 cut(s)	424
NdeII	GATC	4 cut(s)	61, 243, 317, 333
NlaIII	CATG	2 cut(s)	118, 369
NlaIV	GGNNCC	1 cut(s)	470
PfeI	GAWTC	1 cut(s)	95
PkrI	GCNGC	1 cut(s)	421
PleI	GAGTC	1 cut(s)	525
PpsI	GAGTC	1 cut(s)	525
Psp1406I	AACGTT	1 cut(s)	499
PspN4I	GGNNCC	1 cut(s)	470
RsaI	GTAC	1 cut(s)	465
RsaNI	GTAC	1 cut(s)	464
SalI	GTCGAC	1 cut(s)	528
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	1 cut(s)	420
Sau3AI	GATC	4 cut(s)	61, 243, 317, 333
SchI	GAGTC	1 cut(s)	525
SetI	ASST	6 cut(s)	9, 254, 283, 502, 516, 605
SfaNI	GCATC	3 cut(s)	406, 535, 569
Sse9I	AATT	3 cut(s)	175, 285, 481
SsiI	CCGC	3 cut(s)	196, 294, 419
SspMI	CTAG	2 cut(s)	210, 591
TaaI	ACNGT	4 cut(s)	57, 139, 468, 598
TaiI	ACGT	1 cut(s)	502
TaqI	TCGA	3 cut(s)	108, 312, 529
TasI	AATT	3 cut(s)	175, 285, 481
TauI	GCSGC	1 cut(s)	422
TfiI	GAWTC	1 cut(s)	95
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	2 cut(s)	62, 83
TspDTI	ATGAA	1 cut(s)	569
TspRI	CASTG	2 cut(s)	62, 83
XmiI	GTMKAC	1 cut(s)	529
XspI	CTAG	2 cut(s)	210, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.