Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8097864.1

Orthogroup ID

OG0002558

Physical Location & Seq

Genomic Coordinates Reverse (-)

35 .. 553

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8097864.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

atgaatatacaggttatgaatatggctgcttcttcttctacggctgctgatgttctccctcagtatgacgtctttcttagtttcagaggtgaggacacccgccttaattttatcagccatctctatgctgctttggagcggaaacaaatccatacctacatggatgacaagtcacttgagtcaggagatgaaattggacctgccttattgacagcaatcgagcaatccaagctttcgataatcattttctcaaaacactatgcttcttcgtcatggtgcttagatgaacttgtgcatatactgaaatgtaaagaagcatatggacagcttgttgtacccgttttctatgacattgatccttcagatgtgcggtggcagaaacggacttatgcagatgcatttgcagttcttgaagagaagttcaaagacaacagggacaagctgggcaagtggaaggatgctgtgacaacagcagccaatctttctgggtttgattcacaatcacaaaatatcaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIR

Protein Analysis

172

Amino Acids

19.48

Weight (kDa)

5.34

Isoelectric Point (pI)

60.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20142
fragaria_vesca	FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730
malus_domestica	MD05G1140000.v1.1
prunus_persica	Prupe.1G120200_v2.0.a1
pyrus_communis	pycom03g08420 pycom04g02910 pycom10g12010 pycom10g12080 pycom10g12100
rosa_chinensis	RchiOBHm_Chr3g0451631 RchiOBHm_Chr5g0026391 RchiOBHm_Chr7g0241711
rosa_laevigata	RLG00000004786 RLG00000004787 RLG00000029480
rosa_multiflora	Rmu_co8097864.1_g000001 Rmu_sc0001689.1_g000015 Rmu_sc0002354.1_g000038 Rmu_sc0003469.1_g000013 Rmu_sc0006326.1_g000044 Rmu_sc0038436.1_g000001 Rmu_sc0043107.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053220 Rroxscaffold_3G00218740 Rroxscaffold_3G00267480 Rroxscaffold_4G00317010 Rroxscaffold_6G00397670 Rroxscaffold_6G00397680
rosa_rugosa	Rorug01G0112600 Rorug05G0000700 Rorug06G0259600 Rorug07G0346700
rosa_samantha	Rh7AG085700
rosa_wichuraiana	Rw1G011340 Rw7G007550 Rw7G042350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	72
Acc36I	ACCTGC	1 cut(s)	208
AccBSI	CCGCTC	1 cut(s)	139
AciI	CCGC	3 cut(s)	100, 139, 370
AclWI	GGATC	1 cut(s)	350
AcuI	CTGAAG	1 cut(s)	345
AcyI	GRCGYC	1 cut(s)	69
AfaI	GTAC	1 cut(s)	336
AgsI	TTSAA	2 cut(s)	413, 424
AluBI	AGCT	3 cut(s)	232, 328, 442
AluI	AGCT	3 cut(s)	232, 328, 442
AlwI	GGATC	1 cut(s)	350
ApeKI	GCWGC	4 cut(s)	26, 44, 128, 473
AspS9I	GGNCC	1 cut(s)	197
AsuHPI	GGTGA	1 cut(s)	101
AvaII	GGWCC	1 cut(s)	197
BbvI	GCAGC	4 cut(s)	13, 31, 115, 485
BccI	CCATC	1 cut(s)	126
BceAI	ACGGC	1 cut(s)	57
BfuAI	ACCTGC	1 cut(s)	208
BisI	GCNGC	4 cut(s)	27, 45, 129, 474
BlsI	GCNGC	4 cut(s)	28, 46, 130, 475
Bme18I	GGWCC	1 cut(s)	197
BmgT120I	GGNCC	1 cut(s)	197
BmsI	GCATC	2 cut(s)	385, 448
BpuEI	CTTGAG	1 cut(s)	197
BsaHI	GRCGYC	1 cut(s)	69
BseGI	GGATG	2 cut(s)	169, 463
BseMII	CTCAG	1 cut(s)	74
BseXI	GCAGC	4 cut(s)	13, 31, 115, 485
BseYI	CCCAGC	1 cut(s)	442
BslFI	GGGAC	1 cut(s)	449
BsmFI	GGGAC	1 cut(s)	449
Bsp143I	GATC	1 cut(s)	355
BspACI	CCGC	3 cut(s)	100, 139, 370
BspCNI	CTCAG	1 cut(s)	73
BspMI	ACCTGC	1 cut(s)	208
BspPI	GGATC	1 cut(s)	350
BsrBI	CCGCTC	1 cut(s)	139
BssMI	GATC	1 cut(s)	355
BssNI	GRCGYC	1 cut(s)	69
Bst6I	CTCTTC	1 cut(s)	408
BstACI	GRCGYC	1 cut(s)	69
BstDEI	CTNAG	3 cut(s)	60, 77, 280
BstF5I	GGATG	2 cut(s)	169, 463
BstKTI	GATC	1 cut(s)	358
BstMBI	GATC	1 cut(s)	355
BstMWI	GCNNNNNNNGC	1 cut(s)	229
BstV1I	GCAGC	4 cut(s)	13, 31, 115, 485
BtsCI	GGATG	2 cut(s)	169, 463
BveI	ACCTGC	1 cut(s)	208
Cfr13I	GGNCC	1 cut(s)	197
Csp6I	GTAC	1 cut(s)	335
CviAII	CATG	2 cut(s)	160, 273
CviJI	RGCY	7 cut(s)	26, 44, 117, 232, 328, 442, 476
CviKI_1	RGCY	7 cut(s)	26, 44, 117, 232, 328, 442, 476
CviQI	GTAC	1 cut(s)	335
DdeI	CTNAG	3 cut(s)	60, 77, 280
DpnI	GATC	1 cut(s)	357
DpnII	GATC	1 cut(s)	355
Eam1104I	CTCTTC	1 cut(s)	408
EarI	CTCTTC	1 cut(s)	408
Eco47I	GGWCC	1 cut(s)	197
Eco57I	CTGAAG	1 cut(s)	345
EcoT22I	ATGCAT	1 cut(s)	400
FaeI	CATG	2 cut(s)	163, 276
FaqI	GGGAC	1 cut(s)	449
FatI	CATG	2 cut(s)	159, 272
FauI	CCCGC	1 cut(s)	107
FauNDI	CATATG	1 cut(s)	319
Fnu4HI	GCNGC	4 cut(s)	27, 45, 129, 474
FokI	GGATG	2 cut(s)	176, 470
Fsp4HI	GCNGC	4 cut(s)	27, 45, 129, 474
GluI	GCNGC	4 cut(s)	27, 45, 129, 474
GsaI	CCCAGC	1 cut(s)	446
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	2 cut(s)	163, 276
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	2 cut(s)	179, 494
HphI	GGTGA	1 cut(s)	101
Hpy188I	TCNGA	2 cut(s)	86, 364
Hpy188III	TCNNGA	2 cut(s)	183, 410
HpyAV	CCTTC	2 cut(s)	369, 448
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	4 cut(s)	295, 392, 398, 404
HpyF10VI	GCNNNNNNNGC	1 cut(s)	229
HpyF3I	CTNAG	3 cut(s)	60, 77, 280
HpySE526I	ACGT	1 cut(s)	69
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	2 cut(s)	163, 276
Kzo9I	GATC	1 cut(s)	355
LmnI	GCTCC	1 cut(s)	136
LpnPI	CCDG	5 cut(s)	168, 213, 418, 428, 471
Lsp1109I	GCAGC	4 cut(s)	13, 31, 115, 485
LweI	GCATC	2 cut(s)	385, 448
MaeII	ACGT	1 cut(s)	69
MaeIII	GTNAC	2 cut(s)	171, 463
MalI	GATC	1 cut(s)	357
MbiI	CCGCTC	1 cut(s)	139
MboI	GATC	1 cut(s)	355
MboII	GAAGA	4 cut(s)	24, 27, 258, 425
MluCI	AATT	2 cut(s)	106, 192
MlyI	GAGTC	1 cut(s)	188
MnlI	CCTC	3 cut(s)	69, 80, 85
Mph1103I	ATGCAT	1 cut(s)	400
MseI	TTAA	1 cut(s)	105
MslI	CAYNNNNRTG	1 cut(s)	123
MwoI	GCNNNNNNNGC	1 cut(s)	229
NdeI	CATATG	1 cut(s)	319
NdeII	GATC	1 cut(s)	355
NlaIII	CATG	2 cut(s)	163, 276
NmuCI	GTSAC	2 cut(s)	171, 463
NsiI	ATGCAT	1 cut(s)	400
PfeI	GAWTC	1 cut(s)	494
PkrI	GCNGC	4 cut(s)	28, 46, 130, 475
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
PspFI	CCCAGC	1 cut(s)	442
PspPI	GGNCC	1 cut(s)	197
RsaI	GTAC	1 cut(s)	336
RsaNI	GTAC	1 cut(s)	335
RseI	CAYNNNNRTG	1 cut(s)	123
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	4 cut(s)	27, 45, 129, 474
Sau3AI	GATC	1 cut(s)	355
Sau96I	GGNCC	1 cut(s)	197
SchI	GAGTC	1 cut(s)	188
SetI	ASST	8 cut(s)	15, 72, 91, 158, 202, 234, 330, 444
SfaNI	GCATC	2 cut(s)	385, 448
SinI	GGWCC	1 cut(s)	197
SmiMI	CAYNNNNRTG	1 cut(s)	123
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	2 cut(s)	106, 192
SsiI	CCGC	3 cut(s)	100, 139, 370
TaiI	ACGT	1 cut(s)	72
TaqI	TCGA	2 cut(s)	219, 236
TasI	AATT	2 cut(s)	106, 192
TfiI	GAWTC	1 cut(s)	494
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TseFI	GTSAC	2 cut(s)	171, 463
TseI	GCWGC	4 cut(s)	26, 44, 128, 473
Tsp45I	GTSAC	2 cut(s)	171, 463
TspDTI	ATGAA	4 cut(s)	17, 32, 204, 300
TspGWI	ACGGA	1 cut(s)	397
VpaK11BI	GGWCC	1 cut(s)	197
ZraI	GACGTC	1 cut(s)	70
Zsp2I	ATGCAT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.