Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002558

Physical Location & Seq

Genomic Coordinates Reverse (-)

1033256 .. 1035467

Gene Structure 2212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00218740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGCTTCTCCTTCTTGTTCTTCTGCACTTGGCAGCTTTAAGCATGATGTATTTCTTAGTTTTAGAGGGAAGGACACCCGCAAGACTTTTACGAGCCATCTTTGTGCGGCTTTAGTTAGTAATCACATCAACACCTACAAAGATGATGAAATCGAGAGGGGAGAGGAAATTGCACCAGCCCTTCTCCAAGCAATAGAGGCATCAAAACTTTCCGTAGTCATTTTATCACAAGGCTATGCTTCTTCCAGATGGTGCTTGAATGAACTCGCTCATATATTGGAATTGAAGGAAAGACACCAACAATCGGTTATACCCATTTTTTATGGGGTAGATCCATCACATGTACGGAATCAGAGGGAGAGTTATGCAACTGCATTTGTTCAACATGAGAAACATTTCAATCCAGACAAGGTGCTCAAGTGGAGGGAGGTTTTAACCAAAGCTTCCGATCTAGCTGGGTTTGATTCACGCAAGACTAGCCCCGATTCCAAGTTAGTTGAGGAAGTTCTGAAAGTTATTCAGAAGAAGTTGAAACGCAAATACTCAAGAGATTTGACCCCACAAGATGTCGGTGATGAAGACAGCCATTCAACGGATAAATGCTTCGAGTATGGTGGGATAGGACATTGGGCCGATGATAGCCCTTCGGCGAGTGATGAAGACAACCCTTCAACAGATAAATGCTTCGAGTATGGTGGGATAGGACAATGGGGTGATGACAGCCCTTCGGCAAGTGATGAAGACAGCCCTTCGGCGAGTGATGAAGATAGCCCTTCAGCAGATAAATGCTCCGAGTGTGATGTCAAGGAATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

271

Amino Acids

30.12

Weight (kDa)

5.03

Isoelectric Point (pI)

57.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	14 - 183	4.4e-54	TIR domain
TIR_2	PF13676	17 - 113	7.5e-15	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20142
fragaria_vesca	FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730
malus_domestica	MD05G1140000.v1.1
prunus_persica	Prupe.1G120200_v2.0.a1
pyrus_communis	pycom03g08420 pycom04g02910 pycom10g12010 pycom10g12080 pycom10g12100
rosa_chinensis	RchiOBHm_Chr3g0451631 RchiOBHm_Chr5g0026391 RchiOBHm_Chr7g0241711
rosa_laevigata	RLG00000004786 RLG00000004787 RLG00000029480
rosa_multiflora	Rmu_co8097864.1_g000001 Rmu_sc0001689.1_g000015 Rmu_sc0002354.1_g000038 Rmu_sc0003469.1_g000013 Rmu_sc0006326.1_g000044 Rmu_sc0038436.1_g000001 Rmu_sc0043107.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053220 Rroxscaffold_3G00218740 Rroxscaffold_3G00267480 Rroxscaffold_4G00317010 Rroxscaffold_6G00397670 Rroxscaffold_6G00397680
rosa_rugosa	Rorug01G0112600 Rorug05G0000700 Rorug06G0259600 Rorug07G0346700
rosa_samantha	Rh7AG085700
rosa_wichuraiana	Rw1G011340 Rw7G007550 Rw7G042350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	79, 107
AclWI	GGATC	1 cut(s)	326
AcuI	CTGAAG	1 cut(s)	759
AfaI	GTAC	1 cut(s)	345
AfiI	CCNNNNNNNGG	2 cut(s)	304, 592
AflIII	ACRYGT	1 cut(s)	340
AgsI	TTSAA	7 cut(s)	259, 286, 383, 400, 532, 591, 672
AluBI	AGCT	3 cut(s)	36, 443, 455
AluI	AGCT	3 cut(s)	36, 443, 455
Alw21I	GWGCWC	1 cut(s)	417
AlwI	GGATC	1 cut(s)	326
AoxI	GGCC	1 cut(s)	630
ApeKI	GCWGC	1 cut(s)	33
Asp700I	GAANNNNTTC	1 cut(s)	395
AspS9I	GGNCC	1 cut(s)	630
AsuHPI	GGTGA	2 cut(s)	584, 725
BbsI	GAAGAC	3 cut(s)	585, 666, 747
Bbv12I	GWGCWC	1 cut(s)	417
BbvI	GCAGC	1 cut(s)	45
BccI	CCATC	3 cut(s)	105, 243, 343
BfaI	CTAG	2 cut(s)	452, 477
BisI	GCNGC	2 cut(s)	34, 108
BlsI	GCNGC	2 cut(s)	35, 109
BmgT120I	GGNCC	1 cut(s)	630
BmsI	GCATC	1 cut(s)	209
BpiI	GAAGAC	3 cut(s)	585, 666, 747
BpuEI	CTTGAG	2 cut(s)	401, 529
Bsc4I	CCNNNNNNNGG	2 cut(s)	304, 592
BseLI	CCNNNNNNNGG	2 cut(s)	304, 592
BseXI	GCAGC	1 cut(s)	45
BseYI	CCCAGC	1 cut(s)	455
BsgI	GTGCAG	1 cut(s)	9
BshFI	GGCC	1 cut(s)	632
BsiHKAI	GWGCWC	1 cut(s)	417
BslI	CCNNNNNNNGG	2 cut(s)	304, 592
BsnI	GGCC	1 cut(s)	632
Bsp1286I	GDGCHC	1 cut(s)	417
Bsp143I	GATC	2 cut(s)	331, 448
BspACI	CCGC	2 cut(s)	79, 107
BspANI	GGCC	1 cut(s)	632
BspPI	GGATC	1 cut(s)	326
BssMI	GATC	2 cut(s)	331, 448
BstDEI	CTNAG	1 cut(s)	56
BstKTI	GATC	2 cut(s)	334, 451
BstMBI	GATC	2 cut(s)	331, 448
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 477
BstNSI	RCATGY	1 cut(s)	344
BstV1I	GCAGC	1 cut(s)	45
BstV2I	GAAGAC	3 cut(s)	585, 666, 747
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BsuRI	GGCC	1 cut(s)	632
Cfr13I	GGNCC	1 cut(s)	630
Csp6I	GTAC	1 cut(s)	344
CviAII	CATG	3 cut(s)	44, 341, 386
CviQI	GTAC	1 cut(s)	344
DdeI	CTNAG	1 cut(s)	56
DpnI	GATC	2 cut(s)	333, 450
DpnII	GATC	2 cut(s)	331, 448
Eco57I	CTGAAG	1 cut(s)	759
FaeI	CATG	3 cut(s)	47, 344, 389
FatI	CATG	3 cut(s)	43, 340, 385
FauI	CCCGC	1 cut(s)	86
Fnu4HI	GCNGC	2 cut(s)	34, 108
Fsp4HI	GCNGC	2 cut(s)	34, 108
FspBI	CTAG	2 cut(s)	452, 477
GluI	GCNGC	2 cut(s)	34, 108
GsaI	CCCAGC	1 cut(s)	459
HaeIII	GGCC	1 cut(s)	632
Hin1II	CATG	3 cut(s)	47, 344, 389
HindIII	AAGCTT	1 cut(s)	441
HinfI	GANTC	3 cut(s)	349, 464, 485
HphI	GGTGA	2 cut(s)	584, 725
Hpy188I	TCNGA	5 cut(s)	354, 448, 510, 522, 793
Hpy188III	TCNNGA	4 cut(s)	154, 246, 404, 546
HpyAV	CCTTC	9 cut(s)	21, 64, 191, 280, 654, 678, 735, 759, 783
HpyCH4V	TGCA	4 cut(s)	26, 173, 368, 374
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 477
HpyF3I	CTNAG	1 cut(s)	56
Hsp92II	CATG	3 cut(s)	47, 344, 389
Kzo9I	GATC	2 cut(s)	331, 448
LmnI	GCTCC	1 cut(s)	794
LpnPI	CCDG	4 cut(s)	189, 259, 417, 441
Lsp1109I	GCAGC	1 cut(s)	45
LweI	GCATC	1 cut(s)	209
MaeI	CTAG	2 cut(s)	452, 477
MalI	GATC	2 cut(s)	333, 450
MboI	GATC	2 cut(s)	331, 448
MboII	GAAGA	7 cut(s)	12, 234, 535, 590, 671, 752, 776
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	1 cut(s)	417
MluCI	AATT	3 cut(s)	168, 281, 809
MnlI	CCTC	8 cut(s)	59, 150, 157, 190, 348, 417, 421, 493
MroXI	GAANNNNTTC	1 cut(s)	395
MseI	TTAA	2 cut(s)	39, 434
MslI	CAYNNNNRTG	1 cut(s)	102
MwoI	GCNNNNNNNGC	2 cut(s)	197, 477
NdeII	GATC	2 cut(s)	331, 448
NlaIII	CATG	3 cut(s)	47, 344, 389
NspI	RCATGY	1 cut(s)	344
PciI	ACATGT	1 cut(s)	340
PdmI	GAANNNNTTC	1 cut(s)	395
PfeI	GAWTC	3 cut(s)	349, 464, 485
PkrI	GCNGC	2 cut(s)	35, 109
PscI	ACATGT	1 cut(s)	340
PspFI	CCCAGC	1 cut(s)	455
PspPI	GGNCC	1 cut(s)	630
PsuI	RGATCY	1 cut(s)	331
RsaI	GTAC	1 cut(s)	345
RsaNI	GTAC	1 cut(s)	344
RseI	CAYNNNNRTG	1 cut(s)	102
SaqAI	TTAA	2 cut(s)	39, 434
SatI	GCNGC	2 cut(s)	34, 108
Sau3AI	GATC	2 cut(s)	331, 448
Sau96I	GGNCC	1 cut(s)	630
SduI	GDGCHC	1 cut(s)	417
SetI	ASST	6 cut(s)	38, 137, 414, 432, 445, 457
SfaNI	GCATC	1 cut(s)	209
SmiMI	CAYNNNNRTG	1 cut(s)	102
SmlI	CTYRAG	2 cut(s)	416, 544
SmoI	CTYRAG	2 cut(s)	416, 544
Sse9I	AATT	3 cut(s)	168, 281, 809
SsiI	CCGC	2 cut(s)	79, 107
SspMI	CTAG	2 cut(s)	452, 477
TaqI	TCGA	3 cut(s)	153, 606, 687
TasI	AATT	3 cut(s)	168, 281, 809
TauI	GCSGC	1 cut(s)	110
TfiI	GAWTC	3 cut(s)	349, 464, 485
Tru1I	TTAA	2 cut(s)	39, 434
Tru9I	TTAA	2 cut(s)	39, 434
TseI	GCWGC	1 cut(s)	33
TspDTI	ATGAA	6 cut(s)	162, 276, 591, 672, 753, 777
TspGWI	ACGGA	3 cut(s)	202, 361, 608
XceI	RCATGY	1 cut(s)	344
XmnI	GAANNNNTTC	1 cut(s)	395
XspI	CTAG	2 cut(s)	452, 477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.