Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002558

Physical Location & Seq

Genomic Coordinates Forward (+)

62266631 .. 62268823

Gene Structure 2193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004786

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGCCTGTAATGGAGCCTCTTCTTCCTCTGGTTCTCTCACCCCTCCAAGCAGACATGATGTGTTTTTGAGTTTTAGAGGTACAGATACGCGCTCCGGTTTTACATATAATCTGTACAAGGCTTTAGATAGAGAGAAAATCAAAACTTTCTTTGATGATCGTACGCTCAAGAGAGGAGAGAACATATCAGCAGCACTTCTTCACGCAATAGAATTTTCAAGGATTTCTGTGGTGATATGCTCTGAAAACTACGCTTCGTCAAGTTGGTGCTTGGATGAACTCGTCAAGATCCTTGAATGTCAAAAATCAAAGCAGCAGATTGTTATTCCAGTATTTTACAAAGTGGATCCTGCACATGTACGACATCAAATTGGTAGTTTTGGTCAGGCCCTTACCGTCTTGAAATACAACAAGGACAAGGTCCCCGGATGGAGGATAGCTCTTACACAAGTAGCAAATTTGTCTGGATGGACTTATGTGGACGGGTATGAATCTGATTTTATTGAGAAAATTGTTAAAGAGATATTAGATGTGGTTGGCCTCGACAACTATAAGAAGAACGAAGATGTGGCCAGCCTCAACCAACAAAACAAAAAAACAGATTTAACCGGTCTTAATGACCAAACGAAGAACAACAATTGGGTCGATGTTTACAATCAGACTTTGCTTCAACTCCAGAAGAATATAGATGGGGCAGCCGTTTATAATAAGGCATACCTTCAACTCCAAGAGAATGTAGTTGAGGATGAGGTCTATAACAAGACCTTCCTTCGACTCCAGAAGGAATCAGAGGAGGCAGACGTCTACAACAAGACCTTCCTTCGGCTCCAGAAGGAATCACAGGATGCGGACGTCTACAACAAGACCTTCATTCGGCTCCAGAAGGAATCAGAGGAGGCGGACGTCTACAATAAGACATTACTTCGACTCCAGAAGGAATCCGAAGAGGCGGACGTCTACAACAAGACATTACTTCGACTCCAGAAGGAATCCGAGGAGGCGGACGTCTACAACAAGACATTACTTCGACTCCAGAAGGAATCCGAGGAGGCGGACGTCTACAACAAGACATTACTTCGGCTCCAGAGGGAATCACAGGAGGCGGACGTCTACAACAAGACATTACTTCGACTCCAGAAGGAATCCGAGGAGGCGGACGTCTACAATAAGACATTACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

394

Amino Acids

45.36

Weight (kDa)

5.47

Isoelectric Point (pI)

56.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	19 - 203	1.6e-55	TIR domain
TIR_2	PF13676	21 - 117	1.4e-15	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20142
fragaria_vesca	FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730
malus_domestica	MD05G1140000.v1.1
prunus_persica	Prupe.1G120200_v2.0.a1
pyrus_communis	pycom03g08420 pycom04g02910 pycom10g12010 pycom10g12080 pycom10g12100
rosa_chinensis	RchiOBHm_Chr3g0451631 RchiOBHm_Chr5g0026391 RchiOBHm_Chr7g0241711
rosa_laevigata	RLG00000004786 RLG00000004787 RLG00000029480
rosa_multiflora	Rmu_co8097864.1_g000001 Rmu_sc0001689.1_g000015 Rmu_sc0002354.1_g000038 Rmu_sc0003469.1_g000013 Rmu_sc0006326.1_g000044 Rmu_sc0038436.1_g000001 Rmu_sc0043107.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053220 Rroxscaffold_3G00218740 Rroxscaffold_3G00267480 Rroxscaffold_4G00317010 Rroxscaffold_6G00397670 Rroxscaffold_6G00397680
rosa_rugosa	Rorug01G0112600 Rorug05G0000700 Rorug06G0259600 Rorug07G0346700
rosa_samantha	Rh7AG085700
rosa_wichuraiana	Rw1G011340 Rw7G007550 Rw7G042350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	705
AatII	GACGTC	8 cut(s)	804, 855, 906, 957, 1008, 1059, 1110, 1161
AccI	GTMKAC	8 cut(s)	804, 855, 906, 957, 1008, 1059, 1110, 1161
AccII	CGCG	1 cut(s)	91
AciI	CCGC	7 cut(s)	848, 899, 950, 1001, 1052, 1103, 1154
AclWI	GGATC	3 cut(s)	283, 341, 354
AcoI	YGGCCR	1 cut(s)	570
AcsI	RAATTY	2 cut(s)	212, 457
AcyI	GRCGYC	8 cut(s)	801, 852, 903, 954, 1005, 1056, 1107, 1158
AfaI	GTAC	4 cut(s)	82, 116, 163, 360
AfiI	CCNNNNNNNGG	3 cut(s)	432, 822, 873
AflIII	ACRYGT	1 cut(s)	355
AgeI	ACCGGT	1 cut(s)	608
AgsI	TTSAA	5 cut(s)	219, 296, 403, 671, 722
AluBI	AGCT	1 cut(s)	440
AluI	AGCT	1 cut(s)	440
AlwI	GGATC	3 cut(s)	283, 341, 354
AoxI	GGCC	4 cut(s)	3, 387, 538, 570
ApeKI	GCWGC	3 cut(s)	191, 313, 695
ApoI	RAATTY	2 cut(s)	212, 457
AsiGI	ACCGGT	1 cut(s)	608
AspLEI	GCGC	1 cut(s)	93
AspS9I	GGNCC	2 cut(s)	388, 421
AsuC2I	CCSGG	1 cut(s)	426
AsuHPI	GGTGA	2 cut(s)	31, 244
AvaII	GGWCC	1 cut(s)	421
BalI	TGGCCA	1 cut(s)	572
BamHI	GGATCC	1 cut(s)	346
BbvI	GCAGC	3 cut(s)	203, 325, 707
BccI	CCATC	3 cut(s)	423, 462, 683
BceAI	ACGGC	1 cut(s)	683
BcnI	CCSGG	1 cut(s)	426
BisI	GCNGC	3 cut(s)	192, 314, 696
BlsI	GCNGC	3 cut(s)	193, 315, 697
Bme1390I	CCNGG	1 cut(s)	426
Bme18I	GGWCC	1 cut(s)	421
BmgT120I	GGNCC	2 cut(s)	388, 421
BmiI	GGNNCC	6 cut(s)	16, 348, 423, 827, 878, 1082
BmrFI	CCNGG	1 cut(s)	426
BmsI	GCATC	1 cut(s)	835
BplI	GAGNNNNNCTC	2 cut(s)	424, 456
BpmI	CTGGAG	9 cut(s)	659, 761, 812, 863, 914, 965, 1016, 1067, 1118
BpuEI	CTTGAG	1 cut(s)	152
BpuMI	CCSGG	1 cut(s)	426
BsaHI	GRCGYC	8 cut(s)	801, 852, 903, 954, 1005, 1056, 1107, 1158
BsaJI	CCNNGG	4 cut(s)	424, 993, 1044, 1146
BsaWI	WCCGGW	2 cut(s)	95, 608
Bsc4I	CCNNNNNNNGG	3 cut(s)	432, 822, 873
Bse118I	RCCGGY	1 cut(s)	608
Bse1I	ACTGG	1 cut(s)	329
BseDI	CCNNGG	4 cut(s)	424, 993, 1044, 1146
BseGI	GGATG	5 cut(s)	280, 434, 473, 751, 850
BseLI	CCNNNNNNNGG	3 cut(s)	432, 822, 873
BseNI	ACTGG	1 cut(s)	329
BseRI	GAGGAG	6 cut(s)	189, 806, 908, 1010, 1061, 1163
BseXI	GCAGC	3 cut(s)	203, 325, 707
BsgI	GTGCAG	1 cut(s)	336
Bsh1236I	CGCG	1 cut(s)	91
BshFI	GGCC	4 cut(s)	5, 389, 540, 572
BshTI	ACCGGT	1 cut(s)	608
BsiSI	CCGG	3 cut(s)	96, 426, 609
BsiWI	CGTACG	1 cut(s)	161
BslFI	GGGAC	1 cut(s)	407
BslI	CCNNNNNNNGG	3 cut(s)	432, 822, 873
BsmFI	GGGAC	1 cut(s)	407
BsnI	GGCC	4 cut(s)	5, 389, 540, 572
Bsp1407I	TGTACA	1 cut(s)	114
Bsp143I	GATC	3 cut(s)	157, 288, 346
BspACI	CCGC	7 cut(s)	848, 899, 950, 1001, 1052, 1103, 1154
BspANI	GGCC	4 cut(s)	5, 389, 540, 572
BspFNI	CGCG	1 cut(s)	91
BspLI	GGNNCC	6 cut(s)	16, 348, 423, 827, 878, 1082
BspPI	GGATC	3 cut(s)	283, 341, 354
BsrFI	RCCGGY	1 cut(s)	608
BsrGI	TGTACA	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	329
BssAI	RCCGGY	1 cut(s)	608
BssECI	CCNNGG	4 cut(s)	424, 993, 1044, 1146
BssMI	GATC	3 cut(s)	157, 288, 346
BssNI	GRCGYC	8 cut(s)	801, 852, 903, 954, 1005, 1056, 1107, 1158
Bst4CI	ACNGT	1 cut(s)	397
Bst6I	CTCTTC	2 cut(s)	25, 939
BstACI	GRCGYC	8 cut(s)	801, 852, 903, 954, 1005, 1056, 1107, 1158
BstAUI	TGTACA	1 cut(s)	114
BstC8I	GCNNGC	1 cut(s)	574
BstF5I	GGATG	5 cut(s)	280, 434, 473, 751, 850
BstFNI	CGCG	1 cut(s)	91
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	3 cut(s)	160, 291, 349
BstMBI	GATC	3 cut(s)	157, 288, 346
BstNSI	RCATGY	1 cut(s)	359
BstSCI	CCNGG	1 cut(s)	424
BstUI	CGCG	1 cut(s)	91
BstV1I	GCAGC	3 cut(s)	203, 325, 707
BstX2I	RGATCY	2 cut(s)	288, 346
BstYI	RGATCY	2 cut(s)	288, 346
BsuRI	GGCC	4 cut(s)	5, 389, 540, 572
BtsCI	GGATG	5 cut(s)	280, 434, 473, 751, 850
Cac8I	GCNNGC	1 cut(s)	574
CfoI	GCGC	1 cut(s)	93
Cfr10I	RCCGGY	1 cut(s)	608
Cfr13I	GGNCC	2 cut(s)	388, 421
Csp6I	GTAC	4 cut(s)	81, 115, 162, 359
CspAI	ACCGGT	1 cut(s)	608
CviAII	CATG	2 cut(s)	56, 356
CviQI	GTAC	4 cut(s)	81, 115, 162, 359
DpnI	GATC	3 cut(s)	159, 290, 348
DpnII	GATC	3 cut(s)	157, 288, 346
EaeI	YGGCCR	1 cut(s)	570
Eam1104I	CTCTTC	2 cut(s)	25, 939
EarI	CTCTTC	2 cut(s)	25, 939
EciI	GGCGGA	6 cut(s)	914, 965, 1016, 1067, 1118, 1169
Eco47I	GGWCC	1 cut(s)	421
EcoO109I	RGGNCCY	2 cut(s)	388, 421
FaeI	CATG	2 cut(s)	59, 359
FaqI	GGGAC	1 cut(s)	407
FatI	CATG	2 cut(s)	55, 355
FblI	GTMKAC	8 cut(s)	804, 855, 906, 957, 1008, 1059, 1110, 1161
Fnu4HI	GCNGC	3 cut(s)	192, 314, 696
FokI	GGATG	5 cut(s)	287, 441, 480, 758, 857
Fsp4HI	GCNGC	3 cut(s)	192, 314, 696
GlaI	GCGC	1 cut(s)	92
GluI	GCNGC	3 cut(s)	192, 314, 696
GsuI	CTGGAG	9 cut(s)	659, 761, 812, 863, 914, 965, 1016, 1067, 1118
HaeIII	GGCC	4 cut(s)	5, 389, 540, 572
HapII	CCGG	3 cut(s)	96, 426, 609
HhaI	GCGC	1 cut(s)	93
Hin1I	GRCGYC	8 cut(s)	801, 852, 903, 954, 1005, 1056, 1107, 1158
Hin1II	CATG	2 cut(s)	59, 359
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HpaII	CCGG	3 cut(s)	96, 426, 609
HphI	GGTGA	2 cut(s)	31, 244
Hpy188I	TCNGA	9 cut(s)	244, 496, 660, 790, 892, 943, 994, 1045, 1147
HpyCH4III	ACNGT	1 cut(s)	397
HpyCH4IV	ACGT	8 cut(s)	801, 852, 903, 954, 1005, 1056, 1107, 1158
HpyCH4V	TGCA	1 cut(s)	353
HpySE526I	ACGT	8 cut(s)	801, 852, 903, 954, 1005, 1056, 1107, 1158
Hsp92I	GRCGYC	8 cut(s)	801, 852, 903, 954, 1005, 1056, 1107, 1158
Hsp92II	CATG	2 cut(s)	59, 359
HspAI	GCGC	1 cut(s)	91
Kzo9I	GATC	3 cut(s)	157, 288, 346
LmnI	GCTCC	5 cut(s)	14, 98, 831, 882, 1086
Lsp1109I	GCAGC	3 cut(s)	203, 325, 707
LweI	GCATC	1 cut(s)	835
MaeII	ACGT	8 cut(s)	801, 852, 903, 954, 1005, 1056, 1107, 1158
MalI	GATC	3 cut(s)	159, 290, 348
MboI	GATC	3 cut(s)	157, 288, 346
MboII	GAAGA	8 cut(s)	12, 15, 191, 568, 575, 640, 691, 956
MfeI	CAATTG	1 cut(s)	637
MflI	RGATCY	2 cut(s)	288, 346
MlsI	TGGCCA	1 cut(s)	572
MluCI	AATT	5 cut(s)	212, 369, 457, 510, 637
MluNI	TGGCCA	1 cut(s)	572
MlyI	GAGTC	5 cut(s)	768, 921, 972, 1023, 1125
Mox20I	TGGCCA	1 cut(s)	572
MscI	TGGCCA	1 cut(s)	572
MseI	TTAA	3 cut(s)	516, 605, 615
Msp20I	TGGCCA	1 cut(s)	572
MspI	CCGG	3 cut(s)	96, 426, 609
MspR9I	CCNGG	1 cut(s)	426
MunI	CAATTG	1 cut(s)	637
MvnI	CGCG	1 cut(s)	91
NciI	CCSGG	1 cut(s)	426
NdeII	GATC	3 cut(s)	157, 288, 346
NlaIII	CATG	2 cut(s)	59, 359
NlaIV	GGNNCC	6 cut(s)	16, 348, 423, 827, 878, 1082
NspI	RCATGY	1 cut(s)	359
PciI	ACATGT	1 cut(s)	355
PfeI	GAWTC	9 cut(s)	491, 785, 836, 887, 938, 989, 1040, 1091, 1142
Pfl23II	CGTACG	1 cut(s)	161
PflFI	GACNNNGTC	1 cut(s)	419
PinAI	ACCGGT	1 cut(s)	608
PkrI	GCNGC	3 cut(s)	193, 315, 697
PleI	GAGTC	5 cut(s)	768, 921, 972, 1023, 1125
PpsI	GAGTC	5 cut(s)	768, 921, 972, 1023, 1125
PpuMI	RGGWCCY	1 cut(s)	421
PscI	ACATGT	1 cut(s)	355
PsiI	TTATAA	1 cut(s)	705
Psp5II	RGGWCCY	1 cut(s)	421
PspLI	CGTACG	1 cut(s)	161
PspN4I	GGNNCC	6 cut(s)	16, 348, 423, 827, 878, 1082
PspPI	GGNCC	2 cut(s)	388, 421
PspPPI	RGGWCCY	1 cut(s)	421
PsuI	RGATCY	2 cut(s)	288, 346
PsyI	GACNNNGTC	1 cut(s)	419
RsaI	GTAC	4 cut(s)	82, 116, 163, 360
RsaNI	GTAC	4 cut(s)	81, 115, 162, 359
SaqAI	TTAA	3 cut(s)	516, 605, 615
SatI	GCNGC	3 cut(s)	192, 314, 696
Sau3AI	GATC	3 cut(s)	157, 288, 346
Sau96I	GGNCC	2 cut(s)	388, 421
SchI	GAGTC	5 cut(s)	768, 921, 972, 1023, 1125
ScrFI	CCNGG	1 cut(s)	426
SfaNI	GCATC	1 cut(s)	835
SinI	GGWCC	1 cut(s)	421
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	5 cut(s)	212, 369, 457, 510, 637
SsiI	CCGC	7 cut(s)	848, 899, 950, 1001, 1052, 1103, 1154
StyD4I	CCNGG	1 cut(s)	424
TaaI	ACNGT	1 cut(s)	397
TaiI	ACGT	8 cut(s)	804, 855, 906, 957, 1008, 1059, 1110, 1161
TaqI	TCGA	7 cut(s)	543, 645, 772, 925, 976, 1027, 1129
TasI	AATT	5 cut(s)	212, 369, 457, 510, 637
TatI	WGTACW	1 cut(s)	114
TfiI	GAWTC	9 cut(s)	491, 785, 836, 887, 938, 989, 1040, 1091, 1142
Tru1I	TTAA	3 cut(s)	516, 605, 615
Tru9I	TTAA	3 cut(s)	516, 605, 615
TseI	GCWGC	3 cut(s)	191, 313, 695
TspDTI	ATGAA	3 cut(s)	291, 504, 859
Tth111I	GACNNNGTC	1 cut(s)	419
VpaK11BI	GGWCC	1 cut(s)	421
XapI	RAATTY	2 cut(s)	212, 457
XceI	RCATGY	1 cut(s)	359
XmiI	GTMKAC	8 cut(s)	804, 855, 906, 957, 1008, 1059, 1110, 1161
ZraI	GACGTC	8 cut(s)	802, 853, 904, 955, 1006, 1057, 1108, 1159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.