Rmu_sc0041594.1_g000001

divergent subfamily of APPLE domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0041594.1
OG0031606
Physical Location & Seq
Forward (+)
1 .. 359
359 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0041594.1_g000001.1.cds

Sequence Viewer

Length: 309 bp
gtatgggacctatggagagaacagtgtgtcctagacgttgtagatttcctactggagtcatataacattgatgaagtcctgagatgccttcaaattgggcttttatgcctgcaagaagatacaacagataggccaactatgtccgaagttgtcctaatgttgagtggtgaaagagctcttgcatcccctcaaagaccagcattcatcttcaaaaacacttgcaattgccacaatagttccggcttatcaataacaggaggatcttattctgctaatgatctgacagtcactaaagtcgtaggacgatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

102

Amino Acids

11.37

Weight (kDa)

4.61

Isoelectric Point (pI)

50.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031606)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0041594.1_g000001
rosa_samantha Rh5CG048400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 268
AgsI TTSAA 2 cut(s) 92, 211
AloI GAACNNNNNNTCC 2 cut(s) 12, 44
AluBI AGCT 1 cut(s) 176
AluI AGCT 1 cut(s) 176
Alw21I GWGCWC 1 cut(s) 178
AlwI GGATC 1 cut(s) 268
AoxI GGCC 1 cut(s) 131
AspS9I GGNCC 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 179
AvaII GGWCC 1 cut(s) 7
BanII GRGCYC 1 cut(s) 178
Bbv12I GWGCWC 1 cut(s) 178
BfaI CTAG 1 cut(s) 32
Bme18I GGWCC 1 cut(s) 7
BmgT120I GGNCC 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 8
BmsI GCATC 2 cut(s) 74, 191
BpmI CTGGAG 1 cut(s) 74
Bse1I ACTGG 1 cut(s) 57
BseGI GGATG 1 cut(s) 182
BseMII CTCAG 1 cut(s) 71
BseNI ACTGG 1 cut(s) 57
BshFI GGCC 1 cut(s) 133
BsiHKAI GWGCWC 1 cut(s) 178
BsiSI CCGG 1 cut(s) 240
BslFI GGGAC 1 cut(s) 20
BsmFI GGGAC 1 cut(s) 20
BsmI GAATGC 1 cut(s) 200
BsnI GGCC 1 cut(s) 133
Bsp1286I GDGCHC 1 cut(s) 178
Bsp143I GATC 2 cut(s) 260, 277
BspANI GGCC 1 cut(s) 133
BspCNI CTCAG 1 cut(s) 72
BspLI GGNNCC 1 cut(s) 8
BspPI GGATC 1 cut(s) 268
BsrI ACTGG 1 cut(s) 57
BssMI GATC 2 cut(s) 260, 277
Bst4CI ACNGT 2 cut(s) 24, 286
BstC8I GCNNGC 1 cut(s) 110
BstDEI CTNAG 1 cut(s) 80
BstF5I GGATG 1 cut(s) 182
BstKTI GATC 2 cut(s) 263, 280
BstMBI GATC 2 cut(s) 260, 277
BstX2I RGATCY 1 cut(s) 260
BstYI RGATCY 1 cut(s) 260
BsuRI GGCC 1 cut(s) 133
BtsCI GGATG 1 cut(s) 182
BtsIMutI CAGTG 1 cut(s) 29
Cac8I GCNNGC 1 cut(s) 110
Cfr13I GGNCC 1 cut(s) 7
CviJI RGCY 4 cut(s) 100, 133, 176, 243
CviKI_1 RGCY 4 cut(s) 100, 133, 176, 243
DdeI CTNAG 1 cut(s) 80
DpnI GATC 2 cut(s) 262, 279
DpnII GATC 2 cut(s) 260, 277
Ecl136II GAGCTC 1 cut(s) 176
Eco24I GRGCYC 1 cut(s) 178
Eco47I GGWCC 1 cut(s) 7
Eco53kI GAGCTC 1 cut(s) 176
EcoICRI GAGCTC 1 cut(s) 176
EcoO109I RGGNCCY 1 cut(s) 7
EcoT38I GRGCYC 1 cut(s) 178
FaiI YATR 6 cut(s) 4, 13, 61, 63, 106, 140
FaqI GGGAC 1 cut(s) 20
FokI GGATG 1 cut(s) 169
FriOI GRGCYC 1 cut(s) 178
FspBI CTAG 1 cut(s) 32
GsuI CTGGAG 1 cut(s) 74
HaeIII GGCC 1 cut(s) 133
HapII CCGG 1 cut(s) 240
HinfI GANTC 1 cut(s) 56
HpaII CCGG 1 cut(s) 240
HphI GGTGA 1 cut(s) 179
Hpy188I TCNGA 2 cut(s) 145, 282
Hpy188III TCNNGA 1 cut(s) 79
HpyAV CCTTC 1 cut(s) 98
HpyCH4III ACNGT 2 cut(s) 24, 286
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 3 cut(s) 112, 182, 222
HpyF3I CTNAG 1 cut(s) 80
HpySE526I ACGT 1 cut(s) 36
Kzo9I GATC 2 cut(s) 260, 277
LpnPI CCDG 6 cut(s) 38, 92, 122, 210, 240, 253
LweI GCATC 2 cut(s) 74, 191
MaeI CTAG 1 cut(s) 32
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 1 cut(s) 286
MalI GATC 2 cut(s) 262, 279
MboI GATC 2 cut(s) 260, 277
MboII GAAGA 2 cut(s) 128, 199
MfeI CAATTG 1 cut(s) 223
MflI RGATCY 1 cut(s) 260
MhlI GDGCHC 1 cut(s) 178
MluCI AATT 2 cut(s) 93, 223
MlyI GAGTC 1 cut(s) 65
MnlI CCTC 2 cut(s) 198, 251
MspI CCGG 1 cut(s) 240
MunI CAATTG 1 cut(s) 223
Mva1269I GAATGC 1 cut(s) 200
NdeII GATC 2 cut(s) 260, 277
NlaIV GGNNCC 1 cut(s) 8
NmuCI GTSAC 1 cut(s) 286
PctI GAATGC 1 cut(s) 200
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
PpuMI RGGWCCY 1 cut(s) 7
Psp124BI GAGCTC 1 cut(s) 178
Psp5II RGGWCCY 1 cut(s) 7
PspN4I GGNNCC 1 cut(s) 8
PspPI GGNCC 1 cut(s) 7
PspPPI RGGWCCY 1 cut(s) 7
PsuI RGATCY 1 cut(s) 260
SacI GAGCTC 1 cut(s) 178
Sau3AI GATC 2 cut(s) 260, 277
Sau96I GGNCC 1 cut(s) 7
SchI GAGTC 1 cut(s) 65
SduI GDGCHC 1 cut(s) 178
SetI ASST 3 cut(s) 12, 39, 178
SfaNI GCATC 2 cut(s) 74, 191
SinI GGWCC 1 cut(s) 7
Sse9I AATT 2 cut(s) 93, 223
SspMI CTAG 1 cut(s) 32
SstI GAGCTC 1 cut(s) 178
TaaI ACNGT 2 cut(s) 24, 286
TaiI ACGT 1 cut(s) 39
TasI AATT 2 cut(s) 93, 223
TscAI CASTG 1 cut(s) 29
TseFI GTSAC 1 cut(s) 286
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 2 cut(s) 87, 193
TspRI CASTG 1 cut(s) 29
VpaK11BI GGWCC 1 cut(s) 7
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.