Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003469.1

Orthogroup ID

OG0002558

Physical Location & Seq

Genomic Coordinates Forward (+)

63883 .. 64362

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003469.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atggcttcttcttctgcacctgacggctttaggtatgatgtctttcttagtttcagaggggagggcacccacaagacttttaccagccatcttcttgcggctttagatagggagcaaatcaaaacctacatagatgacgaacttaagatcggagaggaaattgaacctgcccttcttaaagcaattgaggaatcaaagctttccgtggttattttgtcacaaaactatgcttcttccacatggtgcttggatgaacttgcacatattatggaatgtaaagaaagaaataaacaattggttatacccattttttacgaagtagatccgtcacatgtacgccaccagagggagagctatgcagctgcatttgttcgacatgaagaacatttcaaggacaagccagacaagttgctcaagtggagggatgctttaactaaatcttccaaactagctgggtttgattcacgcaactttcggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

159

Amino Acids

18.38

Weight (kDa)

6.17

Isoelectric Point (pI)

49.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20142
fragaria_vesca	FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730
malus_domestica	MD05G1140000.v1.1
prunus_persica	Prupe.1G120200_v2.0.a1
pyrus_communis	pycom03g08420 pycom04g02910 pycom10g12010 pycom10g12080 pycom10g12100
rosa_chinensis	RchiOBHm_Chr3g0451631 RchiOBHm_Chr5g0026391 RchiOBHm_Chr7g0241711
rosa_laevigata	RLG00000004786 RLG00000004787 RLG00000029480
rosa_multiflora	Rmu_co8097864.1_g000001 Rmu_sc0001689.1_g000015 Rmu_sc0002354.1_g000038 Rmu_sc0003469.1_g000013 Rmu_sc0006326.1_g000044 Rmu_sc0038436.1_g000001 Rmu_sc0043107.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053220 Rroxscaffold_3G00218740 Rroxscaffold_3G00267480 Rroxscaffold_4G00317010 Rroxscaffold_6G00397670 Rroxscaffold_6G00397680
rosa_rugosa	Rorug01G0112600 Rorug05G0000700 Rorug06G0259600 Rorug07G0346700
rosa_samantha	Rh7AG085700
rosa_wichuraiana	Rw1G011340 Rw7G007550 Rw7G042350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	175
AccB1I	GGYRCC	1 cut(s)	65
AciI	CCGC	1 cut(s)	98
AclWI	GGATC	1 cut(s)	317
AdeI	CACNNNGTG	1 cut(s)	243
AfaI	GTAC	1 cut(s)	336
AfiI	CCNNNNNNNGG	1 cut(s)	346
AflII	CTTAAG	1 cut(s)	143
AflIII	ACRYGT	1 cut(s)	331
AgsI	TTSAA	2 cut(s)	164, 391
AluBI	AGCT	4 cut(s)	199, 354, 362, 452
AluI	AGCT	4 cut(s)	199, 354, 362, 452
AlwI	GGATC	1 cut(s)	317
ApeKI	GCWGC	2 cut(s)	359, 362
BaeGI	GKGCMC	1 cut(s)	68
BanI	GGYRCC	1 cut(s)	65
BbvI	GCAGC	2 cut(s)	349, 371
BccI	CCATC	1 cut(s)	96
BceAI	ACGGC	1 cut(s)	40
BfaI	CTAG	1 cut(s)	449
BfrI	CTTAAG	1 cut(s)	143
BfuAI	ACCTGC	1 cut(s)	175
BisI	GCNGC	3 cut(s)	99, 360, 363
BlsI	GCNGC	3 cut(s)	100, 361, 364
BmiI	GGNNCC	1 cut(s)	67
BmsI	GCATC	1 cut(s)	415
BpuEI	CTTGAG	1 cut(s)	398
BsaJI	CCNNGG	1 cut(s)	204
Bsc4I	CCNNNNNNNGG	1 cut(s)	346
BseDI	CCNNGG	1 cut(s)	204
BseGI	GGATG	2 cut(s)	256, 430
BseLI	CCNNNNNNNGG	1 cut(s)	346
BseSI	GKGCMC	1 cut(s)	68
BseXI	GCAGC	2 cut(s)	349, 371
BseYI	CCCAGC	1 cut(s)	452
BshNI	GGYRCC	1 cut(s)	65
BslI	CCNNNNNNNGG	1 cut(s)	346
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp143I	GATC	2 cut(s)	147, 322
BspACI	CCGC	1 cut(s)	98
BspLI	GGNNCC	1 cut(s)	67
BspMI	ACCTGC	1 cut(s)	175
BspPI	GGATC	1 cut(s)	317
BspT107I	GGYRCC	1 cut(s)	65
BspTI	CTTAAG	1 cut(s)	143
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	2 cut(s)	147, 322
BstAFI	CTTAAG	1 cut(s)	143
BstDEI	CTNAG	1 cut(s)	47
BstDSI	CCRYGG	1 cut(s)	204
BstF5I	GGATG	2 cut(s)	256, 430
BstKTI	GATC	2 cut(s)	150, 325
BstMBI	GATC	2 cut(s)	147, 322
BstNSI	RCATGY	1 cut(s)	335
BstSLI	GKGCMC	1 cut(s)	68
BstV1I	GCAGC	2 cut(s)	349, 371
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
BtgI	CCRYGG	1 cut(s)	204
BtsCI	GGATG	2 cut(s)	256, 430
BveI	ACCTGC	1 cut(s)	175
Csp6I	GTAC	1 cut(s)	335
CviAII	CATG	3 cut(s)	240, 332, 377
CviJI	RGCY	9 cut(s)	5, 27, 87, 101, 199, 354, 362, 400, 452
CviKI_1	RGCY	9 cut(s)	5, 27, 87, 101, 199, 354, 362, 400, 452
CviQI	GTAC	1 cut(s)	335
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	2 cut(s)	149, 324
DpnII	GATC	2 cut(s)	147, 322
DraIII	CACNNNGTG	1 cut(s)	243
FaeI	CATG	3 cut(s)	243, 335, 380
FatI	CATG	3 cut(s)	239, 331, 376
Fnu4HI	GCNGC	3 cut(s)	99, 360, 363
FokI	GGATG	2 cut(s)	263, 437
Fsp4HI	GCNGC	3 cut(s)	99, 360, 363
FspBI	CTAG	1 cut(s)	449
GluI	GCNGC	3 cut(s)	99, 360, 363
GsaI	CCCAGC	1 cut(s)	456
Hin1II	CATG	3 cut(s)	243, 335, 380
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	2 cut(s)	191, 461
Hpy188I	TCNGA	2 cut(s)	56, 152
HpyAV	CCTTC	1 cut(s)	182
HpyCH4V	TGCA	4 cut(s)	17, 260, 359, 365
HpyF3I	CTNAG	1 cut(s)	47
Hsp92II	CATG	3 cut(s)	243, 335, 380
Kzo9I	GATC	2 cut(s)	147, 322
LmnI	GCTCC	1 cut(s)	112
LpnPI	CCDG	6 cut(s)	33, 97, 180, 356, 414, 438
Lsp1109I	GCAGC	2 cut(s)	349, 371
LweI	GCATC	1 cut(s)	415
MaeI	CTAG	1 cut(s)	449
MaeIII	GTNAC	2 cut(s)	216, 327
MalI	GATC	2 cut(s)	149, 324
MboI	GATC	2 cut(s)	147, 322
MboII	GAAGA	5 cut(s)	3, 83, 225, 392, 432
MfeI	CAATTG	2 cut(s)	183, 293
MflI	RGATCY	1 cut(s)	322
MhlI	GDGCHC	1 cut(s)	68
MluCI	AATT	3 cut(s)	159, 183, 293
MnlI	CCTC	6 cut(s)	50, 55, 148, 181, 339, 414
MseI	TTAA	3 cut(s)	144, 177, 431
MspA1I	CMGCKG	1 cut(s)	362
MspCI	CTTAAG	1 cut(s)	143
MunI	CAATTG	2 cut(s)	183, 293
NdeII	GATC	2 cut(s)	147, 322
NlaIII	CATG	3 cut(s)	243, 335, 380
NlaIV	GGNNCC	1 cut(s)	67
NmuCI	GTSAC	2 cut(s)	216, 327
NspI	RCATGY	1 cut(s)	335
PciI	ACATGT	1 cut(s)	331
PfeI	GAWTC	2 cut(s)	191, 461
PkrI	GCNGC	3 cut(s)	100, 361, 364
PscI	ACATGT	1 cut(s)	331
PspFI	CCCAGC	1 cut(s)	452
PspN4I	GGNNCC	1 cut(s)	67
PsuI	RGATCY	1 cut(s)	322
PvuII	CAGCTG	1 cut(s)	362
RsaI	GTAC	1 cut(s)	336
RsaNI	GTAC	1 cut(s)	335
SaqAI	TTAA	3 cut(s)	144, 177, 431
SatI	GCNGC	3 cut(s)	99, 360, 363
Sau3AI	GATC	2 cut(s)	147, 322
SduI	GDGCHC	1 cut(s)	68
SetI	ASST	8 cut(s)	22, 35, 128, 169, 201, 356, 364, 454
SfaNI	GCATC	1 cut(s)	415
SmlI	CTYRAG	2 cut(s)	143, 413
SmoI	CTYRAG	2 cut(s)	143, 413
Sse9I	AATT	3 cut(s)	159, 183, 293
SsiI	CCGC	1 cut(s)	98
SspMI	CTAG	1 cut(s)	449
TaqI	TCGA	1 cut(s)	373
TasI	AATT	3 cut(s)	159, 183, 293
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	2 cut(s)	191, 461
Tru1I	TTAA	3 cut(s)	144, 177, 431
Tru9I	TTAA	3 cut(s)	144, 177, 431
TseFI	GTSAC	2 cut(s)	216, 327
TseI	GCWGC	2 cut(s)	359, 362
Tsp45I	GTSAC	2 cut(s)	216, 327
TspDTI	ATGAA	2 cut(s)	267, 393
TspGWI	ACGGA	2 cut(s)	193, 315
Vha464I	CTTAAG	1 cut(s)	143
XceI	RCATGY	1 cut(s)	335
XcmI	CCANNNNNNNNNTGG	1 cut(s)	244
XspI	CTAG	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.