Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002558

Physical Location & Seq

Genomic Coordinates Reverse (-)

68665 .. 73039

Gene Structure 4375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0000700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGTATCAACCAAACGGTGCTCCTAGTTCAGGCTTAATCCAGAATAATTTGTTAGTCCATGGTCAATATTTAGACTGTGGCACCAATACAATGGACAATGTCAATGGAGCGAAAAGTCCCAGCAACTCTAATCTTGCCTCAAAGCAGCGACTGCGTTGGACACATGAGCTTCATGACCGCTTTGTTGATGCCGTGGCACAACTCGGTGGGCCAGATCGTGCAACACCCAAAGGTGTTTTGAGAGTGATGGGTGTACAAGGTTTAACCATATACCATGTAAAGAGCCATTTACAGAAATATCGACTTGCAAAGTACGTACCCGACTCCTCATCTGATGGGGGAAAAGCTGACAAGAAAGAACCAGGGGACGTGCTTTCCAATGTGGATGGTTCATCTGGAATGCAAATTACGGAAGCATTAAAGCTGCAAATGGAGGTGCAGAAGCGACTGCATGAACAATTAGAGGTACAGAGACAGCTACAGTTACGGATAGAAGCACAAGGTAAATACTTGAAGAAAATTATCGAAGAGCAACAACGACTTAGTGGAGTTCTTTCAGAAGCACCTGGCCCTGGGAACTCCACCCGTGCATCAGATGATAATTGCCCAGAATCTGACAAGGTTGACCCAGCAACCCCTGCCCCGACCTCTGAGTGCCCCATCCAAGACAAGGCTATCAAGGAACGCGCACCAGCCAAGAGCCTTTCCGTCGATGAATCTTGCTCATCTCGTCATGATGAACCCTCGACTCCAGATTCTGGTTGTCATGTTATTTCTCCAGCTGAGAGCCCAAAAGCAGAGAGGTCGACGAAGAAGCAAAGGTTTAGCATGGGTGAAGCATTTTCTAATCCAGAAGTGGTGCTTACACATCAAATATTGGAGTCCAGCTTAAACTCTTACCAGCAAGCACACACCATTTTCATGCCCAGGGAGCATTCTAATCCCACATCTGGGATTTCTGTCAGGAATGTTGATTTGGAACAAGTTGCTGGGAGTGATATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

334

Amino Acids

36.49

Weight (kDa)

6.27

Isoelectric Point (pI)

46.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	50 - 101	3.3e-09	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	134 - 180	5.6e-23	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20142
fragaria_vesca	FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730
malus_domestica	MD05G1140000.v1.1
prunus_persica	Prupe.1G120200_v2.0.a1
pyrus_communis	pycom03g08420 pycom04g02910 pycom10g12010 pycom10g12080 pycom10g12100
rosa_chinensis	RchiOBHm_Chr3g0451631 RchiOBHm_Chr5g0026391 RchiOBHm_Chr7g0241711
rosa_laevigata	RLG00000004786 RLG00000004787 RLG00000029480
rosa_multiflora	Rmu_co8097864.1_g000001 Rmu_sc0001689.1_g000015 Rmu_sc0002354.1_g000038 Rmu_sc0003469.1_g000013 Rmu_sc0006326.1_g000044 Rmu_sc0038436.1_g000001 Rmu_sc0043107.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053220 Rroxscaffold_3G00218740 Rroxscaffold_3G00267480 Rroxscaffold_4G00317010 Rroxscaffold_6G00397670 Rroxscaffold_6G00397680
rosa_rugosa	Rorug01G0112600 Rorug05G0000700 Rorug06G0259600 Rorug07G0346700
rosa_samantha	Rh7AG085700
rosa_wichuraiana	Rw1G011340 Rw7G007550 Rw7G042350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	80
AccB7I	CCANNNNNTGG	1 cut(s)	758
AccI	GTMKAC	1 cut(s)	806
AccII	CGCG	1 cut(s)	687
AciI	CCGC	1 cut(s)	178
AfaI	GTAC	4 cut(s)	255, 314, 318, 468
AfiI	CCNNNNNNNGG	6 cut(s)	29, 572, 670, 758, 950, 951
AgsI	TTSAA	1 cut(s)	514
AjiI	CACGTC	1 cut(s)	370
AjnI	CCWGG	4 cut(s)	361, 565, 571, 926
AjuI	GAANNNNNNNTTGG	2 cut(s)	959, 991
AluBI	AGCT	6 cut(s)	169, 347, 424, 478, 782, 888
AluI	AGCT	6 cut(s)	169, 347, 424, 478, 782, 888
Alw21I	GWGCWC	1 cut(s)	22
Alw26I	GTCTC	1 cut(s)	466
AlwNI	CAGNNNCTG	3 cut(s)	151, 614, 758
AoxI	GGCC	2 cut(s)	209, 568
ApeKI	GCWGC	2 cut(s)	145, 424
AspLEI	GCGC	1 cut(s)	689
AspS9I	GGNCC	2 cut(s)	209, 569
AsuHPI	GGTGA	1 cut(s)	845
BaeGI	GKGCMC	1 cut(s)	659
BanI	GGYRCC	1 cut(s)	80
BanII	GRGCYC	1 cut(s)	791
Bbv12I	GWGCWC	1 cut(s)	22
BbvI	GCAGC	2 cut(s)	157, 411
BccI	CCATC	4 cut(s)	241, 329, 380, 668
BceAI	ACGGC	1 cut(s)	176
BcgI	CGANNNNNNTGC	2 cut(s)	786, 820
BciT130I	CCWGG	4 cut(s)	363, 567, 573, 928
BcoDI	GTCTC	1 cut(s)	466
BfaI	CTAG	1 cut(s)	24
BfmI	CTRYAG	1 cut(s)	479
BisI	GCNGC	2 cut(s)	146, 425
BlsI	GCNGC	2 cut(s)	147, 426
Bme1390I	CCNGG	4 cut(s)	363, 567, 573, 928
BmgBI	CACGTC	1 cut(s)	370
BmgT120I	GGNCC	2 cut(s)	209, 569
BmiI	GGNNCC	1 cut(s)	82
BmrFI	CCNGG	4 cut(s)	363, 567, 573, 928
BmsI	GCATC	2 cut(s)	178, 599
BpmI	CTGGAG	2 cut(s)	735, 762
BsaAI	YACGTR	1 cut(s)	316
BsaJI	CCNNGG	7 cut(s)	58, 192, 362, 571, 572, 926, 927
Bsc4I	CCNNNNNNNGG	6 cut(s)	29, 572, 670, 758, 950, 951
BseBI	CCWGG	4 cut(s)	363, 567, 573, 928
BseDI	CCNNGG	7 cut(s)	58, 192, 362, 571, 572, 926, 927
BseGI	GGATG	2 cut(s)	391, 660
BseLI	CCNNNNNNNGG	6 cut(s)	29, 572, 670, 758, 950, 951
BseMII	CTCAG	2 cut(s)	642, 774
BseRI	GAGGAG	1 cut(s)	316
BseSI	GKGCMC	1 cut(s)	659
BseXI	GCAGC	2 cut(s)	157, 411
BseYI	CCCAGC	3 cut(s)	119, 628, 989
BsgI	GTGCAG	1 cut(s)	458
Bsh1236I	CGCG	1 cut(s)	687
BshFI	GGCC	2 cut(s)	211, 570
BshNI	GGYRCC	1 cut(s)	80
BsiHKAI	GWGCWC	1 cut(s)	22
BslFI	GGGAC	2 cut(s)	102, 380
BslI	CCNNNNNNNGG	6 cut(s)	29, 572, 670, 758, 950, 951
BsmAI	GTCTC	1 cut(s)	466
BsmFI	GGGAC	2 cut(s)	102, 380
BsmI	GAATGC	2 cut(s)	405, 934
BsnI	GGCC	2 cut(s)	211, 570
Bsp1286I	GDGCHC	3 cut(s)	22, 659, 791
Bsp1407I	TGTACA	1 cut(s)	253
Bsp143I	GATC	1 cut(s)	214
Bsp19I	CCATGG	1 cut(s)	58
BspACI	CCGC	1 cut(s)	178
BspANI	GGCC	2 cut(s)	211, 570
BspCNI	CTCAG	2 cut(s)	643, 775
BspFNI	CGCG	1 cut(s)	687
BspHI	TCATGA	2 cut(s)	172, 733
BspLI	GGNNCC	1 cut(s)	82
BspQI	GCTCTTC	1 cut(s)	522
BspT107I	GGYRCC	1 cut(s)	80
BsrGI	TGTACA	1 cut(s)	253
BssECI	CCNNGG	7 cut(s)	58, 192, 362, 571, 572, 926, 927
BssMI	GATC	1 cut(s)	214
BssT1I	CCWWGG	1 cut(s)	58
Bst2UI	CCWGG	4 cut(s)	363, 567, 573, 928
Bst4CI	ACNGT	3 cut(s)	17, 77, 483
Bst6I	CTCTTC	1 cut(s)	522
BstAPI	GCANNNNNTGC	2 cut(s)	151, 638
BstAUI	TGTACA	1 cut(s)	253
BstBAI	YACGTR	1 cut(s)	316
BstC8I	GCNNGC	1 cut(s)	906
BstDEI	CTNAG	3 cut(s)	542, 651, 783
BstDSI	CCRYGG	2 cut(s)	58, 192
BstENI	CCTNNNNNAGG	1 cut(s)	27
BstF5I	GGATG	2 cut(s)	391, 660
BstFNI	CGCG	1 cut(s)	687
BstHHI	GCGC	1 cut(s)	689
BstKTI	GATC	1 cut(s)	217
BstMAI	GTCTC	1 cut(s)	466
BstMBI	GATC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	3 cut(s)	151, 638, 931
BstNI	CCWGG	4 cut(s)	363, 567, 573, 928
BstSCI	CCNGG	4 cut(s)	361, 565, 571, 926
BstSFI	CTRYAG	1 cut(s)	479
BstSLI	GKGCMC	1 cut(s)	659
BstSNI	TACGTA	1 cut(s)	316
BstUI	CGCG	1 cut(s)	687
BstV1I	GCAGC	2 cut(s)	157, 411
BstXI	CCANNNNNNTGG	1 cut(s)	91
BsuRI	GGCC	2 cut(s)	211, 570
BtgI	CCRYGG	2 cut(s)	58, 192
BtrI	CACGTC	1 cut(s)	370
BtsCI	GGATG	2 cut(s)	391, 660
Cac8I	GCNNGC	1 cut(s)	906
CaiI	CAGNNNCTG	3 cut(s)	151, 614, 758
CciI	TCATGA	2 cut(s)	172, 733
CfoI	GCGC	1 cut(s)	689
Cfr13I	GGNCC	2 cut(s)	209, 569
Csp6I	GTAC	4 cut(s)	254, 313, 317, 467
CviAII	CATG	9 cut(s)	59, 164, 173, 275, 452, 734, 767, 829, 922
CviQI	GTAC	4 cut(s)	254, 313, 317, 467
DdeI	CTNAG	3 cut(s)	542, 651, 783
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
Eam1104I	CTCTTC	1 cut(s)	522
EarI	CTCTTC	1 cut(s)	522
Eco105I	TACGTA	1 cut(s)	316
Eco130I	CCWWGG	1 cut(s)	58
Eco24I	GRGCYC	1 cut(s)	791
EcoNI	CCTNNNNNAGG	1 cut(s)	27
EcoRII	CCWGG	4 cut(s)	361, 565, 571, 926
EcoT14I	CCWWGG	1 cut(s)	58
EcoT38I	GRGCYC	1 cut(s)	791
ErhI	CCWWGG	1 cut(s)	58
FaeI	CATG	9 cut(s)	62, 167, 176, 278, 455, 737, 770, 832, 925
FalI	AAGNNNNNCTT	2 cut(s)	846, 878
FaqI	GGGAC	2 cut(s)	102, 380
FatI	CATG	9 cut(s)	58, 163, 172, 274, 451, 733, 766, 828, 921
FblI	GTMKAC	1 cut(s)	806
Fnu4HI	GCNGC	2 cut(s)	146, 425
FokI	GGATG	2 cut(s)	398, 647
FriOI	GRGCYC	1 cut(s)	791
Fsp4HI	GCNGC	2 cut(s)	146, 425
FspBI	CTAG	1 cut(s)	24
GlaI	GCGC	1 cut(s)	688
GluI	GCNGC	2 cut(s)	146, 425
GsaI	CCCAGC	3 cut(s)	123, 632, 993
GsuI	CTGGAG	2 cut(s)	735, 762
HaeIII	GGCC	2 cut(s)	211, 570
HhaI	GCGC	1 cut(s)	689
Hin1II	CATG	9 cut(s)	62, 167, 176, 278, 455, 737, 770, 832, 925
Hin6I	GCGC	1 cut(s)	687
HinP1I	GCGC	1 cut(s)	687
HincII	GTYRAC	2 cut(s)	625, 807
HindII	GTYRAC	2 cut(s)	625, 807
HinfI	GANTC	6 cut(s)	323, 611, 716, 748, 755, 881
HphI	GGTGA	1 cut(s)	845
Hpy166II	GTNNAC	3 cut(s)	254, 625, 807
Hpy188I	TCNGA	5 cut(s)	334, 559, 595, 616, 652
Hpy188III	TCNNGA	7 cut(s)	40, 173, 396, 734, 752, 851, 964
Hpy8I	GTNNAC	3 cut(s)	254, 625, 807
Hpy99I	CGWCG	2 cut(s)	713, 811
HpyCH4III	ACNGT	3 cut(s)	17, 77, 483
HpyCH4IV	ACGT	2 cut(s)	315, 369
HpyCH4V	TGCA	7 cut(s)	221, 308, 403, 427, 439, 451, 590
HpyF10VI	GCNNNNNNNGC	3 cut(s)	151, 638, 931
HpyF3I	CTNAG	3 cut(s)	542, 651, 783
HpySE526I	ACGT	2 cut(s)	315, 369
Hsp92II	CATG	9 cut(s)	62, 167, 176, 278, 455, 737, 770, 832, 925
HspAI	GCGC	1 cut(s)	687
Kzo9I	GATC	1 cut(s)	214
LguI	GCTCTTC	1 cut(s)	522
LmnI	GCTCC	3 cut(s)	25, 107, 931
Lsp1109I	GCAGC	2 cut(s)	157, 411
LweI	GCATC	2 cut(s)	178, 599
MaeI	CTAG	1 cut(s)	24
MaeII	ACGT	2 cut(s)	315, 369
MaeIII	GTNAC	1 cut(s)	483
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MboII	GAAGA	3 cut(s)	526, 539, 823
MhlI	GDGCHC	3 cut(s)	22, 659, 791
MluCI	AATT	5 cut(s)	46, 405, 458, 519, 601
MlyI	GAGTC	3 cut(s)	317, 742, 890
MmeI	TCCRAC	1 cut(s)	137
MnlI	CCTC	7 cut(s)	148, 337, 427, 457, 658, 754, 795
MseI	TTAA	4 cut(s)	35, 263, 419, 890
MslI	CAYNNNNRTG	1 cut(s)	920
MspA1I	CMGCKG	1 cut(s)	782
MspR9I	CCNGG	4 cut(s)	363, 567, 573, 928
Mva1269I	GAATGC	2 cut(s)	405, 934
MvaI	CCWGG	4 cut(s)	363, 567, 573, 928
MvnI	CGCG	1 cut(s)	687
MwoI	GCNNNNNNNGC	3 cut(s)	151, 638, 931
NcoI	CCATGG	1 cut(s)	58
NdeII	GATC	1 cut(s)	214
NlaIII	CATG	9 cut(s)	62, 167, 176, 278, 455, 737, 770, 832, 925
NlaIV	GGNNCC	1 cut(s)	82
PagI	TCATGA	2 cut(s)	172, 733
PasI	CCCWGGG	2 cut(s)	572, 927
PciSI	GCTCTTC	1 cut(s)	522
PctI	GAATGC	2 cut(s)	405, 934
PfeI	GAWTC	3 cut(s)	611, 716, 755
PflFI	GACNNNGTC	1 cut(s)	98
PflMI	CCANNNNNTGG	1 cut(s)	758
PkrI	GCNGC	2 cut(s)	147, 426
PleI	GAGTC	3 cut(s)	317, 742, 889
PpsI	GAGTC	3 cut(s)	317, 742, 889
Ppu21I	YACGTR	1 cut(s)	316
Psp6I	CCWGG	4 cut(s)	361, 565, 571, 926
PspFI	CCCAGC	3 cut(s)	119, 628, 989
PspGI	CCWGG	4 cut(s)	361, 565, 571, 926
PspN4I	GGNNCC	1 cut(s)	82
PspPI	GGNCC	2 cut(s)	209, 569
PstNI	CAGNNNCTG	3 cut(s)	151, 614, 758
PsyI	GACNNNGTC	1 cut(s)	98
PvuII	CAGCTG	1 cut(s)	782
RsaI	GTAC	4 cut(s)	255, 314, 318, 468
RsaNI	GTAC	4 cut(s)	254, 313, 317, 467
RseI	CAYNNNNRTG	1 cut(s)	920
SalI	GTCGAC	1 cut(s)	805
SapI	GCTCTTC	1 cut(s)	522
SaqAI	TTAA	4 cut(s)	35, 263, 419, 890
SatI	GCNGC	2 cut(s)	146, 425
Sau3AI	GATC	1 cut(s)	214
Sau96I	GGNCC	2 cut(s)	209, 569
SchI	GAGTC	3 cut(s)	317, 742, 890
ScrFI	CCNGG	4 cut(s)	363, 567, 573, 928
SduI	GDGCHC	3 cut(s)	22, 659, 791
SfaNI	GCATC	2 cut(s)	178, 599
SfcI	CTRYAG	1 cut(s)	479
SmiMI	CAYNNNNRTG	1 cut(s)	920
SnaBI	TACGTA	1 cut(s)	316
Sse9I	AATT	5 cut(s)	46, 405, 458, 519, 601
SsiI	CCGC	1 cut(s)	178
SspI	AATATT	2 cut(s)	68, 876
SspMI	CTAG	1 cut(s)	24
StyD4I	CCNGG	4 cut(s)	361, 565, 571, 926
StyI	CCWWGG	1 cut(s)	58
TaaI	ACNGT	3 cut(s)	17, 77, 483
TaiI	ACGT	2 cut(s)	318, 372
TaqI	TCGA	5 cut(s)	301, 525, 711, 746, 806
TasI	AATT	5 cut(s)	46, 405, 458, 519, 601
TatI	WGTACW	1 cut(s)	253
TfiI	GAWTC	3 cut(s)	611, 716, 755
Tru1I	TTAA	4 cut(s)	35, 263, 419, 890
Tru9I	TTAA	4 cut(s)	35, 263, 419, 890
TseI	GCWGC	2 cut(s)	145, 424
TspDTI	ATGAA	6 cut(s)	161, 381, 468, 729, 753, 910
TspGWI	ACGGA	3 cut(s)	425, 502, 697
Tth111I	GACNNNGTC	1 cut(s)	98
Van91I	CCANNNNNTGG	1 cut(s)	758
XagI	CCTNNNNNAGG	1 cut(s)	27
XmiI	GTMKAC	1 cut(s)	806
XspI	CTAG	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.