Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002558

Physical Location & Seq

Genomic Coordinates Reverse (-)

25536982 .. 25538371

Gene Structure 1390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G011340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGCTTCTCTTTCTCGTTCTTCTGCACTTGGCAGCTTTGAGTATGATGTCTTTCTTAGTTTTAGAGGGCCGGACACCCGCAAGACTTTTACCAGGCAACTTCATAAGGCTTTAGTCAGGAAACAAATTAATACCTTCATAGATGACGAAATTGAGCGTGGAGAGGAAATTGAACCAACCCTTCGCCAAGCAATAGAGGCATCAAACCTTTTAGTAGTCATTTTGTCACAAGGCTATGCTTCTTCCACATCGTGCTTGGATGAACTTGCTTATATATTTGAATGCAAGAAAAGATGCCAACAATCGGTTTTACCCATTTTTTATCGGGTAGATCCATCACAAGTAAGAGATCAGAGGGAGAGTTATGCAGATGCATTTGTTCAGCATGAAGTACGTTTCAAGGGCACGCCAGAAAAGGTGCGCAAGTGGAGGGATGCTTTAATCAAAGCTTCCAAAATAGCTGGGTTTGTTTCACGCAACATTGGCCCCGATTACAAATTAGTTGAGGAATTTGTGAGAGATATTGTGTGGAAGTTGAGCCGCAAATGCATTGCCCCACAAGATGTCGGAGAAGATGTCTGCTTCAAGTGTGGTGGCATAGGACATTGGGCCCAACACTGCCCTTCAGCAGGTGAATGTTTCAAGTGTGGTGGGATAGGACATTGGGCCCAACACTGCCCTTCAGCTGGTGAATGTTTCAAGTGTGGCGGTTTAGGACATTGGGCCCAACACTGCCCTTCACGCTTTAGCAGTGATGAAGATATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

255

Amino Acids

28.81

Weight (kDa)

7.51

Isoelectric Point (pI)

50.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	15 - 181	8.4e-48	TIR domain
TIR_2	PF13676	17 - 126	8.1e-16	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20142
fragaria_vesca	FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730
malus_domestica	MD05G1140000.v1.1
prunus_persica	Prupe.1G120200_v2.0.a1
pyrus_communis	pycom03g08420 pycom04g02910 pycom10g12010 pycom10g12080 pycom10g12100
rosa_chinensis	RchiOBHm_Chr3g0451631 RchiOBHm_Chr5g0026391 RchiOBHm_Chr7g0241711
rosa_laevigata	RLG00000004786 RLG00000004787 RLG00000029480
rosa_multiflora	Rmu_co8097864.1_g000001 Rmu_sc0001689.1_g000015 Rmu_sc0002354.1_g000038 Rmu_sc0003469.1_g000013 Rmu_sc0006326.1_g000044 Rmu_sc0038436.1_g000001 Rmu_sc0043107.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053220 Rroxscaffold_3G00218740 Rroxscaffold_3G00267480 Rroxscaffold_4G00317010 Rroxscaffold_6G00397670 Rroxscaffold_6G00397680
rosa_rugosa	Rorug01G0112600 Rorug05G0000700 Rorug06G0259600 Rorug07G0346700
rosa_samantha	Rh7AG085700
rosa_wichuraiana	Rw1G011340 Rw7G007550 Rw7G042350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	620
Acc16I	TGCGCA	1 cut(s)	422
Acc36I	ACCTGC	1 cut(s)	620
AciI	CCGC	3 cut(s)	79, 541, 708
AclWI	GGATC	1 cut(s)	326
AcsI	RAATTY	1 cut(s)	509
AcuI	CTGAAG	2 cut(s)	609, 666
AdeI	CACNNNGTG	1 cut(s)	252
AfaI	GTAC	1 cut(s)	393
AfiI	CCNNNNNNNGG	3 cut(s)	304, 629, 686
AgsI	TTSAA	6 cut(s)	173, 281, 400, 586, 643, 700
AjnI	CCWGG	1 cut(s)	92
AluBI	AGCT	4 cut(s)	36, 449, 461, 686
AluI	AGCT	4 cut(s)	36, 449, 461, 686
AlwI	GGATC	1 cut(s)	326
AoxI	GGCC	5 cut(s)	68, 484, 609, 666, 723
ApaI	GGGCCC	3 cut(s)	613, 670, 727
ApeKI	GCWGC	1 cut(s)	33
ApoI	RAATTY	1 cut(s)	509
AseI	ATTAAT	1 cut(s)	129
AspLEI	GCGC	1 cut(s)	423
AspS9I	GGNCC	8 cut(s)	68, 485, 609, 610, 666, 667, 723, 724
AsuHPI	GGTGA	2 cut(s)	644, 701
BaeGI	GKGCMC	4 cut(s)	407, 613, 670, 727
BanII	GRGCYC	3 cut(s)	613, 670, 727
BbvI	GCAGC	1 cut(s)	45
BccI	CCATC	1 cut(s)	343
BciT130I	CCWGG	1 cut(s)	94
BfuAI	ACCTGC	1 cut(s)	620
BisI	GCNGC	2 cut(s)	34, 541
BlsI	GCNGC	2 cut(s)	35, 542
Bme1390I	CCNGG	1 cut(s)	94
BmgT120I	GGNCC	8 cut(s)	68, 485, 609, 610, 666, 667, 723, 724
BmiI	GGNNCC	4 cut(s)	487, 611, 668, 725
BmrFI	CCNGG	1 cut(s)	94
BmsI	GCATC	4 cut(s)	209, 284, 361, 424
BsaXI	ACNNNNNCTCC	2 cut(s)	561, 591
Bsc4I	CCNNNNNNNGG	3 cut(s)	304, 629, 686
Bse3DI	GCAATG	1 cut(s)	549
BseBI	CCWGG	1 cut(s)	94
BseGI	GGATG	2 cut(s)	265, 439
BseLI	CCNNNNNNNGG	3 cut(s)	304, 629, 686
BseMI	GCAATG	1 cut(s)	549
BseSI	GKGCMC	4 cut(s)	407, 613, 670, 727
BseXI	GCAGC	1 cut(s)	45
BseYI	CCCAGC	1 cut(s)	461
BsgI	GTGCAG	1 cut(s)	9
BshFI	GGCC	5 cut(s)	70, 486, 611, 668, 725
BsiSI	CCGG	1 cut(s)	71
BslI	CCNNNNNNNGG	3 cut(s)	304, 629, 686
BsmI	GAATGC	1 cut(s)	287
BsnI	GGCC	5 cut(s)	70, 486, 611, 668, 725
Bsp120I	GGGCCC	3 cut(s)	609, 666, 723
Bsp1286I	GDGCHC	4 cut(s)	407, 613, 670, 727
Bsp143I	GATC	2 cut(s)	331, 349
BspACI	CCGC	3 cut(s)	79, 541, 708
BspANI	GGCC	5 cut(s)	70, 486, 611, 668, 725
BspLI	GGNNCC	4 cut(s)	487, 611, 668, 725
BspMI	ACCTGC	1 cut(s)	620
BspPI	GGATC	1 cut(s)	326
BsrDI	GCAATG	1 cut(s)	549
BssMI	GATC	2 cut(s)	331, 349
Bst2UI	CCWGG	1 cut(s)	94
BstC8I	GCNNGC	1 cut(s)	407
BstDEI	CTNAG	1 cut(s)	56
BstENI	CCTNNNNNAGG	1 cut(s)	627
BstF5I	GGATG	2 cut(s)	265, 439
BstHHI	GCGC	1 cut(s)	423
BstKTI	GATC	2 cut(s)	334, 352
BstMBI	GATC	2 cut(s)	331, 349
BstMWI	GCNNNNNNNGC	4 cut(s)	197, 483, 546, 741
BstNI	CCWGG	1 cut(s)	94
BstSCI	CCNGG	1 cut(s)	92
BstSLI	GKGCMC	4 cut(s)	407, 613, 670, 727
BstV1I	GCAGC	1 cut(s)	45
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BsuRI	GGCC	5 cut(s)	70, 486, 611, 668, 725
BtsCI	GGATG	2 cut(s)	265, 439
BtsI	GCAGTG	4 cut(s)	616, 673, 730, 757
BtsIMutI	CAGTG	4 cut(s)	616, 673, 730, 757
BveI	ACCTGC	1 cut(s)	620
Cac8I	GCNNGC	1 cut(s)	407
CfoI	GCGC	1 cut(s)	423
Cfr13I	GGNCC	8 cut(s)	68, 485, 609, 610, 666, 667, 723, 724
Csp6I	GTAC	1 cut(s)	392
CspCI	CAANNNNNGTGG	4 cut(s)	574, 609, 631, 666
CviAII	CATG	1 cut(s)	386
CviQI	GTAC	1 cut(s)	392
DdeI	CTNAG	1 cut(s)	56
DpnI	GATC	2 cut(s)	333, 351
DpnII	GATC	2 cut(s)	331, 349
DraIII	CACNNNGTG	1 cut(s)	252
Eco24I	GRGCYC	3 cut(s)	613, 670, 727
Eco57I	CTGAAG	2 cut(s)	609, 666
EcoNI	CCTNNNNNAGG	1 cut(s)	627
EcoRII	CCWGG	1 cut(s)	92
EcoT22I	ATGCAT	2 cut(s)	376, 551
EcoT38I	GRGCYC	3 cut(s)	613, 670, 727
FaeI	CATG	1 cut(s)	389
FatI	CATG	1 cut(s)	385
FauI	CCCGC	1 cut(s)	86
Fnu4HI	GCNGC	2 cut(s)	34, 541
FokI	GGATG	2 cut(s)	272, 446
FriOI	GRGCYC	3 cut(s)	613, 670, 727
Fsp4HI	GCNGC	2 cut(s)	34, 541
FspI	TGCGCA	1 cut(s)	422
GlaI	GCGC	1 cut(s)	422
GluI	GCNGC	2 cut(s)	34, 541
GsaI	CCCAGC	1 cut(s)	465
HaeIII	GGCC	5 cut(s)	70, 486, 611, 668, 725
HapII	CCGG	1 cut(s)	71
HhaI	GCGC	1 cut(s)	423
Hin1II	CATG	1 cut(s)	389
Hin6I	GCGC	1 cut(s)	421
HinP1I	GCGC	1 cut(s)	421
HindIII	AAGCTT	1 cut(s)	447
HpaII	CCGG	1 cut(s)	71
HphI	GGTGA	2 cut(s)	644, 701
Hpy188I	TCNGA	2 cut(s)	354, 569
Hpy188III	TCNNGA	1 cut(s)	118
HpyAV	CCTTC	5 cut(s)	145, 191, 633, 690, 747
HpyCH4IV	ACGT	1 cut(s)	394
HpyCH4V	TGCA	5 cut(s)	26, 285, 368, 374, 549
HpyF10VI	GCNNNNNNNGC	4 cut(s)	197, 483, 546, 741
HpyF3I	CTNAG	1 cut(s)	56
HpySE526I	ACGT	1 cut(s)	394
Hsp92II	CATG	1 cut(s)	389
HspAI	GCGC	1 cut(s)	421
Kzo9I	GATC	2 cut(s)	331, 349
LpnPI	CCDG	8 cut(s)	79, 84, 103, 106, 423, 447, 615, 672
Lsp1109I	GCAGC	1 cut(s)	45
LweI	GCATC	4 cut(s)	209, 284, 361, 424
MaeII	ACGT	1 cut(s)	394
MaeIII	GTNAC	1 cut(s)	225
MalI	GATC	2 cut(s)	333, 351
MboI	GATC	2 cut(s)	331, 349
MboII	GAAGA	3 cut(s)	12, 234, 584
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	4 cut(s)	407, 613, 670, 727
MluCI	AATT	5 cut(s)	126, 150, 168, 497, 509
MmeI	TCCRAC	1 cut(s)	547
MnlI	CCTC	6 cut(s)	59, 157, 190, 348, 423, 499
Mph1103I	ATGCAT	2 cut(s)	376, 551
MseI	TTAA	2 cut(s)	129, 440
MspA1I	CMGCKG	1 cut(s)	686
MspI	CCGG	1 cut(s)	71
MspR9I	CCNGG	1 cut(s)	94
Mva1269I	GAATGC	1 cut(s)	287
MvaI	CCWGG	1 cut(s)	94
MwoI	GCNNNNNNNGC	4 cut(s)	197, 483, 546, 741
NdeII	GATC	2 cut(s)	331, 349
NlaIII	CATG	1 cut(s)	389
NlaIV	GGNNCC	4 cut(s)	487, 611, 668, 725
NmuCI	GTSAC	1 cut(s)	225
NsbI	TGCGCA	1 cut(s)	422
NsiI	ATGCAT	2 cut(s)	376, 551
PaqCI	CACCTGC	1 cut(s)	620
PctI	GAATGC	1 cut(s)	287
PkrI	GCNGC	2 cut(s)	35, 542
PshBI	ATTAAT	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	92
PspFI	CCCAGC	1 cut(s)	461
PspGI	CCWGG	1 cut(s)	92
PspN4I	GGNNCC	4 cut(s)	487, 611, 668, 725
PspOMI	GGGCCC	3 cut(s)	609, 666, 723
PspPI	GGNCC	8 cut(s)	68, 485, 609, 610, 666, 667, 723, 724
PsuI	RGATCY	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	686
RsaI	GTAC	1 cut(s)	393
RsaNI	GTAC	1 cut(s)	392
SaqAI	TTAA	2 cut(s)	129, 440
SatI	GCNGC	2 cut(s)	34, 541
Sau3AI	GATC	2 cut(s)	331, 349
Sau96I	GGNCC	8 cut(s)	68, 485, 609, 610, 666, 667, 723, 724
ScrFI	CCNGG	1 cut(s)	94
SduI	GDGCHC	4 cut(s)	407, 613, 670, 727
SetI	ASST	9 cut(s)	38, 137, 210, 397, 420, 451, 463, 634, 688
SfaNI	GCATC	4 cut(s)	209, 284, 361, 424
Sse9I	AATT	5 cut(s)	126, 150, 168, 497, 509
SsiI	CCGC	3 cut(s)	79, 541, 708
StyD4I	CCNGG	1 cut(s)	92
TaiI	ACGT	1 cut(s)	397
TasI	AATT	5 cut(s)	126, 150, 168, 497, 509
TauI	GCSGC	1 cut(s)	543
Tru1I	TTAA	2 cut(s)	129, 440
Tru9I	TTAA	2 cut(s)	129, 440
TscAI	CASTG	4 cut(s)	623, 680, 737, 757
TseFI	GTSAC	1 cut(s)	225
TseI	GCWGC	1 cut(s)	33
Tsp45I	GTSAC	1 cut(s)	225
TspDTI	ATGAA	4 cut(s)	92, 127, 276, 402
TspRI	CASTG	4 cut(s)	623, 680, 737, 757
VspI	ATTAAT	1 cut(s)	129
XagI	CCTNNNNNAGG	1 cut(s)	627
XapI	RAATTY	1 cut(s)	509
XcmI	CCANNNNNNNNNTGG	1 cut(s)	253
Zsp2I	ATGCAT	2 cut(s)	376, 551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.