divergent subfamily of APPLE domains
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_multiflora | Rmu_sc0041594.1_g000001 |
| rosa_samantha | Rh5CG048400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 274 |
| AgsI | TTSAA | 2 cut(s) | 98, 217 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 18, 50 |
| AluBI | AGCT | 1 cut(s) | 182 |
| AluI | AGCT | 1 cut(s) | 182 |
| Alw21I | GWGCWC | 1 cut(s) | 184 |
| AlwI | GGATC | 1 cut(s) | 274 |
| AoxI | GGCC | 1 cut(s) | 137 |
| AspS9I | GGNCC | 1 cut(s) | 13 |
| AsuHPI | GGTGA | 1 cut(s) | 185 |
| AvaII | GGWCC | 1 cut(s) | 13 |
| BanII | GRGCYC | 1 cut(s) | 184 |
| Bbv12I | GWGCWC | 1 cut(s) | 184 |
| BfaI | CTAG | 1 cut(s) | 38 |
| Bme18I | GGWCC | 1 cut(s) | 13 |
| BmgT120I | GGNCC | 1 cut(s) | 13 |
| BmiI | GGNNCC | 1 cut(s) | 14 |
| BmsI | GCATC | 2 cut(s) | 80, 197 |
| BpmI | CTGGAG | 1 cut(s) | 80 |
| Bse1I | ACTGG | 1 cut(s) | 63 |
| BseGI | GGATG | 1 cut(s) | 188 |
| BseMII | CTCAG | 1 cut(s) | 77 |
| BseNI | ACTGG | 1 cut(s) | 63 |
| BshFI | GGCC | 1 cut(s) | 139 |
| BsiHKAI | GWGCWC | 1 cut(s) | 184 |
| BsiSI | CCGG | 1 cut(s) | 246 |
| BslFI | GGGAC | 1 cut(s) | 26 |
| BsmFI | GGGAC | 1 cut(s) | 26 |
| BsmI | GAATGC | 1 cut(s) | 206 |
| BsnI | GGCC | 1 cut(s) | 139 |
| Bsp1286I | GDGCHC | 1 cut(s) | 184 |
| Bsp143I | GATC | 2 cut(s) | 266, 283 |
| BspANI | GGCC | 1 cut(s) | 139 |
| BspCNI | CTCAG | 1 cut(s) | 78 |
| BspLI | GGNNCC | 1 cut(s) | 14 |
| BspPI | GGATC | 1 cut(s) | 274 |
| BsrI | ACTGG | 1 cut(s) | 63 |
| BssMI | GATC | 2 cut(s) | 266, 283 |
| Bst4CI | ACNGT | 2 cut(s) | 30, 292 |
| BstC8I | GCNNGC | 1 cut(s) | 116 |
| BstDEI | CTNAG | 1 cut(s) | 86 |
| BstF5I | GGATG | 1 cut(s) | 188 |
| BstKTI | GATC | 2 cut(s) | 269, 286 |
| BstMBI | GATC | 2 cut(s) | 266, 283 |
| BstX2I | RGATCY | 1 cut(s) | 266 |
| BstYI | RGATCY | 1 cut(s) | 266 |
| BsuRI | GGCC | 1 cut(s) | 139 |
| BtsCI | GGATG | 1 cut(s) | 188 |
| BtsIMutI | CAGTG | 1 cut(s) | 35 |
| Cac8I | GCNNGC | 1 cut(s) | 116 |
| Cfr13I | GGNCC | 1 cut(s) | 13 |
| CviJI | RGCY | 4 cut(s) | 106, 139, 182, 249 |
| CviKI_1 | RGCY | 4 cut(s) | 106, 139, 182, 249 |
| DdeI | CTNAG | 1 cut(s) | 86 |
| DpnI | GATC | 2 cut(s) | 268, 285 |
| DpnII | GATC | 2 cut(s) | 266, 283 |
| Ecl136II | GAGCTC | 1 cut(s) | 182 |
| Eco24I | GRGCYC | 1 cut(s) | 184 |
| Eco47I | GGWCC | 1 cut(s) | 13 |
| Eco53kI | GAGCTC | 1 cut(s) | 182 |
| EcoICRI | GAGCTC | 1 cut(s) | 182 |
| EcoO109I | RGGNCCY | 1 cut(s) | 13 |
| EcoT38I | GRGCYC | 1 cut(s) | 184 |
| FaiI | YATR | 6 cut(s) | 10, 19, 67, 69, 112, 146 |
| FaqI | GGGAC | 1 cut(s) | 26 |
| FokI | GGATG | 1 cut(s) | 175 |
| FriOI | GRGCYC | 1 cut(s) | 184 |
| FspBI | CTAG | 1 cut(s) | 38 |
| GsuI | CTGGAG | 1 cut(s) | 80 |
| HaeIII | GGCC | 1 cut(s) | 139 |
| HapII | CCGG | 1 cut(s) | 246 |
| HinfI | GANTC | 1 cut(s) | 62 |
| HpaII | CCGG | 1 cut(s) | 246 |
| HphI | GGTGA | 1 cut(s) | 185 |
| Hpy188I | TCNGA | 2 cut(s) | 151, 288 |
| Hpy188III | TCNNGA | 1 cut(s) | 85 |
| HpyAV | CCTTC | 1 cut(s) | 104 |
| HpyCH4III | ACNGT | 2 cut(s) | 30, 292 |
| HpyCH4IV | ACGT | 1 cut(s) | 42 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 118, 188, 228 |
| HpyF3I | CTNAG | 1 cut(s) | 86 |
| HpySE526I | ACGT | 1 cut(s) | 42 |
| Kzo9I | GATC | 2 cut(s) | 266, 283 |
| LpnPI | CCDG | 6 cut(s) | 44, 98, 128, 216, 246, 259 |
| LweI | GCATC | 2 cut(s) | 80, 197 |
| MaeI | CTAG | 1 cut(s) | 38 |
| MaeII | ACGT | 1 cut(s) | 42 |
| MaeIII | GTNAC | 1 cut(s) | 292 |
| MalI | GATC | 2 cut(s) | 268, 285 |
| MboI | GATC | 2 cut(s) | 266, 283 |
| MboII | GAAGA | 2 cut(s) | 134, 205 |
| MfeI | CAATTG | 1 cut(s) | 229 |
| MflI | RGATCY | 1 cut(s) | 266 |
| MhlI | GDGCHC | 1 cut(s) | 184 |
| MluCI | AATT | 2 cut(s) | 99, 229 |
| MlyI | GAGTC | 1 cut(s) | 71 |
| MnlI | CCTC | 2 cut(s) | 204, 257 |
| MspI | CCGG | 1 cut(s) | 246 |
| MunI | CAATTG | 1 cut(s) | 229 |
| Mva1269I | GAATGC | 1 cut(s) | 206 |
| NdeII | GATC | 2 cut(s) | 266, 283 |
| NlaIV | GGNNCC | 1 cut(s) | 14 |
| NmuCI | GTSAC | 1 cut(s) | 292 |
| PctI | GAATGC | 1 cut(s) | 206 |
| PleI | GAGTC | 1 cut(s) | 70 |
| PpsI | GAGTC | 1 cut(s) | 70 |
| PpuMI | RGGWCCY | 1 cut(s) | 13 |
| Psp124BI | GAGCTC | 1 cut(s) | 184 |
| Psp5II | RGGWCCY | 1 cut(s) | 13 |
| PspN4I | GGNNCC | 1 cut(s) | 14 |
| PspPI | GGNCC | 1 cut(s) | 13 |
| PspPPI | RGGWCCY | 1 cut(s) | 13 |
| PsuI | RGATCY | 1 cut(s) | 266 |
| SacI | GAGCTC | 1 cut(s) | 184 |
| Sau3AI | GATC | 2 cut(s) | 266, 283 |
| Sau96I | GGNCC | 1 cut(s) | 13 |
| SchI | GAGTC | 1 cut(s) | 71 |
| SduI | GDGCHC | 1 cut(s) | 184 |
| SetI | ASST | 4 cut(s) | 9, 18, 45, 184 |
| SfaNI | GCATC | 2 cut(s) | 80, 197 |
| SinI | GGWCC | 1 cut(s) | 13 |
| Sse9I | AATT | 2 cut(s) | 99, 229 |
| SspMI | CTAG | 1 cut(s) | 38 |
| SstI | GAGCTC | 1 cut(s) | 184 |
| TaaI | ACNGT | 2 cut(s) | 30, 292 |
| TaiI | ACGT | 1 cut(s) | 45 |
| TasI | AATT | 2 cut(s) | 99, 229 |
| TscAI | CASTG | 1 cut(s) | 35 |
| TseFI | GTSAC | 1 cut(s) | 292 |
| Tsp45I | GTSAC | 1 cut(s) | 292 |
| TspDTI | ATGAA | 2 cut(s) | 93, 199 |
| TspRI | CASTG | 1 cut(s) | 35 |
| VpaK11BI | GGWCC | 1 cut(s) | 13 |
| XspI | CTAG | 1 cut(s) | 38 |