Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002558

Physical Location & Seq

Genomic Coordinates Reverse (-)

19999257 .. 20000159

Gene Structure 903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0112600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGAAGCCTAAGAAAAAGCAACCAAAGTTCAAGCAGTATAGAAGAGATACTGACTTACGGGATCCATACTTCAAACTGGGTCTGGAGTTTCCAACTATGGCACAATGTAGGGAGGCCATAAGAGAATTGTCTATCAAATCTGGAAGGCCACTAAGTTTTGACAAAAATGATTCTGACAAGGTTATAGTGAAATGTAAAGGACAATGTAAGGGAAGTTGTCCATTTAAAACATATGCATCTATGGTTGGGAATGGTCCTACTGTGATGGTCAAGACTTATGAGCCATTGCATCACTGCGGGAGGTCAAAAAAAATAAAGCATGCTACTTCTACTTGGATAGCAGACAAGTTTGATGAGGTCTTCAGATCCAATCCCAAAATAAAACCTAGATACTTTATTCGAATGGTTGCTAAGCAATATGGGATTGATCTTACACTTGATCAATTTTATAAGGCCAAGGAAAAAGCTAAGAGGAGGATACAAGGTGGCATTCAGGAGCAATATGCAGTACTAAGAGATTATGGTGAAGAATTAAAGAGACTTAACCCGGGCAGCACTGTTAAAATTAAAACTGAAATGACTGAAGAAGGGCCTGTATTTAAGAGAATATATATTTGTTATGCAGCTCTAAAGAAGGGTTTCATTGAAGGTTGTAGAAAAGTAGTAGGATGTGATGGGTGTCACATTAAGGGTCCATACAAAGGGCAACTTCTAAGTGTTGTAGGGGTCAATGCAAATAATGGTATGTACCCGATAGCATTTGCCATCGTTGAAGTTGAAAATAGAGAGACTTGGATGTGGTTTATGGAATACTTTATTAATGATGTGGAGATTTTAAATGCGGGAAATGGTTGGGTCTTTATTAGTGACAAGAAAAAAGGTCTACTTGATGCTATTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

300

Amino Acids

34.46

Weight (kDa)

9.52

Isoelectric Point (pI)

30.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DBD_Tnp_Mut	PF03108	25 - 86	1.3e-10	MuDR family transposase
MULE	PF10551	221 - 300	5.2e-11	MULE transposase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20142
fragaria_vesca	FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730
malus_domestica	MD05G1140000.v1.1
prunus_persica	Prupe.1G120200_v2.0.a1
pyrus_communis	pycom03g08420 pycom04g02910 pycom10g12010 pycom10g12080 pycom10g12100
rosa_chinensis	RchiOBHm_Chr3g0451631 RchiOBHm_Chr5g0026391 RchiOBHm_Chr7g0241711
rosa_laevigata	RLG00000004786 RLG00000004787 RLG00000029480
rosa_multiflora	Rmu_co8097864.1_g000001 Rmu_sc0001689.1_g000015 Rmu_sc0002354.1_g000038 Rmu_sc0003469.1_g000013 Rmu_sc0006326.1_g000044 Rmu_sc0038436.1_g000001 Rmu_sc0043107.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053220 Rroxscaffold_3G00218740 Rroxscaffold_3G00267480 Rroxscaffold_4G00317010 Rroxscaffold_6G00397670 Rroxscaffold_6G00397680
rosa_rugosa	Rorug01G0112600 Rorug05G0000700 Rorug06G0259600 Rorug07G0346700
rosa_samantha	Rh7AG085700
rosa_wichuraiana	Rw1G011340 Rw7G007550 Rw7G042350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	450
AccI	GTMKAC	1 cut(s)	883
AciI	CCGC	2 cut(s)	297, 842
AclWI	GGATC	3 cut(s)	56, 69, 360
AcuI	CTGAAG	2 cut(s)	346, 603
AfaI	GTAC	2 cut(s)	510, 749
AfiI	CCNNNNNNNGG	1 cut(s)	701
AgsI	TTSAA	6 cut(s)	31, 73, 647, 773, 779, 899
AluBI	AGCT	2 cut(s)	467, 626
AluI	AGCT	2 cut(s)	467, 626
Alw26I	GTCTC	2 cut(s)	532, 782
AlwI	GGATC	3 cut(s)	56, 69, 360
Ama87I	CYCGRG	1 cut(s)	547
AoxI	GGCC	4 cut(s)	114, 146, 453, 590
ApeKI	GCWGC	2 cut(s)	552, 623
AseI	ATTAAT	1 cut(s)	819
Asp700I	GAANNNNTTC	1 cut(s)	638
AspS9I	GGNCC	3 cut(s)	254, 590, 692
AsuC2I	CCSGG	2 cut(s)	548, 549
AsuHPI	GGTGA	1 cut(s)	536
AsuII	TTCGAA	1 cut(s)	400
AvaI	CYCGRG	1 cut(s)	547
AvaII	GGWCC	2 cut(s)	254, 692
BamHI	GGATCC	1 cut(s)	61
BbsI	GAAGAC	1 cut(s)	352
BbvI	GCAGC	2 cut(s)	564, 635
BccI	CCATC	3 cut(s)	259, 668, 773
BciVI	GTATCC	1 cut(s)	471
BclI	TGATCA	1 cut(s)	439
BcnI	CCSGG	2 cut(s)	548, 549
BcoDI	GTCTC	2 cut(s)	532, 782
BfaI	CTAG	1 cut(s)	387
BfuI	GTATCC	1 cut(s)	471
BisI	GCNGC	2 cut(s)	553, 624
BlpI	GCTNAGC	1 cut(s)	411
BlsI	GCNGC	2 cut(s)	554, 625
BmcAI	AGTACT	1 cut(s)	510
Bme1390I	CCNGG	2 cut(s)	548, 549
Bme18I	GGWCC	2 cut(s)	254, 692
BmeT110I	CYCGRG	1 cut(s)	547
BmgT120I	GGNCC	3 cut(s)	254, 590, 692
BmiI	GGNNCC	2 cut(s)	63, 693
BmrFI	CCNGG	2 cut(s)	548, 549
BmrI	ACTGGG	1 cut(s)	86
BmsI	GCATC	3 cut(s)	245, 298, 880
BmuI	ACTGGG	1 cut(s)	86
BpiI	GAAGAC	1 cut(s)	352
BpmI	CTGGAG	1 cut(s)	104
Bpu1102I	GCTNAGC	1 cut(s)	411
Bpu14I	TTCGAA	1 cut(s)	400
BpuMI	CCSGG	2 cut(s)	548, 549
BsaJI	CCNNGG	2 cut(s)	456, 547
Bsc4I	CCNNNNNNNGG	1 cut(s)	701
Bse1I	ACTGG	1 cut(s)	81
Bse3DI	GCAATG	1 cut(s)	284
BseDI	CCNNGG	2 cut(s)	456, 547
BseGI	GGATG	2 cut(s)	674, 801
BseLI	CCNNNNNNNGG	1 cut(s)	701
BseMI	GCAATG	1 cut(s)	284
BseNI	ACTGG	1 cut(s)	81
BseRI	GAGGAG	1 cut(s)	487
BseXI	GCAGC	2 cut(s)	564, 635
BshFI	GGCC	4 cut(s)	116, 148, 455, 592
BsiHKCI	CYCGRG	1 cut(s)	547
BsiSI	CCGG	1 cut(s)	548
BslI	CCNNNNNNNGG	1 cut(s)	701
BsmAI	GTCTC	2 cut(s)	532, 782
BsmI	GAATGC	1 cut(s)	489
BsnI	GGCC	4 cut(s)	116, 148, 455, 592
BsoBI	CYCGRG	1 cut(s)	547
Bsp119I	TTCGAA	1 cut(s)	400
Bsp143I	GATC	4 cut(s)	61, 365, 427, 439
Bsp1720I	GCTNAGC	1 cut(s)	411
BspACI	CCGC	2 cut(s)	297, 842
BspANI	GGCC	4 cut(s)	116, 148, 455, 592
BspLI	GGNNCC	2 cut(s)	63, 693
BspPI	GGATC	3 cut(s)	56, 69, 360
BspT104I	TTCGAA	1 cut(s)	400
BsrDI	GCAATG	1 cut(s)	284
BsrI	ACTGG	1 cut(s)	81
BssECI	CCNNGG	2 cut(s)	456, 547
BssMI	GATC	4 cut(s)	61, 365, 427, 439
BssT1I	CCWWGG	1 cut(s)	456
Bst4CI	ACNGT	2 cut(s)	262, 559
Bst6I	CTCTTC	1 cut(s)	37
BstBI	TTCGAA	1 cut(s)	400
BstC8I	GCNNGC	1 cut(s)	321
BstDEI	CTNAG	6 cut(s)	9, 152, 411, 468, 512, 713
BstF5I	GGATG	2 cut(s)	674, 801
BstKTI	GATC	4 cut(s)	64, 368, 430, 442
BstMAI	GTCTC	2 cut(s)	532, 782
BstMBI	GATC	4 cut(s)	61, 365, 427, 439
BstNSI	RCATGY	1 cut(s)	323
BstSCI	CCNGG	2 cut(s)	546, 547
BstV1I	GCAGC	2 cut(s)	564, 635
BstV2I	GAAGAC	1 cut(s)	352
BstX2I	RGATCY	2 cut(s)	61, 365
BstYI	RGATCY	2 cut(s)	61, 365
BsuI	GTATCC	1 cut(s)	471
BsuRI	GGCC	4 cut(s)	116, 148, 455, 592
BtsCI	GGATG	2 cut(s)	674, 801
BtsI	GCAGTG	1 cut(s)	292
BtsIMutI	CAGTG	2 cut(s)	292, 555
Cac8I	GCNNGC	1 cut(s)	321
Cfr13I	GGNCC	3 cut(s)	254, 590, 692
Cfr9I	CCCGGG	1 cut(s)	547
Csp6I	GTAC	2 cut(s)	509, 748
CviAII	CATG	1 cut(s)	320
CviJI	RGCY	8 cut(s)	7, 116, 148, 283, 455, 467, 592, 626
CviKI_1	RGCY	8 cut(s)	7, 116, 148, 283, 455, 467, 592, 626
CviQI	GTAC	2 cut(s)	509, 748
DdeI	CTNAG	6 cut(s)	9, 152, 411, 468, 512, 713
DpnI	GATC	4 cut(s)	63, 367, 429, 441
DpnII	GATC	4 cut(s)	61, 365, 427, 439
DraI	TTTAAA	2 cut(s)	226, 837
Eam1104I	CTCTTC	1 cut(s)	37
EarI	CTCTTC	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	456
Eco47I	GGWCC	2 cut(s)	254, 692
Eco57I	CTGAAG	2 cut(s)	346, 603
Eco88I	CYCGRG	1 cut(s)	547
EcoO109I	RGGNCCY	1 cut(s)	590
EcoT14I	CCWWGG	1 cut(s)	456
EcoT22I	ATGCAT	1 cut(s)	238
ErhI	CCWWGG	1 cut(s)	456
FaeI	CATG	1 cut(s)	323
FalI	AAGNNNNNCTT	4 cut(s)	693, 725, 870, 902
FatI	CATG	1 cut(s)	319
FauI	CCCGC	2 cut(s)	290, 835
FauNDI	CATATG	1 cut(s)	232
FbaI	TGATCA	1 cut(s)	439
FblI	GTMKAC	1 cut(s)	883
Fnu4HI	GCNGC	2 cut(s)	553, 624
FokI	GGATG	2 cut(s)	681, 808
Fsp4HI	GCNGC	2 cut(s)	553, 624
FspBI	CTAG	1 cut(s)	387
GluI	GCNGC	2 cut(s)	553, 624
GsuI	CTGGAG	1 cut(s)	104
HaeIII	GGCC	4 cut(s)	116, 148, 455, 592
HapII	CCGG	1 cut(s)	548
Hin1II	CATG	1 cut(s)	323
HinfI	GANTC	1 cut(s)	170
HpaII	CCGG	1 cut(s)	548
HphI	GGTGA	1 cut(s)	536
Hpy166II	GTNNAC	1 cut(s)	884
Hpy188I	TCNGA	2 cut(s)	175, 365
Hpy188III	TCNNGA	4 cut(s)	83, 141, 271, 494
Hpy8I	GTNNAC	1 cut(s)	884
HpyAV	CCTTC	4 cut(s)	138, 581, 628, 641
HpyCH4III	ACNGT	2 cut(s)	262, 559
HpyCH4V	TGCA	5 cut(s)	236, 289, 506, 623, 734
HpyF3I	CTNAG	6 cut(s)	9, 152, 411, 468, 512, 713
Hsp92II	CATG	1 cut(s)	323
Ksp22I	TGATCA	1 cut(s)	439
Kzo9I	GATC	4 cut(s)	61, 365, 427, 439
LmnI	GCTCC	1 cut(s)	496
LpnPI	CCDG	6 cut(s)	62, 68, 126, 479, 561, 606
Lsp1109I	GCAGC	2 cut(s)	564, 635
LweI	GCATC	3 cut(s)	245, 298, 880
MaeI	CTAG	1 cut(s)	387
MaeIII	GTNAC	2 cut(s)	680, 866
MalI	GATC	4 cut(s)	63, 367, 429, 441
MboI	GATC	4 cut(s)	61, 365, 427, 439
MboII	GAAGA	4 cut(s)	54, 352, 539, 596
MflI	RGATCY	2 cut(s)	61, 365
MluCI	AATT	4 cut(s)	125, 443, 530, 564
MmeI	TCCRAC	1 cut(s)	116
MnlI	CCTC	5 cut(s)	106, 294, 349, 465, 468
Mph1103I	ATGCAT	1 cut(s)	238
MroXI	GAANNNNTTC	1 cut(s)	638
MseI	TTAA	9 cut(s)	225, 533, 543, 561, 567, 600, 687, 819, 836
MspI	CCGG	1 cut(s)	548
MspR9I	CCNGG	2 cut(s)	548, 549
Mva1269I	GAATGC	1 cut(s)	489
NciI	CCSGG	2 cut(s)	548, 549
NdeI	CATATG	1 cut(s)	232
NdeII	GATC	4 cut(s)	61, 365, 427, 439
NlaIII	CATG	1 cut(s)	323
NlaIV	GGNNCC	2 cut(s)	63, 693
NmuCI	GTSAC	2 cut(s)	680, 866
NsiI	ATGCAT	1 cut(s)	238
NspI	RCATGY	1 cut(s)	323
NspV	TTCGAA	1 cut(s)	400
PaeI	GCATGC	1 cut(s)	323
PctI	GAATGC	1 cut(s)	489
PdmI	GAANNNNTTC	1 cut(s)	638
PfeI	GAWTC	1 cut(s)	170
PkrI	GCNGC	2 cut(s)	554, 625
PshBI	ATTAAT	1 cut(s)	819
PsiI	TTATAA	1 cut(s)	450
PspN4I	GGNNCC	2 cut(s)	63, 693
PspPI	GGNCC	3 cut(s)	254, 590, 692
PsuI	RGATCY	2 cut(s)	61, 365
RsaI	GTAC	2 cut(s)	510, 749
RsaNI	GTAC	2 cut(s)	509, 748
SaqAI	TTAA	9 cut(s)	225, 533, 543, 561, 567, 600, 687, 819, 836
SatI	GCNGC	2 cut(s)	553, 624
Sau3AI	GATC	4 cut(s)	61, 365, 427, 439
Sau96I	GGNCC	3 cut(s)	254, 590, 692
ScaI	AGTACT	1 cut(s)	510
ScrFI	CCNGG	2 cut(s)	548, 549
SetI	ASST	9 cut(s)	183, 305, 360, 388, 469, 487, 628, 652, 883
SfaNI	GCATC	3 cut(s)	245, 298, 880
SfuI	TTCGAA	1 cut(s)	400
SinI	GGWCC	2 cut(s)	254, 692
SmaI	CCCGGG	1 cut(s)	549
SphI	GCATGC	1 cut(s)	323
Sse9I	AATT	4 cut(s)	125, 443, 530, 564
SsiI	CCGC	2 cut(s)	297, 842
SspMI	CTAG	1 cut(s)	387
StyD4I	CCNGG	2 cut(s)	546, 547
StyI	CCWWGG	1 cut(s)	456
TaaI	ACNGT	2 cut(s)	262, 559
TaqI	TCGA	1 cut(s)	400
TasI	AATT	4 cut(s)	125, 443, 530, 564
TatI	WGTACW	1 cut(s)	508
TfiI	GAWTC	1 cut(s)	170
Tru1I	TTAA	9 cut(s)	225, 533, 543, 561, 567, 600, 687, 819, 836
Tru9I	TTAA	9 cut(s)	225, 533, 543, 561, 567, 600, 687, 819, 836
TscAI	CASTG	2 cut(s)	299, 562
TseFI	GTSAC	2 cut(s)	680, 866
TseI	GCWGC	2 cut(s)	552, 623
Tsp45I	GTSAC	2 cut(s)	680, 866
TspDTI	ATGAA	2 cut(s)	17, 631
TspMI	CCCGGG	1 cut(s)	547
TspRI	CASTG	2 cut(s)	299, 562
VpaK11BI	GGWCC	2 cut(s)	254, 692
VspI	ATTAAT	1 cut(s)	819
XceI	RCATGY	1 cut(s)	323
XmaI	CCCGGG	1 cut(s)	547
XmiI	GTMKAC	1 cut(s)	883
XmnI	GAANNNNTTC	1 cut(s)	638
XspI	CTAG	1 cut(s)	387
ZrmI	AGTACT	1 cut(s)	510
Zsp2I	ATGCAT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.