Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002558

Physical Location & Seq

Genomic Coordinates Forward (+)

67750071 .. 67751533

Gene Structure 1463 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21661

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGCCAGTCTTTAAGCATGATGTATTTCTTAGTTTTAGAGGGGAGGACACCCGCAAGACTTTTACAAGCCATCTTTATGCGGCTTTAGTTAGTAATCACATCAACACCTACATAGATGATGAAATCGAGAGGGGAGAGGAAATTGCACCAGCCCTTCTCCAAGCAATAGAGGCATCAAAACTTTCCGTAGTCATTTTGTCACAAGGCTATGCTTCTTCCAGATGGTGCTTGAATGAACTCGCTCATATATTGGAATTGAAGGAAAGACACCAACTATCGGTTTTACCCATTTTTTATGGGGTAGATCCATCACATGTACGGAATCAGAGGGAGAGTTATGCAGCTGCATTTGTTCAACATGAGAAACATTTCAAGCAAGACAAGGTGCTCAAGTGGAGGGAGGCTTTAACCAAAGCTTCTGATCTAGCTGGGTTTGATTCACGCAAGACTAGCCCCGATTCCAAGTTAGTTGAGGAAGTTCTGAAAGTTATTCAGAAGAAGTTGAATCGCAAATACTCAAGAGATTTGACCCCACAAGATGTTGGTACGTCCGCCGCTCAATTTGCGCACACAAATGCGTGCGAATTCTCCCTTTTTTGTAATTGTATTATAGTGTCGGTTGATAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

209

Amino Acids

23.74

Weight (kDa)

6.75

Isoelectric Point (pI)

47.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	5 - 174	2.8e-56	TIR domain
TIR_2	PF13676	8 - 104	1.9e-15	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20142
fragaria_vesca	FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730
malus_domestica	MD05G1140000.v1.1
prunus_persica	Prupe.1G120200_v2.0.a1
pyrus_communis	pycom03g08420 pycom04g02910 pycom10g12010 pycom10g12080 pycom10g12100
rosa_chinensis	RchiOBHm_Chr3g0451631 RchiOBHm_Chr5g0026391 RchiOBHm_Chr7g0241711
rosa_laevigata	RLG00000004786 RLG00000004787 RLG00000029480
rosa_multiflora	Rmu_co8097864.1_g000001 Rmu_sc0001689.1_g000015 Rmu_sc0002354.1_g000038 Rmu_sc0003469.1_g000013 Rmu_sc0006326.1_g000044 Rmu_sc0038436.1_g000001 Rmu_sc0043107.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053220 Rroxscaffold_3G00218740 Rroxscaffold_3G00267480 Rroxscaffold_4G00317010 Rroxscaffold_6G00397670 Rroxscaffold_6G00397680
rosa_rugosa	Rorug01G0112600 Rorug05G0000700 Rorug06G0259600 Rorug07G0346700
rosa_samantha	Rh7AG085700
rosa_wichuraiana	Rw1G011340 Rw7G007550 Rw7G042350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	567
AccBSI	CCGCTC	1 cut(s)	557
AciI	CCGC	4 cut(s)	52, 80, 552, 555
AclWI	GGATC	1 cut(s)	299
AcsI	RAATTY	1 cut(s)	584
AfaI	GTAC	2 cut(s)	318, 547
AfiI	CCNNNNNNNGG	1 cut(s)	277
AflIII	ACRYGT	1 cut(s)	313
AgsI	TTSAA	5 cut(s)	232, 259, 356, 373, 505
AluBI	AGCT	4 cut(s)	344, 416, 428, 627
AluI	AGCT	4 cut(s)	344, 416, 428, 627
Alw21I	GWGCWC	1 cut(s)	390
AlwI	GGATC	1 cut(s)	299
ApeKI	GCWGC	2 cut(s)	341, 344
ApoI	RAATTY	1 cut(s)	584
Asp700I	GAANNNNTTC	1 cut(s)	368
AspLEI	GCGC	1 cut(s)	568
Bbv12I	GWGCWC	1 cut(s)	390
BbvI	GCAGC	2 cut(s)	331, 353
BccI	CCATC	3 cut(s)	78, 216, 316
BfaI	CTAG	2 cut(s)	425, 450
BisI	GCNGC	4 cut(s)	81, 342, 345, 555
BlsI	GCNGC	4 cut(s)	82, 343, 346, 556
BmsI	GCATC	1 cut(s)	182
BpuEI	CTTGAG	2 cut(s)	374, 502
Bsc4I	CCNNNNNNNGG	1 cut(s)	277
Bse1I	ACTGG	1 cut(s)	5
BseLI	CCNNNNNNNGG	1 cut(s)	277
BseNI	ACTGG	1 cut(s)	5
BseXI	GCAGC	2 cut(s)	331, 353
BseYI	CCCAGC	1 cut(s)	428
BsiHKAI	GWGCWC	1 cut(s)	390
BslI	CCNNNNNNNGG	1 cut(s)	277
Bsp1286I	GDGCHC	1 cut(s)	390
Bsp143I	GATC	2 cut(s)	304, 421
BspACI	CCGC	4 cut(s)	52, 80, 552, 555
BspPI	GGATC	1 cut(s)	299
BsrBI	CCGCTC	1 cut(s)	557
BsrI	ACTGG	1 cut(s)	5
BssMI	GATC	2 cut(s)	304, 421
BstC8I	GCNNGC	1 cut(s)	580
BstDEI	CTNAG	1 cut(s)	29
BstHHI	GCGC	1 cut(s)	568
BstKTI	GATC	2 cut(s)	307, 424
BstMBI	GATC	2 cut(s)	304, 421
BstMWI	GCNNNNNNNGC	3 cut(s)	170, 450, 563
BstNSI	RCATGY	1 cut(s)	317
BstV1I	GCAGC	2 cut(s)	331, 353
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
Cac8I	GCNNGC	1 cut(s)	580
CfoI	GCGC	1 cut(s)	568
Csp6I	GTAC	2 cut(s)	317, 546
CviAII	CATG	3 cut(s)	17, 314, 359
CviQI	GTAC	2 cut(s)	317, 546
DdeI	CTNAG	1 cut(s)	29
DpnI	GATC	2 cut(s)	306, 423
DpnII	GATC	2 cut(s)	304, 421
EciI	GGCGGA	1 cut(s)	541
EcoRI	GAATTC	1 cut(s)	584
FaeI	CATG	3 cut(s)	20, 317, 362
FatI	CATG	3 cut(s)	16, 313, 358
FauI	CCCGC	1 cut(s)	59
Fnu4HI	GCNGC	4 cut(s)	81, 342, 345, 555
Fsp4HI	GCNGC	4 cut(s)	81, 342, 345, 555
FspBI	CTAG	2 cut(s)	425, 450
FspI	TGCGCA	1 cut(s)	567
GlaI	GCGC	1 cut(s)	567
GluI	GCNGC	4 cut(s)	81, 342, 345, 555
GsaI	CCCAGC	1 cut(s)	432
HhaI	GCGC	1 cut(s)	568
Hin1II	CATG	3 cut(s)	20, 317, 362
Hin6I	GCGC	1 cut(s)	566
HinP1I	GCGC	1 cut(s)	566
HindIII	AAGCTT	1 cut(s)	414
HinfI	GANTC	4 cut(s)	322, 437, 458, 505
Hpy188I	TCNGA	4 cut(s)	327, 421, 483, 495
Hpy188III	TCNNGA	3 cut(s)	127, 219, 519
HpyAV	CCTTC	2 cut(s)	164, 253
HpyCH4IV	ACGT	1 cut(s)	548
HpyCH4V	TGCA	3 cut(s)	146, 341, 347
HpyF10VI	GCNNNNNNNGC	3 cut(s)	170, 450, 563
HpyF3I	CTNAG	1 cut(s)	29
HpySE526I	ACGT	1 cut(s)	548
Hsp92II	CATG	3 cut(s)	20, 317, 362
HspAI	GCGC	1 cut(s)	566
Kzo9I	GATC	2 cut(s)	304, 421
LpnPI	CCDG	4 cut(s)	18, 162, 232, 414
Lsp1109I	GCAGC	2 cut(s)	331, 353
LweI	GCATC	1 cut(s)	182
MaeI	CTAG	2 cut(s)	425, 450
MaeII	ACGT	1 cut(s)	548
MaeIII	GTNAC	1 cut(s)	198
MalI	GATC	2 cut(s)	306, 423
MbiI	CCGCTC	1 cut(s)	557
MboI	GATC	2 cut(s)	304, 421
MboII	GAAGA	2 cut(s)	207, 508
MflI	RGATCY	1 cut(s)	304
MhlI	GDGCHC	1 cut(s)	390
MluCI	AATT	5 cut(s)	141, 254, 560, 584, 601
MnlI	CCTC	9 cut(s)	32, 37, 123, 130, 163, 321, 390, 394, 466
MroXI	GAANNNNTTC	1 cut(s)	368
MseI	TTAA	2 cut(s)	12, 407
MslI	CAYNNNNRTG	2 cut(s)	75, 573
MspA1I	CMGCKG	1 cut(s)	344
MwoI	GCNNNNNNNGC	3 cut(s)	170, 450, 563
NdeII	GATC	2 cut(s)	304, 421
NlaIII	CATG	3 cut(s)	20, 317, 362
NmuCI	GTSAC	1 cut(s)	198
NsbI	TGCGCA	1 cut(s)	567
NspI	RCATGY	1 cut(s)	317
PciI	ACATGT	1 cut(s)	313
PdmI	GAANNNNTTC	1 cut(s)	368
PfeI	GAWTC	4 cut(s)	322, 437, 458, 505
PkrI	GCNGC	4 cut(s)	82, 343, 346, 556
PscI	ACATGT	1 cut(s)	313
PspFI	CCCAGC	1 cut(s)	428
PsuI	RGATCY	1 cut(s)	304
PvuII	CAGCTG	1 cut(s)	344
RsaI	GTAC	2 cut(s)	318, 547
RsaNI	GTAC	2 cut(s)	317, 546
RseI	CAYNNNNRTG	2 cut(s)	75, 573
SaqAI	TTAA	2 cut(s)	12, 407
SatI	GCNGC	4 cut(s)	81, 342, 345, 555
Sau3AI	GATC	2 cut(s)	304, 421
SduI	GDGCHC	1 cut(s)	390
SetI	ASST	7 cut(s)	110, 346, 387, 418, 430, 551, 629
SfaNI	GCATC	1 cut(s)	182
SmiMI	CAYNNNNRTG	2 cut(s)	75, 573
SmlI	CTYRAG	2 cut(s)	389, 517
SmoI	CTYRAG	2 cut(s)	389, 517
Sse9I	AATT	5 cut(s)	141, 254, 560, 584, 601
SsiI	CCGC	4 cut(s)	52, 80, 552, 555
SspMI	CTAG	2 cut(s)	425, 450
TaiI	ACGT	1 cut(s)	551
TaqI	TCGA	1 cut(s)	126
TasI	AATT	5 cut(s)	141, 254, 560, 584, 601
TauI	GCSGC	2 cut(s)	83, 557
TfiI	GAWTC	4 cut(s)	322, 437, 458, 505
Tru1I	TTAA	2 cut(s)	12, 407
Tru9I	TTAA	2 cut(s)	12, 407
TseFI	GTSAC	1 cut(s)	198
TseI	GCWGC	2 cut(s)	341, 344
Tsp45I	GTSAC	1 cut(s)	198
TspDTI	ATGAA	2 cut(s)	135, 249
TspGWI	ACGGA	2 cut(s)	175, 334
XapI	RAATTY	1 cut(s)	584
XceI	RCATGY	1 cut(s)	317
XmnI	GAANNNNTTC	1 cut(s)	368
XspI	CTAG	2 cut(s)	425, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.