Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002558

Physical Location & Seq

Genomic Coordinates Forward (+)

41976000 .. 41978099

Gene Structure 2100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00317010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGCTTCTCTTTCTCGTTCTTCTGCACCTGGCAGTTTTGAGTATGACGTCTTTCTTAGTTTTAGAGGGCCGGACACCCGCAAGACTTTTACCAGGCAACTTCATGAGCCTTTAGACAGGAAACAAATCAATACCTTCATAGATGACGAAATTGAGCGCGGAGAGGAAATTGAACCAACCCTTCTCCAAGCAATAGAGGCATCCAAACTTTCCGTAGTGATTTTGTCACAAGGCTATGCTTCTTCCACATTGTGCTTGGATGAACTTGCTCATATATTGGAATGCAAGAAAAGATGCCAACAATCGGTTTTACCCATTTTTTATCGGGTAGATCCATCACAAGTAAGAGATCAGAGGGAGAGTTATGCAGATGCATTTGTTCAGCATGAAGTACATTTCAAGGACACGCCAGACAAGGTGCGCAGGTGGAGGGATGCTTTAACCAAAGCTTCCAAAATAGCTGGGTTTATTTCACGCAACATTGGCCCCGATTACAAATTAGTTGAGGAAGTTGTGAGAGATATTGTGTGGAAGTTGAGCCGCAAATGCATTGCCCCACAAGATGTTGGAGAAGATGACTGCTTCAAGTGTGGTGGCATAGGACATTGGGCCCAACACTGCCCTTCAGCAGGTGAATGTTTCAAGTGTGGTGGGATAGGACATTGGGCCCAACATTGCCCTTCAGCAGGTGAATGTTTCAAGTGTGGTGGGATAGGACATTGGGCCCAACATTGCCCTTCGGTGGTGAATGTTTCAAGTGTCGCGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

256

Amino Acids

28.61

Weight (kDa)

6.36

Isoelectric Point (pI)

52.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	15 - 181	7.7e-50	TIR domain
TIR_2	PF13676	17 - 126	1.9e-13	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20142
fragaria_vesca	FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730
malus_domestica	MD05G1140000.v1.1
prunus_persica	Prupe.1G120200_v2.0.a1
pyrus_communis	pycom03g08420 pycom04g02910 pycom10g12010 pycom10g12080 pycom10g12100
rosa_chinensis	RchiOBHm_Chr3g0451631 RchiOBHm_Chr5g0026391 RchiOBHm_Chr7g0241711
rosa_laevigata	RLG00000004786 RLG00000004787 RLG00000029480
rosa_multiflora	Rmu_co8097864.1_g000001 Rmu_sc0001689.1_g000015 Rmu_sc0002354.1_g000038 Rmu_sc0003469.1_g000013 Rmu_sc0006326.1_g000044 Rmu_sc0038436.1_g000001 Rmu_sc0043107.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053220 Rroxscaffold_3G00218740 Rroxscaffold_3G00267480 Rroxscaffold_4G00317010 Rroxscaffold_6G00397670 Rroxscaffold_6G00397680
rosa_rugosa	Rorug01G0112600 Rorug05G0000700 Rorug06G0259600 Rorug07G0346700
rosa_samantha	Rh7AG085700
rosa_wichuraiana	Rw1G011340 Rw7G007550 Rw7G042350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	414, 620, 677
AatII	GACGTC	1 cut(s)	51
Acc16I	TGCGCA	1 cut(s)	422
Acc36I	ACCTGC	3 cut(s)	414, 620, 677
AccII	CGCG	2 cut(s)	159, 764
AciI	CCGC	4 cut(s)	79, 159, 541, 764
AclWI	GGATC	1 cut(s)	326
AcuI	CTGAAG	2 cut(s)	609, 666
AcyI	GRCGYC	1 cut(s)	48
AdeI	CACNNNGTG	1 cut(s)	252
AfaI	GTAC	1 cut(s)	393
AfiI	CCNNNNNNNGG	4 cut(s)	304, 629, 686, 742
AgsI	TTSAA	6 cut(s)	173, 400, 586, 643, 700, 756
AjnI	CCWGG	2 cut(s)	28, 92
AluBI	AGCT	2 cut(s)	449, 461
AluI	AGCT	2 cut(s)	449, 461
AlwI	GGATC	1 cut(s)	326
AoxI	GGCC	5 cut(s)	68, 484, 609, 666, 723
ApaI	GGGCCC	3 cut(s)	613, 670, 727
AspLEI	GCGC	2 cut(s)	159, 423
AspS9I	GGNCC	8 cut(s)	68, 485, 609, 610, 666, 667, 723, 724
AsuHPI	GGTGA	3 cut(s)	644, 701, 757
BaeGI	GKGCMC	3 cut(s)	613, 670, 727
BanII	GRGCYC	3 cut(s)	613, 670, 727
BccI	CCATC	1 cut(s)	343
BciT130I	CCWGG	2 cut(s)	30, 94
BfuAI	ACCTGC	3 cut(s)	414, 620, 677
BisI	GCNGC	1 cut(s)	541
BlsI	GCNGC	1 cut(s)	542
Bme1390I	CCNGG	2 cut(s)	30, 94
BmgT120I	GGNCC	8 cut(s)	68, 485, 609, 610, 666, 667, 723, 724
BmiI	GGNNCC	4 cut(s)	487, 611, 668, 725
BmrFI	CCNGG	2 cut(s)	30, 94
BmsI	GCATC	4 cut(s)	209, 284, 361, 424
BsaHI	GRCGYC	1 cut(s)	48
Bsc4I	CCNNNNNNNGG	4 cut(s)	304, 629, 686, 742
Bse3DI	GCAATG	3 cut(s)	549, 673, 730
BseBI	CCWGG	2 cut(s)	30, 94
BseGI	GGATG	3 cut(s)	200, 265, 439
BseLI	CCNNNNNNNGG	4 cut(s)	304, 629, 686, 742
BseMI	GCAATG	3 cut(s)	549, 673, 730
BseSI	GKGCMC	3 cut(s)	613, 670, 727
BseYI	CCCAGC	1 cut(s)	461
BsgI	GTGCAG	1 cut(s)	9
Bsh1236I	CGCG	2 cut(s)	159, 764
BshFI	GGCC	5 cut(s)	70, 486, 611, 668, 725
BsiSI	CCGG	1 cut(s)	71
BslI	CCNNNNNNNGG	4 cut(s)	304, 629, 686, 742
BsmI	GAATGC	1 cut(s)	287
BsnI	GGCC	5 cut(s)	70, 486, 611, 668, 725
Bsp120I	GGGCCC	3 cut(s)	609, 666, 723
Bsp1286I	GDGCHC	3 cut(s)	613, 670, 727
Bsp143I	GATC	2 cut(s)	331, 349
BspACI	CCGC	4 cut(s)	79, 159, 541, 764
BspANI	GGCC	5 cut(s)	70, 486, 611, 668, 725
BspFNI	CGCG	2 cut(s)	159, 764
BspHI	TCATGA	1 cut(s)	103
BspLI	GGNNCC	4 cut(s)	487, 611, 668, 725
BspMI	ACCTGC	3 cut(s)	414, 620, 677
BspPI	GGATC	1 cut(s)	326
BsrDI	GCAATG	3 cut(s)	549, 673, 730
BssMI	GATC	2 cut(s)	331, 349
BssNI	GRCGYC	1 cut(s)	48
Bst2UI	CCWGG	2 cut(s)	30, 94
BstACI	GRCGYC	1 cut(s)	48
BstDEI	CTNAG	1 cut(s)	56
BstENI	CCTNNNNNAGG	2 cut(s)	627, 684
BstF5I	GGATG	3 cut(s)	200, 265, 439
BstFNI	CGCG	2 cut(s)	159, 764
BstHHI	GCGC	2 cut(s)	159, 423
BstKTI	GATC	2 cut(s)	334, 352
BstMBI	GATC	2 cut(s)	331, 349
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 483, 546
BstNI	CCWGG	2 cut(s)	30, 94
BstSCI	CCNGG	2 cut(s)	28, 92
BstSLI	GKGCMC	3 cut(s)	613, 670, 727
BstUI	CGCG	2 cut(s)	159, 764
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BsuRI	GGCC	5 cut(s)	70, 486, 611, 668, 725
BtsCI	GGATG	3 cut(s)	200, 265, 439
BtsI	GCAGTG	1 cut(s)	616
BtsIMutI	CAGTG	1 cut(s)	616
BveI	ACCTGC	3 cut(s)	414, 620, 677
CciI	TCATGA	1 cut(s)	103
CfoI	GCGC	2 cut(s)	159, 423
Cfr13I	GGNCC	8 cut(s)	68, 485, 609, 610, 666, 667, 723, 724
Csp6I	GTAC	1 cut(s)	392
CspCI	CAANNNNNGTGG	6 cut(s)	574, 609, 631, 666, 688, 723
CviAII	CATG	2 cut(s)	104, 386
CviQI	GTAC	1 cut(s)	392
DdeI	CTNAG	1 cut(s)	56
DpnI	GATC	2 cut(s)	333, 351
DpnII	GATC	2 cut(s)	331, 349
DraIII	CACNNNGTG	1 cut(s)	252
Eco24I	GRGCYC	3 cut(s)	613, 670, 727
Eco57I	CTGAAG	2 cut(s)	609, 666
EcoNI	CCTNNNNNAGG	2 cut(s)	627, 684
EcoRII	CCWGG	2 cut(s)	28, 92
EcoT22I	ATGCAT	2 cut(s)	376, 551
EcoT38I	GRGCYC	3 cut(s)	613, 670, 727
FaeI	CATG	2 cut(s)	107, 389
FaiI	YATR	9 cut(s)	45, 105, 140, 237, 273, 275, 366, 387, 599
FatI	CATG	2 cut(s)	103, 385
FauI	CCCGC	2 cut(s)	86, 757
Fnu4HI	GCNGC	1 cut(s)	541
FokI	GGATG	3 cut(s)	187, 272, 446
FriOI	GRGCYC	3 cut(s)	613, 670, 727
Fsp4HI	GCNGC	1 cut(s)	541
FspI	TGCGCA	1 cut(s)	422
GlaI	GCGC	2 cut(s)	158, 422
GluI	GCNGC	1 cut(s)	541
GsaI	CCCAGC	1 cut(s)	465
HaeIII	GGCC	5 cut(s)	70, 486, 611, 668, 725
HapII	CCGG	1 cut(s)	71
HhaI	GCGC	2 cut(s)	159, 423
Hin1I	GRCGYC	1 cut(s)	48
Hin1II	CATG	2 cut(s)	107, 389
Hin6I	GCGC	2 cut(s)	157, 421
HinP1I	GCGC	2 cut(s)	157, 421
HindIII	AAGCTT	1 cut(s)	447
HpaII	CCGG	1 cut(s)	71
HphI	GGTGA	3 cut(s)	644, 701, 757
Hpy188I	TCNGA	1 cut(s)	354
Hpy188III	TCNNGA	1 cut(s)	104
HpyAV	CCTTC	5 cut(s)	145, 191, 633, 690, 747
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	5 cut(s)	26, 285, 368, 374, 549
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 483, 546
HpyF3I	CTNAG	1 cut(s)	56
HpySE526I	ACGT	1 cut(s)	48
Hsp92I	GRCGYC	1 cut(s)	48
Hsp92II	CATG	2 cut(s)	107, 389
HspAI	GCGC	2 cut(s)	157, 421
Kzo9I	GATC	2 cut(s)	331, 349
LweI	GCATC	4 cut(s)	209, 284, 361, 424
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	225
MalI	GATC	2 cut(s)	333, 351
MboI	GATC	2 cut(s)	331, 349
MboII	GAAGA	3 cut(s)	12, 234, 584
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	3 cut(s)	613, 670, 727
MluCI	AATT	3 cut(s)	150, 168, 497
MmeI	TCCRAC	1 cut(s)	547
MnlI	CCTC	6 cut(s)	59, 157, 190, 348, 423, 499
Mph1103I	ATGCAT	2 cut(s)	376, 551
MseI	TTAA	1 cut(s)	440
MspI	CCGG	1 cut(s)	71
MspR9I	CCNGG	2 cut(s)	30, 94
Mva1269I	GAATGC	1 cut(s)	287
MvaI	CCWGG	2 cut(s)	30, 94
MvnI	CGCG	2 cut(s)	159, 764
MwoI	GCNNNNNNNGC	3 cut(s)	197, 483, 546
NdeII	GATC	2 cut(s)	331, 349
NlaIII	CATG	2 cut(s)	107, 389
NlaIV	GGNNCC	4 cut(s)	487, 611, 668, 725
NmuCI	GTSAC	1 cut(s)	225
NsbI	TGCGCA	1 cut(s)	422
NsiI	ATGCAT	2 cut(s)	376, 551
PagI	TCATGA	1 cut(s)	103
PaqCI	CACCTGC	3 cut(s)	414, 620, 677
PctI	GAATGC	1 cut(s)	287
PkrI	GCNGC	1 cut(s)	542
Psp6I	CCWGG	2 cut(s)	28, 92
PspFI	CCCAGC	1 cut(s)	461
PspGI	CCWGG	2 cut(s)	28, 92
PspN4I	GGNNCC	4 cut(s)	487, 611, 668, 725
PspOMI	GGGCCC	3 cut(s)	609, 666, 723
PspPI	GGNCC	8 cut(s)	68, 485, 609, 610, 666, 667, 723, 724
PsuI	RGATCY	1 cut(s)	331
RsaI	GTAC	1 cut(s)	393
RsaNI	GTAC	1 cut(s)	392
SaqAI	TTAA	1 cut(s)	440
SatI	GCNGC	1 cut(s)	541
Sau3AI	GATC	2 cut(s)	331, 349
Sau96I	GGNCC	8 cut(s)	68, 485, 609, 610, 666, 667, 723, 724
ScrFI	CCNGG	2 cut(s)	30, 94
SduI	GDGCHC	3 cut(s)	613, 670, 727
SetI	ASST	9 cut(s)	31, 51, 137, 420, 428, 451, 463, 634, 691
SfaNI	GCATC	4 cut(s)	209, 284, 361, 424
Sse9I	AATT	3 cut(s)	150, 168, 497
SsiI	CCGC	4 cut(s)	79, 159, 541, 764
StyD4I	CCNGG	2 cut(s)	28, 92
TaiI	ACGT	1 cut(s)	51
TasI	AATT	3 cut(s)	150, 168, 497
TatI	WGTACW	1 cut(s)	391
TauI	GCSGC	1 cut(s)	543
Tru1I	TTAA	1 cut(s)	440
Tru9I	TTAA	1 cut(s)	440
TscAI	CASTG	1 cut(s)	623
TseFI	GTSAC	1 cut(s)	225
Tsp45I	GTSAC	1 cut(s)	225
TspDTI	ATGAA	4 cut(s)	92, 127, 276, 402
TspGWI	ACGGA	1 cut(s)	202
TspRI	CASTG	1 cut(s)	623
XagI	CCTNNNNNAGG	2 cut(s)	627, 684
XcmI	CCANNNNNNNNNTGG	1 cut(s)	253
ZraI	GACGTC	1 cut(s)	49
Zsp2I	ATGCAT	2 cut(s)	376, 551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.