Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006326.1

Orthogroup ID

OG0002558

Physical Location & Seq

Genomic Coordinates Reverse (-)

148093 .. 154782

Gene Structure 6690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006326.1_g000044.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

atgccgcggtggtttgagctcaaccttgatcgccgcaaagccatttcgctgaatgaggccgtcagagccatggctcaagtagccttaactgacatagagctcgtcaaccgcccagttcaccagcctgaagctgcaacccagatcgatagaggcccaatagcccactacccaaacccttcgcctcccacccccagatcaaccggttctggccttgtagaagatgcggccttcgcccatcaccgctccagtggccgtccacgccccgacaagctcttcacgcctccacagaaaccagaccggcgctactcaccgccccctgcaattcgatgccctatgatcaaagatcgaatcgacgccgcctccctgctgcacgaaaccctaaggttcggtatattgagctctgaaatttcgggagcttctcgtaatacactttgcactgttctcgacttctcgtacattgatggcgactcagatctcggcggtgttcctccgacgacagctgtctttgagtatgatgtctttcttagttttagagggccggacacccgcaagacttttaccaggcaacttcataaggctttagtcaggaaacaaattaataccttcatagatgacgaaattgagcgtggagaggaaattgaaccaacccttcgccatgcaatagaggcatcaaaccttttagtagtcattttgtcacaaggctatgcttcttccacatcgtgcttggatgaacttgcttatatatttgaatgcaagaaaagatgccaacaatcggttttacccattttttatcgggtagatccatcacaagtaagagatcagagggagagttatgcagatgcatttgttcagcatgaagtacgtttcaagggcacgccagacaaggtgcgcaagtggagggatgctttaatcaaagcttccaaaatagctggccccgattacaaattagttgaggaagttgtgagagatattgtgtggaagttgagccgcaaatgcattgccccacaagatgtcgcctgcttgcttgttgctgttgaaggttgtggaggccttgaactcataggtctggttgaggcagatgcaacttgggttgggttggagcttgtaggtctagttgtagattgtgccggccttgatgtagattgtgcaggctttgatgtggatggggcaaacctatttgctgccagctttgcagctttggcagcagtaaactttctctacacaaataaccaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

411

Amino Acids

45.55

Weight (kDa)

5.72

Isoelectric Point (pI)

45.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20142
fragaria_vesca	FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730
malus_domestica	MD05G1140000.v1.1
prunus_persica	Prupe.1G120200_v2.0.a1
pyrus_communis	pycom03g08420 pycom04g02910 pycom10g12010 pycom10g12080 pycom10g12100
rosa_chinensis	RchiOBHm_Chr3g0451631 RchiOBHm_Chr5g0026391 RchiOBHm_Chr7g0241711
rosa_laevigata	RLG00000004786 RLG00000004787 RLG00000029480
rosa_multiflora	Rmu_co8097864.1_g000001 Rmu_sc0001689.1_g000015 Rmu_sc0002354.1_g000038 Rmu_sc0003469.1_g000013 Rmu_sc0006326.1_g000044 Rmu_sc0038436.1_g000001 Rmu_sc0043107.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053220 Rroxscaffold_3G00218740 Rroxscaffold_3G00267480 Rroxscaffold_4G00317010 Rroxscaffold_6G00397670 Rroxscaffold_6G00397680
rosa_rugosa	Rorug01G0112600 Rorug05G0000700 Rorug06G0259600 Rorug07G0346700
rosa_samantha	Rh7AG085700
rosa_wichuraiana	Rw1G011340 Rw7G007550 Rw7G042350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	890
AccBSI	CCGCTC	1 cut(s)	243
AccII	CGCG	1 cut(s)	7
AclWI	GGATC	1 cut(s)	794
AcoI	YGGCCR	1 cut(s)	250
AcsI	RAATTY	1 cut(s)	405
AcuI	CTGAAG	1 cut(s)	147
AcyI	GRCGYC	1 cut(s)	354
AdeI	CACNNNGTG	1 cut(s)	720
AfaI	GTAC	2 cut(s)	455, 861
AfiI	CCNNNNNNNGG	1 cut(s)	772
AgeI	ACCGGT	1 cut(s)	200
AgsI	TTSAA	5 cut(s)	641, 749, 868, 1037, 1055
AjnI	CCWGG	1 cut(s)	560
Alw21I	GWGCWC	3 cut(s)	21, 102, 401
AlwI	GGATC	1 cut(s)	794
AoxI	GGCC	9 cut(s)	57, 151, 208, 225, 250, 536, 931, 1048, 1129
ApeKI	GCWGC	5 cut(s)	131, 367, 1181, 1193, 1202
ApoI	RAATTY	1 cut(s)	405
AseI	ATTAAT	1 cut(s)	597
AsiGI	ACCGGT	1 cut(s)	200
AspLEI	GCGC	2 cut(s)	303, 891
AspS9I	GGNCC	3 cut(s)	152, 536, 932
AsuHPI	GGTGA	3 cut(s)	110, 230, 300
AxyI	CCTNAGG	1 cut(s)	380
BaeGI	GKGCMC	1 cut(s)	875
BanII	GRGCYC	3 cut(s)	21, 102, 401
Bbv12I	GWGCWC	3 cut(s)	21, 102, 401
BbvI	GCAGC	5 cut(s)	118, 354, 1168, 1205, 1214
BccI	CCATC	4 cut(s)	243, 455, 811, 1157
BceAI	ACGGC	2 cut(s)	44, 237
BcgI	CGANNNNNNTGC	2 cut(s)	424, 458
BciT130I	CCWGG	1 cut(s)	562
BclI	TGATCA	1 cut(s)	336
BfaI	CTAG	1 cut(s)	1112
BfoI	RGCGCY	1 cut(s)	304
BglII	AGATCT	1 cut(s)	472
Bme1390I	CCNGG	1 cut(s)	562
BmgT120I	GGNCC	3 cut(s)	152, 536, 932
BmiI	GGNNCC	1 cut(s)	934
BmrFI	CCNGG	1 cut(s)	562
BmrI	ACTGGG	1 cut(s)	107
BmsI	GCATC	7 cut(s)	211, 317, 677, 752, 829, 892, 1069
BmuI	ACTGGG	1 cut(s)	107
BoxI	GACNNNNGTC	1 cut(s)	500
BpmI	CTGGAG	1 cut(s)	229
BpuEI	CTTGAG	1 cut(s)	60
Bsa29I	ATCGAT	1 cut(s)	144
BsaHI	GRCGYC	1 cut(s)	354
BsaJI	CCNNGG	2 cut(s)	5, 69
BsaWI	WCCGGW	1 cut(s)	200
BsaXI	ACNNNNNCTCC	2 cut(s)	344, 374
Bsc4I	CCNNNNNNNGG	1 cut(s)	772
Bse118I	RCCGGY	3 cut(s)	200, 297, 1127
Bse1I	ACTGG	2 cut(s)	113, 246
Bse21I	CCTNAGG	1 cut(s)	380
Bse3DI	GCAATG	1 cut(s)	996
BseBI	CCWGG	1 cut(s)	562
BseCI	ATCGAT	1 cut(s)	144
BseDI	CCNNGG	2 cut(s)	5, 69
BseGI	GGATG	3 cut(s)	733, 907, 1168
BseLI	CCNNNNNNNGG	1 cut(s)	772
BseMI	GCAATG	1 cut(s)	996
BseMII	CTCAG	1 cut(s)	483
BseNI	ACTGG	2 cut(s)	113, 246
BseSI	GKGCMC	1 cut(s)	875
BseXI	GCAGC	5 cut(s)	118, 354, 1168, 1205, 1214
BsgI	GTGCAG	2 cut(s)	353, 1167
Bsh1236I	CGCG	1 cut(s)	7
BshFI	GGCC	9 cut(s)	59, 153, 210, 227, 252, 538, 933, 1050, 1131
BshTI	ACCGGT	1 cut(s)	200
BshVI	ATCGAT	1 cut(s)	144
BsiHKAI	GWGCWC	3 cut(s)	21, 102, 401
BsiSI	CCGG	4 cut(s)	201, 298, 539, 1128
BslI	CCNNNNNNNGG	1 cut(s)	772
BsmI	GAATGC	1 cut(s)	755
BsnI	GGCC	9 cut(s)	59, 153, 210, 227, 252, 538, 933, 1050, 1131
Bsp1286I	GDGCHC	4 cut(s)	21, 102, 401, 875
Bsp143I	GATC	8 cut(s)	28, 141, 194, 336, 343, 472, 799, 817
Bsp19I	CCATGG	1 cut(s)	69
BspANI	GGCC	9 cut(s)	59, 153, 210, 227, 252, 538, 933, 1050, 1131
BspCNI	CTCAG	1 cut(s)	482
BspDI	ATCGAT	1 cut(s)	144
BspFNI	CGCG	1 cut(s)	7
BspLI	GGNNCC	1 cut(s)	934
BspPI	GGATC	1 cut(s)	794
BspQI	GCTCTTC	1 cut(s)	278
BsrBI	CCGCTC	1 cut(s)	243
BsrDI	GCAATG	1 cut(s)	996
BsrFI	RCCGGY	3 cut(s)	200, 297, 1127
BsrI	ACTGG	2 cut(s)	113, 246
BssAI	RCCGGY	3 cut(s)	200, 297, 1127
BssECI	CCNNGG	2 cut(s)	5, 69
BssMI	GATC	8 cut(s)	28, 141, 194, 336, 343, 472, 799, 817
BssNI	GRCGYC	1 cut(s)	354
BssT1I	CCWWGG	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	562
Bst4CI	ACNGT	1 cut(s)	439
Bst6I	CTCTTC	1 cut(s)	278
BstACI	GRCGYC	1 cut(s)	354
BstC8I	GCNNGC	7 cut(s)	875, 931, 1018, 1022, 1129, 1150, 1186
BstDEI	CTNAG	3 cut(s)	380, 469, 524
BstDSI	CCRYGG	2 cut(s)	5, 69
BstF5I	GGATG	3 cut(s)	733, 907, 1168
BstFNI	CGCG	1 cut(s)	7
BstH2I	RGCGCY	1 cut(s)	304
BstHHI	GCGC	2 cut(s)	303, 891
BstKTI	GATC	8 cut(s)	31, 144, 197, 339, 346, 475, 802, 820
BstMBI	GATC	8 cut(s)	28, 141, 194, 336, 343, 472, 799, 817
BstNI	CCWGG	1 cut(s)	562
BstPAI	GACNNNNGTC	1 cut(s)	500
BstSCI	CCNGG	1 cut(s)	560
BstSLI	GKGCMC	1 cut(s)	875
BstUI	CGCG	1 cut(s)	7
BstV1I	GCAGC	5 cut(s)	118, 354, 1168, 1205, 1214
BstX2I	RGATCY	2 cut(s)	472, 799
BstYI	RGATCY	2 cut(s)	472, 799
Bsu15I	ATCGAT	1 cut(s)	144
Bsu36I	CCTNAGG	1 cut(s)	380
BsuRI	GGCC	9 cut(s)	59, 153, 210, 227, 252, 538, 933, 1050, 1131
BsuTUI	ATCGAT	1 cut(s)	144
BtgI	CCRYGG	2 cut(s)	5, 69
BtsCI	GGATG	3 cut(s)	733, 907, 1168
BtsIMutI	CAGTG	2 cut(s)	253, 435
Cac8I	GCNNGC	7 cut(s)	875, 931, 1018, 1022, 1129, 1150, 1186
CfoI	GCGC	2 cut(s)	303, 891
Cfr10I	RCCGGY	3 cut(s)	200, 297, 1127
Cfr13I	GGNCC	3 cut(s)	152, 536, 932
Cfr42I	CCGCGG	1 cut(s)	8
ClaI	ATCGAT	1 cut(s)	144
CseI	GACGC	1 cut(s)	362
Csp6I	GTAC	2 cut(s)	454, 860
CspAI	ACCGGT	1 cut(s)	200
CviAII	CATG	3 cut(s)	70, 656, 854
CviQI	GTAC	2 cut(s)	454, 860
DdeI	CTNAG	3 cut(s)	380, 469, 524
DpnI	GATC	8 cut(s)	30, 143, 196, 338, 345, 474, 801, 819
DpnII	GATC	8 cut(s)	28, 141, 194, 336, 343, 472, 799, 817
DraIII	CACNNNGTG	1 cut(s)	720
EaeI	YGGCCR	1 cut(s)	250
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
Ecl136II	GAGCTC	3 cut(s)	19, 100, 399
Eco130I	CCWWGG	1 cut(s)	69
Eco147I	AGGCCT	1 cut(s)	1050
Eco24I	GRGCYC	3 cut(s)	21, 102, 401
Eco53kI	GAGCTC	3 cut(s)	19, 100, 399
Eco57I	CTGAAG	1 cut(s)	147
Eco81I	CCTNAGG	1 cut(s)	380
EcoICRI	GAGCTC	3 cut(s)	19, 100, 399
EcoRII	CCWGG	1 cut(s)	560
EcoT14I	CCWWGG	1 cut(s)	69
EcoT22I	ATGCAT	2 cut(s)	844, 998
EcoT38I	GRGCYC	3 cut(s)	21, 102, 401
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	3 cut(s)	73, 659, 857
FatI	CATG	3 cut(s)	69, 655, 853
FauI	CCCGC	1 cut(s)	554
FbaI	TGATCA	1 cut(s)	336
FokI	GGATG	3 cut(s)	740, 914, 1175
FriOI	GRGCYC	3 cut(s)	21, 102, 401
FspBI	CTAG	1 cut(s)	1112
FspI	TGCGCA	1 cut(s)	890
GlaI	GCGC	2 cut(s)	302, 890
GsuI	CTGGAG	1 cut(s)	229
HaeII	RGCGCY	1 cut(s)	304
HaeIII	GGCC	9 cut(s)	59, 153, 210, 227, 252, 538, 933, 1050, 1131
HapII	CCGG	4 cut(s)	201, 298, 539, 1128
HgaI	GACGC	1 cut(s)	362
HhaI	GCGC	2 cut(s)	303, 891
Hin1I	GRCGYC	1 cut(s)	354
Hin1II	CATG	3 cut(s)	73, 659, 857
Hin6I	GCGC	2 cut(s)	301, 889
HinP1I	GCGC	2 cut(s)	301, 889
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HindIII	AAGCTT	1 cut(s)	915
HinfI	GANTC	2 cut(s)	348, 467
HpaII	CCGG	4 cut(s)	201, 298, 539, 1128
HphI	GGTGA	3 cut(s)	110, 230, 300
Hpy166II	GTNNAC	4 cut(s)	106, 118, 257, 1210
Hpy188I	TCNGA	5 cut(s)	65, 403, 472, 492, 822
Hpy188III	TCNNGA	3 cut(s)	411, 443, 586
Hpy8I	GTNNAC	4 cut(s)	106, 118, 257, 1210
Hpy99I	CGWCG	2 cut(s)	356, 496
HpyAV	CCTTC	5 cut(s)	186, 238, 613, 659, 1031
HpyCH4III	ACNGT	1 cut(s)	439
HpyCH4IV	ACGT	1 cut(s)	862
HpyF3I	CTNAG	3 cut(s)	380, 469, 524
HpySE526I	ACGT	1 cut(s)	862
Hsp92I	GRCGYC	1 cut(s)	354
Hsp92II	CATG	3 cut(s)	73, 659, 857
HspAI	GCGC	2 cut(s)	301, 889
KroI	GCCGGC	1 cut(s)	1127
KroNI	GCCGGC	1 cut(s)	1129
Ksp22I	TGATCA	1 cut(s)	336
KspI	CCGCGG	1 cut(s)	8
Kzo9I	GATC	8 cut(s)	28, 141, 194, 336, 343, 472, 799, 817
LguI	GCTCTTC	1 cut(s)	278
LmnI	GCTCC	3 cut(s)	248, 413, 1099
Lsp1109I	GCAGC	5 cut(s)	118, 354, 1168, 1205, 1214
LweI	GCATC	7 cut(s)	211, 317, 677, 752, 829, 892, 1069
MaeI	CTAG	1 cut(s)	1112
MaeII	ACGT	1 cut(s)	862
MaeIII	GTNAC	1 cut(s)	693
MalI	GATC	8 cut(s)	30, 143, 196, 338, 345, 474, 801, 819
MbiI	CCGCTC	1 cut(s)	243
MboI	GATC	8 cut(s)	28, 141, 194, 336, 343, 472, 799, 817
MboII	GAAGA	3 cut(s)	230, 265, 702
MflI	RGATCY	2 cut(s)	472, 799
MhlI	GDGCHC	4 cut(s)	21, 102, 401, 875
MluCI	AATT	6 cut(s)	321, 405, 594, 618, 636, 944
MlyI	GAGTC	1 cut(s)	461
MmeI	TCCRAC	2 cut(s)	515, 1077
Mph1103I	ATGCAT	2 cut(s)	844, 998
MroNI	GCCGGC	1 cut(s)	1127
MseI	TTAA	3 cut(s)	86, 597, 908
MspA1I	CMGCKG	2 cut(s)	7, 500
MspI	CCGG	4 cut(s)	201, 298, 539, 1128
MspR9I	CCNGG	1 cut(s)	562
Mva1269I	GAATGC	1 cut(s)	755
MvaI	CCWGG	1 cut(s)	562
MvnI	CGCG	1 cut(s)	7
NaeI	GCCGGC	1 cut(s)	1129
NcoI	CCATGG	1 cut(s)	69
NdeII	GATC	8 cut(s)	28, 141, 194, 336, 343, 472, 799, 817
NgoMIV	GCCGGC	1 cut(s)	1127
NlaIII	CATG	3 cut(s)	73, 659, 857
NlaIV	GGNNCC	1 cut(s)	934
NmeAIII	GCCGAG	1 cut(s)	456
NmuCI	GTSAC	1 cut(s)	693
NsbI	TGCGCA	1 cut(s)	890
NsiI	ATGCAT	2 cut(s)	844, 998
PceI	AGGCCT	1 cut(s)	1050
PciSI	GCTCTTC	1 cut(s)	278
PctI	GAATGC	1 cut(s)	755
PdiI	GCCGGC	1 cut(s)	1129
PfeI	GAWTC	1 cut(s)	348
PinAI	ACCGGT	1 cut(s)	200
PleI	GAGTC	1 cut(s)	461
PpsI	GAGTC	1 cut(s)	461
PshAI	GACNNNNGTC	1 cut(s)	500
PshBI	ATTAAT	1 cut(s)	597
Psp124BI	GAGCTC	3 cut(s)	21, 102, 401
Psp6I	CCWGG	1 cut(s)	560
PspGI	CCWGG	1 cut(s)	560
PspN4I	GGNNCC	1 cut(s)	934
PspPI	GGNCC	3 cut(s)	152, 536, 932
PsuI	RGATCY	2 cut(s)	472, 799
PvuII	CAGCTG	1 cut(s)	500
RsaI	GTAC	2 cut(s)	455, 861
RsaNI	GTAC	2 cut(s)	454, 860
SacI	GAGCTC	3 cut(s)	21, 102, 401
SacII	CCGCGG	1 cut(s)	8
SapI	GCTCTTC	1 cut(s)	278
SaqAI	TTAA	3 cut(s)	86, 597, 908
Sau3AI	GATC	8 cut(s)	28, 141, 194, 336, 343, 472, 799, 817
Sau96I	GGNCC	3 cut(s)	152, 536, 932
SchI	GAGTC	1 cut(s)	461
ScrFI	CCNGG	1 cut(s)	562
SduI	GDGCHC	4 cut(s)	21, 102, 401, 875
SfaNI	GCATC	7 cut(s)	211, 317, 677, 752, 829, 892, 1069
Sfr303I	CCGCGG	1 cut(s)	8
SgrBI	CCGCGG	1 cut(s)	8
SmlI	CTYRAG	1 cut(s)	75
SmoI	CTYRAG	1 cut(s)	75
Sse9I	AATT	6 cut(s)	321, 405, 594, 618, 636, 944
SseBI	AGGCCT	1 cut(s)	1050
SspMI	CTAG	1 cut(s)	1112
SstI	GAGCTC	3 cut(s)	21, 102, 401
StuI	AGGCCT	1 cut(s)	1050
StyD4I	CCNGG	1 cut(s)	560
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	1 cut(s)	439
TaiI	ACGT	1 cut(s)	865
TaqI	TCGA	5 cut(s)	144, 325, 346, 351, 444
TasI	AATT	6 cut(s)	321, 405, 594, 618, 636, 944
TauI	GCSGC	5 cut(s)	7, 36, 227, 359, 990
TfiI	GAWTC	1 cut(s)	348
Tru1I	TTAA	3 cut(s)	86, 597, 908
Tru9I	TTAA	3 cut(s)	86, 597, 908
TscAI	CASTG	2 cut(s)	253, 442
TseFI	GTSAC	1 cut(s)	693
TseI	GCWGC	5 cut(s)	131, 367, 1181, 1193, 1202
Tsp45I	GTSAC	1 cut(s)	693
TspDTI	ATGAA	4 cut(s)	560, 595, 744, 870
TspRI	CASTG	2 cut(s)	253, 442
VspI	ATTAAT	1 cut(s)	597
XapI	RAATTY	1 cut(s)	405
XcmI	CCANNNNNNNNNTGG	1 cut(s)	721
XspI	CTAG	1 cut(s)	1112
Zsp2I	ATGCAT	2 cut(s)	844, 998

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.