Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0043107.1

Orthogroup ID

OG0002558

Physical Location & Seq

Genomic Coordinates Reverse (-)

233 .. 757

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0043107.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atggcctgtaatggagcctcttcttcctctggttctctcaccccttcatgcagacatgatgtgtttttgagttttagaggtacagatacgcgctccggttttacatataatctgtacaaggctttagatagagagaaaatcaagactttctttgatgatcgtacgctcaagagaggagagaacatatcagcagcacttcttcacgcaattgaagtttcaaggatttctgtggtgatatgctctgaaaactacgcttcttcaagttggtgcttggatgaactcgtcaagatccttgaatgtcaaaaatcaaagcagcagattgttattccagtattttacaaagtggatccagcacatgtacgacatcaaattggtagttttggtcaggcccttaccgtcttgaaatacaacgaggacaaggtccccggatggaggatagctcttacacaagtagcaaatttgtctggatggacttatgtggacgggtatgttaaatacaagaaatttaaagattttagaaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

174

Amino Acids

19.7

Weight (kDa)

9.19

Isoelectric Point (pI)

37.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20142
fragaria_vesca	FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730
malus_domestica	MD05G1140000.v1.1
prunus_persica	Prupe.1G120200_v2.0.a1
pyrus_communis	pycom03g08420 pycom04g02910 pycom10g12010 pycom10g12080 pycom10g12100
rosa_chinensis	RchiOBHm_Chr3g0451631 RchiOBHm_Chr5g0026391 RchiOBHm_Chr7g0241711
rosa_laevigata	RLG00000004786 RLG00000004787 RLG00000029480
rosa_multiflora	Rmu_co8097864.1_g000001 Rmu_sc0001689.1_g000015 Rmu_sc0002354.1_g000038 Rmu_sc0003469.1_g000013 Rmu_sc0006326.1_g000044 Rmu_sc0038436.1_g000001 Rmu_sc0043107.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053220 Rroxscaffold_3G00218740 Rroxscaffold_3G00267480 Rroxscaffold_4G00317010 Rroxscaffold_6G00397670 Rroxscaffold_6G00397680
rosa_rugosa	Rorug01G0112600 Rorug05G0000700 Rorug06G0259600 Rorug07G0346700
rosa_samantha	Rh7AG085700
rosa_wichuraiana	Rw1G011340 Rw7G007550 Rw7G042350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	91
AclWI	GGATC	3 cut(s)	283, 341, 354
AcsI	RAATTY	2 cut(s)	457, 503
AfaI	GTAC	4 cut(s)	82, 116, 163, 360
AfiI	CCNNNNNNNGG	1 cut(s)	432
AflIII	ACRYGT	1 cut(s)	355
AgsI	TTSAA	5 cut(s)	212, 219, 261, 296, 403
AluBI	AGCT	1 cut(s)	440
AluI	AGCT	1 cut(s)	440
AlwI	GGATC	3 cut(s)	283, 341, 354
AoxI	GGCC	2 cut(s)	3, 387
ApeKI	GCWGC	2 cut(s)	191, 313
ApoI	RAATTY	2 cut(s)	457, 503
AspLEI	GCGC	1 cut(s)	93
AspS9I	GGNCC	2 cut(s)	388, 421
AsuC2I	CCSGG	1 cut(s)	426
AsuHPI	GGTGA	2 cut(s)	31, 244
AvaII	GGWCC	1 cut(s)	421
BamHI	GGATCC	1 cut(s)	346
BbvI	GCAGC	2 cut(s)	203, 325
BccI	CCATC	2 cut(s)	423, 462
BcnI	CCSGG	1 cut(s)	426
BisI	GCNGC	2 cut(s)	192, 314
BlsI	GCNGC	2 cut(s)	193, 315
Bme1390I	CCNGG	1 cut(s)	426
Bme18I	GGWCC	1 cut(s)	421
BmgT120I	GGNCC	2 cut(s)	388, 421
BmiI	GGNNCC	3 cut(s)	16, 348, 423
BmrFI	CCNGG	1 cut(s)	426
BplI	GAGNNNNNCTC	2 cut(s)	424, 456
BpuEI	CTTGAG	1 cut(s)	152
BpuMI	CCSGG	1 cut(s)	426
BsaJI	CCNNGG	1 cut(s)	424
BsaWI	WCCGGW	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	1 cut(s)	432
Bse1I	ACTGG	1 cut(s)	329
BseDI	CCNNGG	1 cut(s)	424
BseGI	GGATG	3 cut(s)	280, 434, 473
BseLI	CCNNNNNNNGG	1 cut(s)	432
BseNI	ACTGG	1 cut(s)	329
BseRI	GAGGAG	1 cut(s)	189
BseXI	GCAGC	2 cut(s)	203, 325
Bsh1236I	CGCG	1 cut(s)	91
BshFI	GGCC	2 cut(s)	5, 389
BsiSI	CCGG	2 cut(s)	96, 426
BsiWI	CGTACG	1 cut(s)	161
BslFI	GGGAC	1 cut(s)	407
BslI	CCNNNNNNNGG	1 cut(s)	432
BsmFI	GGGAC	1 cut(s)	407
BsnI	GGCC	2 cut(s)	5, 389
Bsp1407I	TGTACA	1 cut(s)	114
Bsp143I	GATC	3 cut(s)	157, 288, 346
BspANI	GGCC	2 cut(s)	5, 389
BspFNI	CGCG	1 cut(s)	91
BspLI	GGNNCC	3 cut(s)	16, 348, 423
BspPI	GGATC	3 cut(s)	283, 341, 354
BsrGI	TGTACA	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	329
BssECI	CCNNGG	1 cut(s)	424
BssMI	GATC	3 cut(s)	157, 288, 346
Bst4CI	ACNGT	1 cut(s)	397
Bst6I	CTCTTC	1 cut(s)	25
BstAUI	TGTACA	1 cut(s)	114
BstF5I	GGATG	3 cut(s)	280, 434, 473
BstFNI	CGCG	1 cut(s)	91
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	3 cut(s)	160, 291, 349
BstMBI	GATC	3 cut(s)	157, 288, 346
BstNSI	RCATGY	1 cut(s)	359
BstSCI	CCNGG	1 cut(s)	424
BstUI	CGCG	1 cut(s)	91
BstV1I	GCAGC	2 cut(s)	203, 325
BstX2I	RGATCY	2 cut(s)	288, 346
BstYI	RGATCY	2 cut(s)	288, 346
BsuRI	GGCC	2 cut(s)	5, 389
BtsCI	GGATG	3 cut(s)	280, 434, 473
CfoI	GCGC	1 cut(s)	93
Cfr13I	GGNCC	2 cut(s)	388, 421
Csp6I	GTAC	4 cut(s)	81, 115, 162, 359
CviAII	CATG	3 cut(s)	48, 56, 356
CviJI	RGCY	5 cut(s)	5, 17, 122, 389, 440
CviKI_1	RGCY	5 cut(s)	5, 17, 122, 389, 440
CviQI	GTAC	4 cut(s)	81, 115, 162, 359
DpnI	GATC	3 cut(s)	159, 290, 348
DpnII	GATC	3 cut(s)	157, 288, 346
DraI	TTTAAA	1 cut(s)	508
Eam1104I	CTCTTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	25
Eco47I	GGWCC	1 cut(s)	421
EcoO109I	RGGNCCY	2 cut(s)	388, 421
FaeI	CATG	3 cut(s)	51, 59, 359
FaiI	YATR	9 cut(s)	49, 57, 106, 108, 185, 238, 357, 477, 489
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FaqI	GGGAC	1 cut(s)	407
FatI	CATG	3 cut(s)	47, 55, 355
Fnu4HI	GCNGC	2 cut(s)	192, 314
FokI	GGATG	3 cut(s)	287, 441, 480
Fsp4HI	GCNGC	2 cut(s)	192, 314
GlaI	GCGC	1 cut(s)	92
GluI	GCNGC	2 cut(s)	192, 314
HaeIII	GGCC	2 cut(s)	5, 389
HapII	CCGG	2 cut(s)	96, 426
HhaI	GCGC	1 cut(s)	93
Hin1II	CATG	3 cut(s)	51, 59, 359
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HpaII	CCGG	2 cut(s)	96, 426
HphI	GGTGA	2 cut(s)	31, 244
Hpy166II	GTNNAC	1 cut(s)	481
Hpy188I	TCNGA	1 cut(s)	244
Hpy188III	TCNNGA	5 cut(s)	142, 169, 286, 400, 465
Hpy8I	GTNNAC	1 cut(s)	481
HpyAV	CCTTC	1 cut(s)	54
HpyCH4III	ACNGT	1 cut(s)	397
HpyCH4V	TGCA	1 cut(s)	51
Hsp92II	CATG	3 cut(s)	51, 59, 359
HspAI	GCGC	1 cut(s)	91
Kzo9I	GATC	3 cut(s)	157, 288, 346
LmnI	GCTCC	2 cut(s)	14, 98
LpnPI	CCDG	8 cut(s)	15, 19, 109, 342, 363, 371, 439, 450
Lsp1109I	GCAGC	2 cut(s)	203, 325
MalI	GATC	3 cut(s)	159, 290, 348
MboI	GATC	3 cut(s)	157, 288, 346
MboII	GAAGA	4 cut(s)	12, 15, 191, 249
MfeI	CAATTG	1 cut(s)	207
MflI	RGATCY	2 cut(s)	288, 346
MluCI	AATT	5 cut(s)	207, 369, 457, 503, 520
MnlI	CCTC	6 cut(s)	28, 37, 71, 167, 406, 426
MseI	TTAA	2 cut(s)	492, 507
MspI	CCGG	2 cut(s)	96, 426
MspR9I	CCNGG	1 cut(s)	426
MunI	CAATTG	1 cut(s)	207
MvnI	CGCG	1 cut(s)	91
NciI	CCSGG	1 cut(s)	426
NdeII	GATC	3 cut(s)	157, 288, 346
NlaIII	CATG	3 cut(s)	51, 59, 359
NlaIV	GGNNCC	3 cut(s)	16, 348, 423
NspI	RCATGY	1 cut(s)	359
PciI	ACATGT	1 cut(s)	355
Pfl23II	CGTACG	1 cut(s)	161
PflFI	GACNNNGTC	1 cut(s)	419
PkrI	GCNGC	2 cut(s)	193, 315
PpuMI	RGGWCCY	1 cut(s)	421
PscI	ACATGT	1 cut(s)	355
Psp5II	RGGWCCY	1 cut(s)	421
PspLI	CGTACG	1 cut(s)	161
PspN4I	GGNNCC	3 cut(s)	16, 348, 423
PspPI	GGNCC	2 cut(s)	388, 421
PspPPI	RGGWCCY	1 cut(s)	421
PsuI	RGATCY	2 cut(s)	288, 346
PsyI	GACNNNGTC	1 cut(s)	419
RsaI	GTAC	4 cut(s)	82, 116, 163, 360
RsaNI	GTAC	4 cut(s)	81, 115, 162, 359
SaqAI	TTAA	2 cut(s)	492, 507
SatI	GCNGC	2 cut(s)	192, 314
Sau3AI	GATC	3 cut(s)	157, 288, 346
Sau96I	GGNCC	2 cut(s)	388, 421
ScrFI	CCNGG	1 cut(s)	426
SetI	ASST	3 cut(s)	82, 423, 442
SinI	GGWCC	1 cut(s)	421
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	5 cut(s)	207, 369, 457, 503, 520
StyD4I	CCNGG	1 cut(s)	424
TaaI	ACNGT	1 cut(s)	397
TasI	AATT	5 cut(s)	207, 369, 457, 503, 520
TatI	WGTACW	1 cut(s)	114
Tru1I	TTAA	2 cut(s)	492, 507
Tru9I	TTAA	2 cut(s)	492, 507
TseI	GCWGC	2 cut(s)	191, 313
TspDTI	ATGAA	2 cut(s)	36, 291
Tth111I	GACNNNGTC	1 cut(s)	419
VpaK11BI	GGWCC	1 cut(s)	421
XapI	RAATTY	2 cut(s)	457, 503
XceI	RCATGY	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.