Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002558

Physical Location & Seq

Genomic Coordinates Reverse (-)

6857859 .. 6859983

Gene Structure 2125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G007550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGCCTGTAATGGAGCCTCTTCTTCCTCTGGTTCTCTCACCCCTTCATGCAGACATGATGTGTTTTTGAGTTTTAGAGGTACAGATACGCGCTCCGGTTTTACATATAATCTGTACAAGGCTTTAGATAGAGCGAAAATCAAGACTTTCTTTGATGATCGTACGCTCAAGAGAGGAGAGAACATATCAGCAGCACTTCTTCACGCAATTGAAGTTTCAAGGATTTCTGTGGTGATATGCTCTGAAAACTACGCTTCGTCAAGTTGGTGCTTGGATGAACTCGTCAAGATCCTTGAATGTCAAAAATCAAAGCAGCAGATTGTTATTCCAGTATTCTACAAAGTGGATCCAGCACATGTCCGACATCAAATTGGTAGTTTTGGTCAGGCCCTTACCGTCTTGAAATACAACGAGGACAAGGTCCCCGGATGGAGGATAGCTCTTACACAAGTAGCAAATTTGTCTGGATGGACTTATGTGGACGGGTATGAATCTGATTTTATTGAGAAAATTGTTAAAGAGATATTAGATGTGGTTGGCCTCGACAACTATAAGAAGAAAGAAGATGTGGCCAGCCTCAACCACCAAAACAAAAAAACAGATTTAACAGGTCTCAATGACCAAACGAAGAACAACAATTGGGCCAACGTTTACAATCAGTCTTTGCTTAAGCTCCAGAAGAATATAGATGGGGCAGACGTCTACAACAAGACCTTCCTTCGACTCCAGGAGAATGTAGTTGAGGATGATGTCTACAACAAGTCCTTCCTTCGACTCCAAAAGGAATCAGAGGAGGCGGATGTCTACAACAAGACCTTCCTTCGGCTCCAGAAGGAATCAGAGGAGGCGGACGTCTACAACAAGACATTACTTCGGCTCCAGAAGGAATCAGAGGATGCGGACGTCTACAACAAGACATTACTTCGGCTCCAGAAGGAATCAGAGGAGGCGGACGTCTACAACAAGACATTACTTCGGCTCCAGAAGGAATCAGAGGAGGCGGACGTCTACAACAAGACATTACTTCGGCTCCAGAAGGAATCGGAGGAGGCGGACATCTACAATAAGACATTGTTTCGACTCCAAAACAAGGGCGGATCCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

368

Amino Acids

42.23

Weight (kDa)

6.08

Isoelectric Point (pI)

54.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	19 - 200	1.3e-55	TIR domain
TIR_2	PF13676	21 - 117	9.3e-16	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20142
fragaria_vesca	FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730 FvH4_5g10730
malus_domestica	MD05G1140000.v1.1
prunus_persica	Prupe.1G120200_v2.0.a1
pyrus_communis	pycom03g08420 pycom04g02910 pycom10g12010 pycom10g12080 pycom10g12100
rosa_chinensis	RchiOBHm_Chr3g0451631 RchiOBHm_Chr5g0026391 RchiOBHm_Chr7g0241711
rosa_laevigata	RLG00000004786 RLG00000004787 RLG00000029480
rosa_multiflora	Rmu_co8097864.1_g000001 Rmu_sc0001689.1_g000015 Rmu_sc0002354.1_g000038 Rmu_sc0003469.1_g000013 Rmu_sc0006326.1_g000044 Rmu_sc0038436.1_g000001 Rmu_sc0043107.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053220 Rroxscaffold_3G00218740 Rroxscaffold_3G00267480 Rroxscaffold_4G00317010 Rroxscaffold_6G00397670 Rroxscaffold_6G00397680
rosa_rugosa	Rorug01G0112600 Rorug05G0000700 Rorug06G0259600 Rorug07G0346700
rosa_samantha	Rh7AG085700
rosa_wichuraiana	Rw1G011340 Rw7G007550 Rw7G042350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	5 cut(s)	702, 855, 906, 957, 1008
AccI	GTMKAC	7 cut(s)	702, 753, 804, 855, 906, 957, 1008
AccII	CGCG	1 cut(s)	91
AciI	CCGC	7 cut(s)	797, 848, 899, 950, 1001, 1052, 1095
AclI	AACGTT	1 cut(s)	648
AclWI	GGATC	5 cut(s)	283, 341, 354, 1092, 1105
AcoI	YGGCCR	1 cut(s)	570
AcsI	RAATTY	1 cut(s)	457
AcyI	GRCGYC	5 cut(s)	699, 852, 903, 954, 1005
AfaI	GTAC	3 cut(s)	82, 116, 163
AfiI	CCNNNNNNNGG	3 cut(s)	432, 822, 1090
AflII	CTTAAG	1 cut(s)	668
AflIII	ACRYGT	1 cut(s)	355
AgsI	TTSAA	4 cut(s)	212, 219, 296, 403
AjnI	CCWGG	1 cut(s)	726
AluBI	AGCT	2 cut(s)	440, 673
AluI	AGCT	2 cut(s)	440, 673
Alw26I	GTCTC	1 cut(s)	617
AlwI	GGATC	5 cut(s)	283, 341, 354, 1092, 1105
AoxI	GGCC	5 cut(s)	3, 387, 538, 570, 642
ApeKI	GCWGC	2 cut(s)	191, 313
ApoI	RAATTY	1 cut(s)	457
AspLEI	GCGC	1 cut(s)	93
AspS9I	GGNCC	3 cut(s)	388, 421, 642
AsuC2I	CCSGG	1 cut(s)	426
AsuHPI	GGTGA	2 cut(s)	31, 244
AvaII	GGWCC	1 cut(s)	421
BalI	TGGCCA	1 cut(s)	572
BamHI	GGATCC	2 cut(s)	346, 1097
BbvI	GCAGC	2 cut(s)	203, 325
BccI	CCATC	3 cut(s)	423, 462, 683
BciT130I	CCWGG	1 cut(s)	728
BcnI	CCSGG	1 cut(s)	426
BcoDI	GTCTC	1 cut(s)	617
BfrI	CTTAAG	1 cut(s)	668
BisI	GCNGC	2 cut(s)	192, 314
BlsI	GCNGC	2 cut(s)	193, 315
Bme1390I	CCNGG	2 cut(s)	426, 728
Bme18I	GGWCC	1 cut(s)	421
BmgT120I	GGNCC	3 cut(s)	388, 421, 642
BmiI	GGNNCC	9 cut(s)	16, 348, 423, 827, 878, 929, 980, 1031, 1099
BmrFI	CCNGG	2 cut(s)	426, 728
BmsI	GCATC	1 cut(s)	886
BplI	GAGNNNNNCTC	2 cut(s)	424, 456
BpmI	CTGGAG	7 cut(s)	659, 710, 812, 863, 914, 965, 1016
BpuEI	CTTGAG	1 cut(s)	152
BpuMI	CCSGG	1 cut(s)	426
BsaHI	GRCGYC	5 cut(s)	699, 852, 903, 954, 1005
BsaI	GGTCTC	1 cut(s)	617
BsaJI	CCNNGG	1 cut(s)	424
BsaWI	WCCGGW	1 cut(s)	95
BsaXI	ACNNNNNCTCC	8 cut(s)	861, 891, 912, 942, 963, 993, 1014, 1044
Bsc4I	CCNNNNNNNGG	3 cut(s)	432, 822, 1090
Bse1I	ACTGG	1 cut(s)	329
BseBI	CCWGG	1 cut(s)	728
BseDI	CCNNGG	1 cut(s)	424
BseGI	GGATG	6 cut(s)	280, 434, 473, 751, 805, 901
BseLI	CCNNNNNNNGG	3 cut(s)	432, 822, 1090
BseNI	ACTGG	1 cut(s)	329
BseRI	GAGGAG	6 cut(s)	189, 806, 857, 959, 1010, 1061
BseXI	GCAGC	2 cut(s)	203, 325
Bsh1236I	CGCG	1 cut(s)	91
BshFI	GGCC	5 cut(s)	5, 389, 540, 572, 644
BsiSI	CCGG	2 cut(s)	96, 426
BsiWI	CGTACG	1 cut(s)	161
BslFI	GGGAC	1 cut(s)	407
BslI	CCNNNNNNNGG	3 cut(s)	432, 822, 1090
BsmAI	GTCTC	1 cut(s)	617
BsmFI	GGGAC	1 cut(s)	407
BsnI	GGCC	5 cut(s)	5, 389, 540, 572, 644
Bso31I	GGTCTC	1 cut(s)	617
Bsp1407I	TGTACA	1 cut(s)	114
Bsp143I	GATC	4 cut(s)	157, 288, 346, 1097
BspACI	CCGC	7 cut(s)	797, 848, 899, 950, 1001, 1052, 1095
BspANI	GGCC	5 cut(s)	5, 389, 540, 572, 644
BspFNI	CGCG	1 cut(s)	91
BspLI	GGNNCC	9 cut(s)	16, 348, 423, 827, 878, 929, 980, 1031, 1099
BspPI	GGATC	5 cut(s)	283, 341, 354, 1092, 1105
BspTI	CTTAAG	1 cut(s)	668
BspTNI	GGTCTC	1 cut(s)	617
BsrGI	TGTACA	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	329
BssECI	CCNNGG	1 cut(s)	424
BssMI	GATC	4 cut(s)	157, 288, 346, 1097
BssNI	GRCGYC	5 cut(s)	699, 852, 903, 954, 1005
Bst2UI	CCWGG	1 cut(s)	728
Bst4CI	ACNGT	1 cut(s)	397
Bst6I	CTCTTC	1 cut(s)	25
BstACI	GRCGYC	5 cut(s)	699, 852, 903, 954, 1005
BstAFI	CTTAAG	1 cut(s)	668
BstAUI	TGTACA	1 cut(s)	114
BstC8I	GCNNGC	1 cut(s)	574
BstF5I	GGATG	6 cut(s)	280, 434, 473, 751, 805, 901
BstFNI	CGCG	1 cut(s)	91
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	4 cut(s)	160, 291, 349, 1100
BstMAI	GTCTC	1 cut(s)	617
BstMBI	GATC	4 cut(s)	157, 288, 346, 1097
BstNI	CCWGG	1 cut(s)	728
BstNSI	RCATGY	1 cut(s)	359
BstSCI	CCNGG	2 cut(s)	424, 726
BstUI	CGCG	1 cut(s)	91
BstV1I	GCAGC	2 cut(s)	203, 325
BstX2I	RGATCY	3 cut(s)	288, 346, 1097
BstYI	RGATCY	3 cut(s)	288, 346, 1097
BsuRI	GGCC	5 cut(s)	5, 389, 540, 572, 644
BtsCI	GGATG	6 cut(s)	280, 434, 473, 751, 805, 901
Cac8I	GCNNGC	1 cut(s)	574
CfoI	GCGC	1 cut(s)	93
Cfr13I	GGNCC	3 cut(s)	388, 421, 642
Csp6I	GTAC	3 cut(s)	81, 115, 162
CviAII	CATG	4 cut(s)	48, 56, 356, 1102
CviQI	GTAC	3 cut(s)	81, 115, 162
DpnI	GATC	4 cut(s)	159, 290, 348, 1099
DpnII	GATC	4 cut(s)	157, 288, 346, 1097
EaeI	YGGCCR	1 cut(s)	570
Eam1104I	CTCTTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	25
EciI	GGCGGA	5 cut(s)	812, 863, 965, 1016, 1067
Eco31I	GGTCTC	1 cut(s)	617
Eco47I	GGWCC	1 cut(s)	421
EcoO109I	RGGNCCY	2 cut(s)	388, 421
EcoRII	CCWGG	1 cut(s)	726
FaeI	CATG	4 cut(s)	51, 59, 359, 1105
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FaqI	GGGAC	1 cut(s)	407
FatI	CATG	4 cut(s)	47, 55, 355, 1101
FblI	GTMKAC	7 cut(s)	702, 753, 804, 855, 906, 957, 1008
Fnu4HI	GCNGC	2 cut(s)	192, 314
FokI	GGATG	6 cut(s)	287, 441, 480, 758, 812, 908
Fsp4HI	GCNGC	2 cut(s)	192, 314
GlaI	GCGC	1 cut(s)	92
GluI	GCNGC	2 cut(s)	192, 314
GsuI	CTGGAG	7 cut(s)	659, 710, 812, 863, 914, 965, 1016
HaeIII	GGCC	5 cut(s)	5, 389, 540, 572, 644
HapII	CCGG	2 cut(s)	96, 426
HhaI	GCGC	1 cut(s)	93
Hin1I	GRCGYC	5 cut(s)	699, 852, 903, 954, 1005
Hin1II	CATG	4 cut(s)	51, 59, 359, 1105
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HpaII	CCGG	2 cut(s)	96, 426
HphI	GGTGA	2 cut(s)	31, 244
Hpy166II	GTNNAC	9 cut(s)	481, 652, 703, 754, 805, 856, 907, 958, 1009
Hpy188I	TCNGA	9 cut(s)	244, 362, 496, 790, 841, 892, 943, 994, 1045
Hpy8I	GTNNAC	9 cut(s)	481, 652, 703, 754, 805, 856, 907, 958, 1009
HpyCH4III	ACNGT	1 cut(s)	397
HpyCH4IV	ACGT	6 cut(s)	648, 699, 852, 903, 954, 1005
HpyCH4V	TGCA	1 cut(s)	51
HpySE526I	ACGT	6 cut(s)	648, 699, 852, 903, 954, 1005
Hsp92I	GRCGYC	5 cut(s)	699, 852, 903, 954, 1005
Hsp92II	CATG	4 cut(s)	51, 59, 359, 1105
HspAI	GCGC	1 cut(s)	91
Kzo9I	GATC	4 cut(s)	157, 288, 346, 1097
LmnI	GCTCC	8 cut(s)	14, 98, 678, 831, 882, 933, 984, 1035
Lsp1109I	GCAGC	2 cut(s)	203, 325
LweI	GCATC	1 cut(s)	886
MaeII	ACGT	6 cut(s)	648, 699, 852, 903, 954, 1005
MalI	GATC	4 cut(s)	159, 290, 348, 1099
MboI	GATC	4 cut(s)	157, 288, 346, 1097
MboII	GAAGA	7 cut(s)	12, 15, 191, 568, 575, 640, 691
MfeI	CAATTG	2 cut(s)	207, 637
MflI	RGATCY	3 cut(s)	288, 346, 1097
MlsI	TGGCCA	1 cut(s)	572
MluCI	AATT	5 cut(s)	207, 369, 457, 510, 637
MluNI	TGGCCA	1 cut(s)	572
MlyI	GAGTC	3 cut(s)	717, 768, 1074
MmeI	TCCRAC	1 cut(s)	385
Mox20I	TGGCCA	1 cut(s)	572
MscI	TGGCCA	1 cut(s)	572
MseI	TTAA	3 cut(s)	516, 605, 669
Msp20I	TGGCCA	1 cut(s)	572
MspCI	CTTAAG	1 cut(s)	668
MspI	CCGG	2 cut(s)	96, 426
MspR9I	CCNGG	2 cut(s)	426, 728
MunI	CAATTG	2 cut(s)	207, 637
MvaI	CCWGG	1 cut(s)	728
MvnI	CGCG	1 cut(s)	91
NciI	CCSGG	1 cut(s)	426
NdeII	GATC	4 cut(s)	157, 288, 346, 1097
NlaIII	CATG	4 cut(s)	51, 59, 359, 1105
NlaIV	GGNNCC	9 cut(s)	16, 348, 423, 827, 878, 929, 980, 1031, 1099
NspI	RCATGY	1 cut(s)	359
PciI	ACATGT	1 cut(s)	355
PfeI	GAWTC	7 cut(s)	491, 785, 836, 887, 938, 989, 1040
Pfl23II	CGTACG	1 cut(s)	161
PflFI	GACNNNGTC	1 cut(s)	419
PfoI	TCCNGGA	1 cut(s)	726
PkrI	GCNGC	2 cut(s)	193, 315
PleI	GAGTC	3 cut(s)	717, 768, 1074
PpsI	GAGTC	3 cut(s)	717, 768, 1074
PpuMI	RGGWCCY	1 cut(s)	421
PscI	ACATGT	1 cut(s)	355
Psp1406I	AACGTT	1 cut(s)	648
Psp5II	RGGWCCY	1 cut(s)	421
Psp6I	CCWGG	1 cut(s)	726
PspGI	CCWGG	1 cut(s)	726
PspLI	CGTACG	1 cut(s)	161
PspN4I	GGNNCC	9 cut(s)	16, 348, 423, 827, 878, 929, 980, 1031, 1099
PspPI	GGNCC	3 cut(s)	388, 421, 642
PspPPI	RGGWCCY	1 cut(s)	421
PsuI	RGATCY	3 cut(s)	288, 346, 1097
PsyI	GACNNNGTC	1 cut(s)	419
RsaI	GTAC	3 cut(s)	82, 116, 163
RsaNI	GTAC	3 cut(s)	81, 115, 162
SaqAI	TTAA	3 cut(s)	516, 605, 669
SatI	GCNGC	2 cut(s)	192, 314
Sau3AI	GATC	4 cut(s)	157, 288, 346, 1097
Sau96I	GGNCC	3 cut(s)	388, 421, 642
SchI	GAGTC	3 cut(s)	717, 768, 1074
ScrFI	CCNGG	2 cut(s)	426, 728
SfaNI	GCATC	1 cut(s)	886
SinI	GGWCC	1 cut(s)	421
SmlI	CTYRAG	2 cut(s)	167, 668
SmoI	CTYRAG	2 cut(s)	167, 668
Sse9I	AATT	5 cut(s)	207, 369, 457, 510, 637
SsiI	CCGC	7 cut(s)	797, 848, 899, 950, 1001, 1052, 1095
StyD4I	CCNGG	2 cut(s)	424, 726
TaaI	ACNGT	1 cut(s)	397
TaiI	ACGT	6 cut(s)	651, 702, 855, 906, 957, 1008
TaqI	TCGA	4 cut(s)	543, 721, 772, 1078
TasI	AATT	5 cut(s)	207, 369, 457, 510, 637
TatI	WGTACW	1 cut(s)	114
TfiI	GAWTC	7 cut(s)	491, 785, 836, 887, 938, 989, 1040
Tru1I	TTAA	3 cut(s)	516, 605, 669
Tru9I	TTAA	3 cut(s)	516, 605, 669
TseI	GCWGC	2 cut(s)	191, 313
TspDTI	ATGAA	3 cut(s)	36, 291, 504
Tth111I	GACNNNGTC	1 cut(s)	419
Vha464I	CTTAAG	1 cut(s)	668
VpaK11BI	GGWCC	1 cut(s)	421
XapI	RAATTY	1 cut(s)	457
XceI	RCATGY	1 cut(s)	359
XmiI	GTMKAC	7 cut(s)	702, 753, 804, 855, 906, 957, 1008
ZraI	GACGTC	5 cut(s)	700, 853, 904, 955, 1006

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.