Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002558

Physical Location & Seq

Genomic Coordinates Reverse (-)

6495031 .. 6502276

Gene Structure 7246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG085700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGTCCACCCAAAACTTATACACCTTCAACTGCAAATCAGCTTTTGAAAAGGACTACCATCCTTCTCATGGTGATGCATGGCATAAAAGTTTTTTCCGTTCTTTGGCATATATGCACTGCACTAGATTCATAATTACCTACTTCCCACCTAGGTATAATCATGCCCTTACCGTCTTGAAATACAACGAGGACAAGGTCCCCGGATGGAGGATAGCTCTTACACAAGTAGCAAATTTGTCTGGATGGACTTATGTGGACGGGTATGAATCTGATTTTATTGAGAAAATTGTTAAAGAGATATTAGATGTGGTTGGCCTCGACAACTATAAGAAGAAAGAAGATGTGGCCAGCCTCAACCACCAAAACAAAAAAACAGATTTAACCGGTCTCAATGACCAAACGAAGAACAACAATTGGGCCAACGTTTACAATCAGACTTTGCTTAAGCTCCAGAAGAATATAGATGGGGCAGACGTCTACAACAAGACCTTCCTTCGACTCCAAAAGGAATCAGAGGAGGCGGATGTCTACAACAAGACCTTCCTTCGGCTCCAGAAGGAATCAGAAGAGGCAGACGTCTACAACAAGACTTTCCTTCGGCTCCAGAAGGAATCACAGGATGCGGATGTCTACAACAAGACATTACTTCGGCTCCAGAAGGAATCAGAGGAGGCGGACTTATACATGAAACTGTTTCCAGTTTTATCTATTCTTTTTCATAATAGGATTGAGTATGGTATTAAAAATAAAACTCAATATATCATTTTGAAATTTCCGTGCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC RVT_2 TIR

Protein Analysis

261

Amino Acids

30.84

Weight (kDa)

8.2

Isoelectric Point (pI)

51.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20142
fragaria_vesca	FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730
malus_domestica	MD05G1140000.v1.1
prunus_persica	Prupe.1G120200_v2.0.a1
pyrus_communis	pycom03g08420 pycom04g02910 pycom10g12010 pycom10g12080 pycom10g12100
rosa_chinensis	RchiOBHm_Chr3g0451631 RchiOBHm_Chr5g0026391 RchiOBHm_Chr7g0241711
rosa_laevigata	RLG00000004786 RLG00000004787 RLG00000029480
rosa_multiflora	Rmu_co8097864.1_g000001 Rmu_sc0001689.1_g000015 Rmu_sc0002354.1_g000038 Rmu_sc0003469.1_g000013 Rmu_sc0006326.1_g000044 Rmu_sc0038436.1_g000001 Rmu_sc0043107.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053220 Rroxscaffold_3G00218740 Rroxscaffold_3G00267480 Rroxscaffold_4G00317010 Rroxscaffold_6G00397670 Rroxscaffold_6G00397680
rosa_rugosa	Rorug01G0112600 Rorug05G0000700 Rorug06G0259600 Rorug07G0346700
rosa_samantha	Rh7AG085700
rosa_wichuraiana	Rw1G011340 Rw7G007550 Rw7G042350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	477, 579
AccI	GTMKAC	4 cut(s)	477, 528, 579, 630
AciI	CCGC	3 cut(s)	521, 623, 674
AclI	AACGTT	1 cut(s)	423
AcoI	YGGCCR	1 cut(s)	345
AcsI	RAATTY	2 cut(s)	232, 770
AcyI	GRCGYC	2 cut(s)	474, 576
AfiI	CCNNNNNNNGG	4 cut(s)	68, 103, 207, 546
AflII	CTTAAG	1 cut(s)	443
AgeI	ACCGGT	1 cut(s)	383
AgsI	TTSAA	4 cut(s)	28, 47, 178, 769
AluBI	AGCT	3 cut(s)	41, 215, 448
AluI	AGCT	3 cut(s)	41, 215, 448
Alw26I	GTCTC	1 cut(s)	392
AoxI	GGCC	3 cut(s)	313, 345, 417
ApoI	RAATTY	2 cut(s)	232, 770
AsiGI	ACCGGT	1 cut(s)	383
AspA2I	CCTAGG	1 cut(s)	149
AspS9I	GGNCC	2 cut(s)	196, 417
AsuC2I	CCSGG	1 cut(s)	201
AsuHPI	GGTGA	1 cut(s)	83
AvaII	GGWCC	1 cut(s)	196
AvrII	CCTAGG	1 cut(s)	149
BalI	TGGCCA	1 cut(s)	347
BccI	CCATC	4 cut(s)	66, 198, 237, 458
BcnI	CCSGG	1 cut(s)	201
BcoDI	GTCTC	1 cut(s)	392
BfaI	CTAG	2 cut(s)	123, 150
BfrI	CTTAAG	1 cut(s)	443
BlnI	CCTAGG	1 cut(s)	149
Bme1390I	CCNGG	1 cut(s)	201
Bme18I	GGWCC	1 cut(s)	196
BmgT120I	GGNCC	2 cut(s)	196, 417
BmiI	GGNNCC	4 cut(s)	198, 551, 602, 653
BmrFI	CCNGG	1 cut(s)	201
BmsI	GCATC	2 cut(s)	64, 610
BplI	GAGNNNNNCTC	2 cut(s)	199, 231
BpmI	CTGGAG	4 cut(s)	434, 536, 587, 638
BpuMI	CCSGG	1 cut(s)	201
BsaHI	GRCGYC	2 cut(s)	474, 576
BsaI	GGTCTC	1 cut(s)	392
BsaJI	CCNNGG	2 cut(s)	149, 199
BsaWI	WCCGGW	1 cut(s)	383
BsaXI	ACNNNNNCTCC	2 cut(s)	636, 666
Bsc4I	CCNNNNNNNGG	4 cut(s)	68, 103, 207, 546
Bse118I	RCCGGY	1 cut(s)	383
Bse1I	ACTGG	1 cut(s)	698
BseDI	CCNNGG	2 cut(s)	149, 199
BseGI	GGATG	6 cut(s)	58, 209, 248, 529, 625, 631
BseLI	CCNNNNNNNGG	4 cut(s)	68, 103, 207, 546
BseNI	ACTGG	1 cut(s)	698
BseRI	GAGGAG	2 cut(s)	530, 683
BsgI	GTGCAG	1 cut(s)	103
BshFI	GGCC	3 cut(s)	315, 347, 419
BshTI	ACCGGT	1 cut(s)	383
BsiSI	CCGG	2 cut(s)	201, 384
BslFI	GGGAC	1 cut(s)	182
BslI	CCNNNNNNNGG	4 cut(s)	68, 103, 207, 546
BsmAI	GTCTC	1 cut(s)	392
BsmFI	GGGAC	1 cut(s)	182
BsnI	GGCC	3 cut(s)	315, 347, 419
Bso31I	GGTCTC	1 cut(s)	392
BspACI	CCGC	3 cut(s)	521, 623, 674
BspANI	GGCC	3 cut(s)	315, 347, 419
BspLI	GGNNCC	4 cut(s)	198, 551, 602, 653
BspTI	CTTAAG	1 cut(s)	443
BspTNI	GGTCTC	1 cut(s)	392
BsrFI	RCCGGY	1 cut(s)	383
BsrI	ACTGG	1 cut(s)	698
BssAI	RCCGGY	1 cut(s)	383
BssECI	CCNNGG	2 cut(s)	149, 199
BssNI	GRCGYC	2 cut(s)	474, 576
BssT1I	CCWWGG	1 cut(s)	149
Bst4CI	ACNGT	2 cut(s)	172, 693
Bst6I	CTCTTC	1 cut(s)	561
BstACI	GRCGYC	2 cut(s)	474, 576
BstAFI	CTTAAG	1 cut(s)	443
BstC8I	GCNNGC	1 cut(s)	349
BstF5I	GGATG	6 cut(s)	58, 209, 248, 529, 625, 631
BstMAI	GTCTC	1 cut(s)	392
BstSCI	CCNGG	1 cut(s)	199
BsuRI	GGCC	3 cut(s)	315, 347, 419
BtsCI	GGATG	6 cut(s)	58, 209, 248, 529, 625, 631
BtsI	GCAGTG	1 cut(s)	115
BtsIMutI	CAGTG	1 cut(s)	115
Cac8I	GCNNGC	1 cut(s)	349
Cfr10I	RCCGGY	1 cut(s)	383
Cfr13I	GGNCC	2 cut(s)	196, 417
CspAI	ACCGGT	1 cut(s)	383
CviAII	CATG	4 cut(s)	68, 78, 161, 685
EaeI	YGGCCR	1 cut(s)	345
Eam1104I	CTCTTC	1 cut(s)	561
EarI	CTCTTC	1 cut(s)	561
EciI	GGCGGA	2 cut(s)	536, 689
Eco130I	CCWWGG	1 cut(s)	149
Eco31I	GGTCTC	1 cut(s)	392
Eco47I	GGWCC	1 cut(s)	196
EcoO109I	RGGNCCY	1 cut(s)	196
EcoT14I	CCWWGG	1 cut(s)	149
EcoT22I	ATGCAT	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	149
FaeI	CATG	4 cut(s)	71, 81, 164, 688
FaqI	GGGAC	1 cut(s)	182
FatI	CATG	4 cut(s)	67, 77, 160, 684
FblI	GTMKAC	4 cut(s)	477, 528, 579, 630
FokI	GGATG	6 cut(s)	45, 216, 255, 536, 632, 638
FspBI	CTAG	2 cut(s)	123, 150
GsuI	CTGGAG	4 cut(s)	434, 536, 587, 638
HaeIII	GGCC	3 cut(s)	315, 347, 419
HapII	CCGG	2 cut(s)	201, 384
Hin1I	GRCGYC	2 cut(s)	474, 576
Hin1II	CATG	4 cut(s)	71, 81, 164, 688
HinfI	GANTC	7 cut(s)	126, 266, 498, 509, 560, 611, 662
HpaII	CCGG	2 cut(s)	201, 384
HphI	GGTGA	1 cut(s)	83
Hpy166II	GTNNAC	7 cut(s)	6, 256, 427, 478, 529, 580, 631
Hpy188I	TCNGA	5 cut(s)	271, 435, 514, 565, 667
Hpy188III	TCNNGA	6 cut(s)	175, 240, 451, 553, 604, 655
Hpy8I	GTNNAC	7 cut(s)	6, 256, 427, 478, 529, 580, 631
HpyCH4III	ACNGT	2 cut(s)	172, 693
HpyCH4IV	ACGT	3 cut(s)	423, 474, 576
HpyCH4V	TGCA	4 cut(s)	33, 77, 115, 120
HpySE526I	ACGT	3 cut(s)	423, 474, 576
Hsp92I	GRCGYC	2 cut(s)	474, 576
Hsp92II	CATG	4 cut(s)	71, 81, 164, 688
LmnI	GCTCC	4 cut(s)	453, 555, 606, 657
LweI	GCATC	2 cut(s)	64, 610
MaeI	CTAG	2 cut(s)	123, 150
MaeII	ACGT	3 cut(s)	423, 474, 576
MboII	GAAGA	5 cut(s)	343, 350, 415, 466, 578
MfeI	CAATTG	1 cut(s)	412
MlsI	TGGCCA	1 cut(s)	347
MluCI	AATT	5 cut(s)	132, 232, 285, 412, 770
MluNI	TGGCCA	1 cut(s)	347
MlyI	GAGTC	1 cut(s)	492
MnlI	CCTC	9 cut(s)	181, 201, 326, 362, 508, 511, 562, 661, 664
Mox20I	TGGCCA	1 cut(s)	347
Mph1103I	ATGCAT	1 cut(s)	79
MscI	TGGCCA	1 cut(s)	347
MseI	TTAA	4 cut(s)	291, 380, 444, 741
MslI	CAYNNNNRTG	1 cut(s)	72
Msp20I	TGGCCA	1 cut(s)	347
MspCI	CTTAAG	1 cut(s)	443
MspI	CCGG	2 cut(s)	201, 384
MspR9I	CCNGG	1 cut(s)	201
MunI	CAATTG	1 cut(s)	412
NciI	CCSGG	1 cut(s)	201
NlaIII	CATG	4 cut(s)	71, 81, 164, 688
NlaIV	GGNNCC	4 cut(s)	198, 551, 602, 653
NsiI	ATGCAT	1 cut(s)	79
PfeI	GAWTC	6 cut(s)	126, 266, 509, 560, 611, 662
PflFI	GACNNNGTC	1 cut(s)	194
PinAI	ACCGGT	1 cut(s)	383
PleI	GAGTC	1 cut(s)	492
PpsI	GAGTC	1 cut(s)	492
PpuMI	RGGWCCY	1 cut(s)	196
Psp1406I	AACGTT	1 cut(s)	423
Psp5II	RGGWCCY	1 cut(s)	196
PspN4I	GGNNCC	4 cut(s)	198, 551, 602, 653
PspPI	GGNCC	2 cut(s)	196, 417
PspPPI	RGGWCCY	1 cut(s)	196
PsyI	GACNNNGTC	1 cut(s)	194
RseI	CAYNNNNRTG	1 cut(s)	72
SaqAI	TTAA	4 cut(s)	291, 380, 444, 741
Sau96I	GGNCC	2 cut(s)	196, 417
SchI	GAGTC	1 cut(s)	492
ScrFI	CCNGG	1 cut(s)	201
SfaNI	GCATC	2 cut(s)	64, 610
SinI	GGWCC	1 cut(s)	196
SmiMI	CAYNNNNRTG	1 cut(s)	72
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	5 cut(s)	132, 232, 285, 412, 770
SsiI	CCGC	3 cut(s)	521, 623, 674
SspMI	CTAG	2 cut(s)	123, 150
StyD4I	CCNGG	1 cut(s)	199
StyI	CCWWGG	1 cut(s)	149
TaaI	ACNGT	2 cut(s)	172, 693
TaiI	ACGT	3 cut(s)	426, 477, 579
TaqI	TCGA	2 cut(s)	318, 496
TasI	AATT	5 cut(s)	132, 232, 285, 412, 770
TfiI	GAWTC	6 cut(s)	126, 266, 509, 560, 611, 662
Tru1I	TTAA	4 cut(s)	291, 380, 444, 741
Tru9I	TTAA	4 cut(s)	291, 380, 444, 741
TscAI	CASTG	1 cut(s)	122
TspDTI	ATGAA	4 cut(s)	118, 279, 701, 707
TspGWI	ACGGA	2 cut(s)	86, 765
TspRI	CASTG	1 cut(s)	122
Tth111I	GACNNNGTC	1 cut(s)	194
Vha464I	CTTAAG	1 cut(s)	443
VpaK11BI	GGWCC	1 cut(s)	196
XapI	RAATTY	2 cut(s)	232, 770
XcmI	CCANNNNNNNNNTGG	1 cut(s)	65
XmaJI	CCTAGG	1 cut(s)	149
XmiI	GTMKAC	4 cut(s)	477, 528, 579, 630
XspI	CTAG	2 cut(s)	123, 150
ZraI	GACGTC	2 cut(s)	475, 577
Zsp2I	ATGCAT	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.