Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002558

Physical Location & Seq

Genomic Coordinates Forward (+)

2630174 .. 2632611

Gene Structure 2438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41887

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGCTTCCTCCTCTGTTTCTTCTTCTGTCATCCCCCCAAAAGAAAAGTATGATGTTTTTCTCAGTTTCAGAGGCGCGGATACTCGCCAGACTTTTACCAGCCATCTTCTTGCTGCTTTGATACGGTGGAAAGTGAAAACCTTCATTGATTACGGACTGGAGAGAGGAGATGAAGTTGGACCCGCCCTTCTAAAAGCAATAAAAGAATCAAGGATTTCCGTGATCATTTTCTCGAAAGACTATGCTTCTTCCGCATGGTGCTTTGAAGAACTTGCTTGTATACTGGAATGCATGGAAAAACATGGACAATATGTTATACCTATTTTTTACGAGATAGAACCATCACAAGTGCGCTACCAGACCGGAAGTTATGAGACTGCATTTGCTCAACATGAACAATGGTTGAAGGACGACAAGACGGACAAGGTGGCCAAGTGGAAGGAAGCTTTAGTAAAAGCAGCTGGCCTATCTGGGTCTGATTCAACTTCAAAAAATTTCGGGATGATTCCGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

171

Amino Acids

19.25

Weight (kDa)

6.31

Isoelectric Point (pI)

39.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	16 - 164	4.2e-50	TIR domain
TIR_2	PF13676	19 - 114	1.8e-13	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20142
fragaria_vesca	FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730
malus_domestica	MD05G1140000.v1.1
prunus_persica	Prupe.1G120200_v2.0.a1
pyrus_communis	pycom03g08420 pycom04g02910 pycom10g12010 pycom10g12080 pycom10g12100
rosa_chinensis	RchiOBHm_Chr3g0451631 RchiOBHm_Chr5g0026391 RchiOBHm_Chr7g0241711
rosa_laevigata	RLG00000004786 RLG00000004787 RLG00000029480
rosa_multiflora	Rmu_co8097864.1_g000001 Rmu_sc0001689.1_g000015 Rmu_sc0002354.1_g000038 Rmu_sc0003469.1_g000013 Rmu_sc0006326.1_g000044 Rmu_sc0038436.1_g000001 Rmu_sc0043107.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053220 Rroxscaffold_3G00218740 Rroxscaffold_3G00267480 Rroxscaffold_4G00317010 Rroxscaffold_6G00397670 Rroxscaffold_6G00397680
rosa_rugosa	Rorug01G0112600 Rorug05G0000700 Rorug06G0259600 Rorug07G0346700
rosa_samantha	Rh7AG085700
rosa_wichuraiana	Rw1G011340 Rw7G007550 Rw7G042350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	280
AccII	CGCG	1 cut(s)	77
AciI	CCGC	4 cut(s)	77, 183, 252, 509
AcoI	YGGCCR	1 cut(s)	429
AcsI	RAATTY	1 cut(s)	493
AgsI	TTSAA	4 cut(s)	266, 406, 483, 489
AluBI	AGCT	2 cut(s)	446, 461
AluI	AGCT	2 cut(s)	446, 461
Alw26I	GTCTC	1 cut(s)	368
AoxI	GGCC	2 cut(s)	429, 463
ApeKI	GCWGC	2 cut(s)	113, 458
ApoI	RAATTY	1 cut(s)	493
Asp700I	GAANNNNTTC	1 cut(s)	140
AspLEI	GCGC	2 cut(s)	77, 354
AspS9I	GGNCC	1 cut(s)	179
AvaII	GGWCC	1 cut(s)	179
BalI	TGGCCA	1 cut(s)	431
BbvI	GCAGC	2 cut(s)	100, 470
BccI	CCATC	2 cut(s)	111, 349
BciVI	GTATCC	1 cut(s)	73
BclI	TGATCA	1 cut(s)	222
BcoDI	GTCTC	1 cut(s)	368
BfuI	GTATCC	1 cut(s)	73
BisI	GCNGC	2 cut(s)	114, 459
BlsI	GCNGC	2 cut(s)	115, 460
Bme18I	GGWCC	1 cut(s)	179
BmgT120I	GGNCC	1 cut(s)	179
BmiI	GGNNCC	1 cut(s)	181
BpmI	CTGGAG	1 cut(s)	179
BsaWI	WCCGGW	1 cut(s)	362
BsaXI	ACNNNNNCTCC	2 cut(s)	159, 189
Bse1I	ACTGG	2 cut(s)	162, 288
BseGI	GGATG	2 cut(s)	30, 507
BseMII	CTCAG	1 cut(s)	76
BseNI	ACTGG	2 cut(s)	162, 288
BseRI	GAGGAG	1 cut(s)	180
BseXI	GCAGC	2 cut(s)	100, 470
Bsh1236I	CGCG	1 cut(s)	77
BshFI	GGCC	2 cut(s)	431, 465
BsiSI	CCGG	1 cut(s)	363
BsmAI	GTCTC	1 cut(s)	368
BsmI	GAATGC	1 cut(s)	293
BsnI	GGCC	2 cut(s)	431, 465
Bsp143I	GATC	1 cut(s)	222
BspACI	CCGC	4 cut(s)	77, 183, 252, 509
BspANI	GGCC	2 cut(s)	431, 465
BspCNI	CTCAG	1 cut(s)	75
BspFNI	CGCG	1 cut(s)	77
BspLI	GGNNCC	1 cut(s)	181
BsrI	ACTGG	2 cut(s)	162, 288
BssMI	GATC	1 cut(s)	222
BssNAI	GTATAC	1 cut(s)	281
Bst1107I	GTATAC	1 cut(s)	281
Bst4CI	ACNGT	1 cut(s)	126
BstC8I	GCNNGC	1 cut(s)	463
BstDEI	CTNAG	1 cut(s)	62
BstF5I	GGATG	2 cut(s)	30, 507
BstFNI	CGCG	1 cut(s)	77
BstHHI	GCGC	2 cut(s)	77, 354
BstKTI	GATC	1 cut(s)	225
BstMAI	GTCTC	1 cut(s)	368
BstMBI	GATC	1 cut(s)	222
BstMWI	GCNNNNNNNGC	1 cut(s)	251
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	2 cut(s)	100, 470
BstZ17I	GTATAC	1 cut(s)	281
BsuI	GTATCC	1 cut(s)	73
BsuRI	GGCC	2 cut(s)	431, 465
BtsCI	GGATG	2 cut(s)	30, 507
Cac8I	GCNNGC	1 cut(s)	463
CfoI	GCGC	2 cut(s)	77, 354
Cfr13I	GGNCC	1 cut(s)	179
CviAII	CATG	4 cut(s)	255, 292, 302, 392
CviJI	RGCY	6 cut(s)	5, 102, 431, 446, 461, 465
CviKI_1	RGCY	6 cut(s)	5, 102, 431, 446, 461, 465
DdeI	CTNAG	1 cut(s)	62
DpnI	GATC	1 cut(s)	224
DpnII	GATC	1 cut(s)	222
EaeI	YGGCCR	1 cut(s)	429
Eco47I	GGWCC	1 cut(s)	179
EcoT22I	ATGCAT	1 cut(s)	293
FaeI	CATG	4 cut(s)	258, 295, 305, 395
FatI	CATG	4 cut(s)	254, 291, 301, 391
FauI	CCCGC	1 cut(s)	190
FbaI	TGATCA	1 cut(s)	222
FblI	GTMKAC	1 cut(s)	280
Fnu4HI	GCNGC	2 cut(s)	114, 459
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	2 cut(s)	114, 459
GlaI	GCGC	2 cut(s)	76, 353
GluI	GCNGC	2 cut(s)	114, 459
GsuI	CTGGAG	1 cut(s)	179
HaeIII	GGCC	2 cut(s)	431, 465
HapII	CCGG	1 cut(s)	363
HhaI	GCGC	2 cut(s)	77, 354
Hin1II	CATG	4 cut(s)	258, 295, 305, 395
Hin6I	GCGC	2 cut(s)	75, 352
HinP1I	GCGC	2 cut(s)	75, 352
HindIII	AAGCTT	1 cut(s)	444
HinfI	GANTC	3 cut(s)	206, 479, 505
HpaII	CCGG	1 cut(s)	363
Hpy166II	GTNNAC	1 cut(s)	281
Hpy188I	TCNGA	2 cut(s)	71, 478
Hpy188III	TCNNGA	2 cut(s)	232, 499
Hpy8I	GTNNAC	1 cut(s)	281
HpyAV	CCTTC	4 cut(s)	151, 197, 400, 433
HpyCH4III	ACNGT	1 cut(s)	126
HpyCH4V	TGCA	2 cut(s)	291, 380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	251
HpyF3I	CTNAG	1 cut(s)	62
Hsp92II	CATG	4 cut(s)	258, 295, 305, 395
HspAI	GCGC	2 cut(s)	75, 352
Ksp22I	TGATCA	1 cut(s)	222
Kzo9I	GATC	1 cut(s)	222
LpnPI	CCDG	8 cut(s)	101, 112, 143, 269, 371, 376, 447, 456
Lsp1109I	GCAGC	2 cut(s)	100, 470
MalI	GATC	1 cut(s)	224
MboI	GATC	1 cut(s)	222
MboII	GAAGA	5 cut(s)	12, 15, 98, 240, 278
MlsI	TGGCCA	1 cut(s)	431
MluCI	AATT	1 cut(s)	493
MluNI	TGGCCA	1 cut(s)	431
MmeI	TCCRAC	1 cut(s)	157
MnlI	CCTC	4 cut(s)	19, 22, 65, 158
Mox20I	TGGCCA	1 cut(s)	431
Mph1103I	ATGCAT	1 cut(s)	293
MroXI	GAANNNNTTC	1 cut(s)	140
MscI	TGGCCA	1 cut(s)	431
Msp20I	TGGCCA	1 cut(s)	431
MspA1I	CMGCKG	1 cut(s)	461
MspI	CCGG	1 cut(s)	363
Mva1269I	GAATGC	1 cut(s)	293
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	1 cut(s)	251
NdeII	GATC	1 cut(s)	222
NlaIII	CATG	4 cut(s)	258, 295, 305, 395
NlaIV	GGNNCC	1 cut(s)	181
NsiI	ATGCAT	1 cut(s)	293
PctI	GAATGC	1 cut(s)	293
PdmI	GAANNNNTTC	1 cut(s)	140
PfeI	GAWTC	3 cut(s)	206, 479, 505
PkrI	GCNGC	2 cut(s)	115, 460
PspN4I	GGNNCC	1 cut(s)	181
PspPI	GGNCC	1 cut(s)	179
PvuII	CAGCTG	1 cut(s)	461
SatI	GCNGC	2 cut(s)	114, 459
Sau3AI	GATC	1 cut(s)	222
Sau96I	GGNCC	1 cut(s)	179
SetI	ASST	5 cut(s)	143, 322, 429, 448, 463
SinI	GGWCC	1 cut(s)	179
Sse9I	AATT	1 cut(s)	493
SsiI	CCGC	4 cut(s)	77, 183, 252, 509
TaaI	ACNGT	1 cut(s)	126
TaqI	TCGA	1 cut(s)	233
TasI	AATT	1 cut(s)	493
TfiI	GAWTC	3 cut(s)	206, 479, 505
TseI	GCWGC	2 cut(s)	113, 458
TspDTI	ATGAA	3 cut(s)	133, 186, 408
TspGWI	ACGGA	3 cut(s)	168, 208, 434
VpaK11BI	GGWCC	1 cut(s)	179
XapI	RAATTY	1 cut(s)	493
XmiI	GTMKAC	1 cut(s)	280
XmnI	GAANNNNTTC	1 cut(s)	140
Zsp2I	ATGCAT	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.