Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000019.1

Orthogroup ID

OG0030998

Physical Location & Seq

Genomic Coordinates Forward (+)

84605 .. 87785

Gene Structure 3181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000019.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ctgtccaactcaacccgacaatatttttcgattccggagttctccggcggcaccaccagcacagacaacttcgcctcttcctcaccgtcatacctacggtgttggttttcccctattcaggccgtacacggtagatcgagggccgacaatttggccgtgctggccccggtcctagctctctcctcctgccacgacggagctcaaaacaagttggattttgtaggcctttctcttttgatctatactagtattgaggatcgccttaaccccaggtatgaaagttgcttctctcacctagagattcattttgaacagttagatcaacctagttttgaggttgatacggcggagaatggggctcacgcacagccacttgtgacagcgcgtctggccatggctggagctgtttcttgctccattatcatctacttgtcttttgatatatgggttgttgcatttgggttcggtttgcttgttcctcagttgaaggcactgtctgcactagagggcattgtagctattggtgcgatttcttcagatttcaaagcgagaaaagaagcagactcatcacaaatggcaggaagactgagcagcgcggcgtccaaaatcatgggcggaaacggcgtcgtccaccgttccgtcgcctcctctctccgcctccgcgccggcatgggcctcccggtcggcaaacacatcgtccccgacagacccctccccgtcaacgacgagctcgtctgggacaacggcacgccgttccccgaaccctgtatcgatcgcatcgccgacaccgtgggaaagtacgaagctttggcttggctgaccggaggtctgagctgcttcgttgggctgggcttgttggccgtgtggaacgacaaggcgtccaagattccgtttgcgccgaaagtgtacccatacgacaatctacgagtggagctcggcggagaaccgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

316

Amino Acids

33.97

Weight (kDa)

5.65

Isoelectric Point (pI)

38.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030998)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0011151.1_g000002 Rmu_ssc0000019.1_g000017

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	731
AccB1I	GGYRCC	1 cut(s)	50
AccII	CGCG	3 cut(s)	385, 596, 663
AccIII	TCCGGA	1 cut(s)	34
AciI	CCGC	7 cut(s)	48, 347, 596, 615, 655, 661, 939
AclWI	GGATC	1 cut(s)	264
AcoI	YGGCCR	3 cut(s)	153, 390, 858
AcuI	CTGAAG	1 cut(s)	519
AcyI	GRCGYC	3 cut(s)	599, 624, 878
AfaI	GTAC	3 cut(s)	126, 800, 908
AfiI	CCNNNNNNNGG	1 cut(s)	118
AgsI	TTSAA	3 cut(s)	311, 487, 544
AhdI	GACNNNNNGTC	3 cut(s)	384, 825, 877
AhlI	ACTAGT	1 cut(s)	245
AjnI	CCWGG	1 cut(s)	269
AluBI	AGCT	8 cut(s)	176, 200, 404, 518, 730, 806, 834, 934
AluI	AGCT	8 cut(s)	176, 200, 404, 518, 730, 806, 834, 934
Alw21I	GWGCWC	3 cut(s)	202, 732, 936
AlwI	GGATC	1 cut(s)	264
Aor13HI	TCCGGA	1 cut(s)	34
AoxI	GGCC	8 cut(s)	120, 141, 153, 162, 223, 390, 673, 858
ApeKI	GCWGC	2 cut(s)	591, 834
ArsI	GACNNNNNNTTYG	2 cut(s)	681, 713
AspLEI	GCGC	4 cut(s)	385, 596, 665, 898
AspS9I	GGNCC	4 cut(s)	141, 163, 169, 673
AsuC2I	CCSGG	2 cut(s)	167, 680
AsuHPI	GGTGA	2 cut(s)	75, 284
AvaII	GGWCC	1 cut(s)	169
BalI	TGGCCA	1 cut(s)	392
BanI	GGYRCC	1 cut(s)	50
BanII	GRGCYC	4 cut(s)	202, 361, 732, 936
BbsI	GAAGAC	1 cut(s)	589
Bbv12I	GWGCWC	3 cut(s)	202, 732, 936
BbvI	GCAGC	2 cut(s)	603, 821
BceAI	ACGGC	7 cut(s)	107, 140, 360, 637, 736, 760, 845
BcgI	CGANNNNNNTGC	2 cut(s)	676, 710
BciT130I	CCWGG	1 cut(s)	271
BcnI	CCSGG	2 cut(s)	167, 680
BcuI	ACTAGT	1 cut(s)	245
BfaI	CTAG	5 cut(s)	173, 246, 296, 327, 503
BglI	GCCNNNNNGGC	1 cut(s)	161
BisI	GCNGC	4 cut(s)	49, 592, 597, 835
BlsI	GCNGC	4 cut(s)	50, 593, 598, 836
Bme1390I	CCNGG	3 cut(s)	167, 271, 680
Bme18I	GGWCC	1 cut(s)	169
BmeRI	GACNNNNNGTC	3 cut(s)	384, 825, 877
BmgT120I	GGNCC	4 cut(s)	141, 163, 169, 673
BmiI	GGNNCC	2 cut(s)	52, 165
BmrFI	CCNGG	3 cut(s)	167, 271, 680
BmsI	GCATC	1 cut(s)	786
BpiI	GAAGAC	1 cut(s)	589
BplI	GAGNNNNNCTC	2 cut(s)	918, 950
BpmI	CTGGAG	1 cut(s)	420
BpuMI	CCSGG	2 cut(s)	167, 680
Bsa29I	ATCGAT	1 cut(s)	771
BsaHI	GRCGYC	3 cut(s)	599, 624, 878
BsaJI	CCNNGG	4 cut(s)	165, 269, 393, 789
BsaWI	WCCGGW	2 cut(s)	34, 821
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
Bse118I	RCCGGY	1 cut(s)	665
BseAI	TCCGGA	1 cut(s)	34
BseBI	CCWGG	1 cut(s)	271
BseCI	ATCGAT	1 cut(s)	771
BseDI	CCNNGG	4 cut(s)	165, 269, 393, 789
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseMII	CTCAG	3 cut(s)	494, 578, 821
BseRI	GAGGAG	2 cut(s)	172, 637
BseXI	GCAGC	2 cut(s)	603, 821
BseYI	CCCAGC	1 cut(s)	847
BsgI	GTGCAG	1 cut(s)	483
Bsh1236I	CGCG	3 cut(s)	385, 596, 663
Bsh1285I	CGRYCG	2 cut(s)	684, 775
BshFI	GGCC	8 cut(s)	122, 143, 155, 164, 225, 392, 675, 860
BshNI	GGYRCC	1 cut(s)	50
BshVI	ATCGAT	1 cut(s)	771
BsiEI	CGRYCG	2 cut(s)	684, 775
BsiHKAI	GWGCWC	3 cut(s)	202, 732, 936
BsiSI	CCGG	6 cut(s)	35, 45, 167, 666, 680, 822
BslFI	GGGAC	2 cut(s)	683, 752
BslI	CCNNNNNNNGG	1 cut(s)	118
BsmFI	GGGAC	2 cut(s)	683, 752
BsnI	GGCC	8 cut(s)	122, 143, 155, 164, 225, 392, 675, 860
Bsp1286I	GDGCHC	4 cut(s)	202, 361, 732, 936
Bsp13I	TCCGGA	1 cut(s)	34
Bsp143I	GATC	5 cut(s)	134, 237, 256, 319, 772
Bsp19I	CCATGG	1 cut(s)	393
BspACI	CCGC	7 cut(s)	48, 347, 596, 615, 655, 661, 939
BspANI	GGCC	8 cut(s)	122, 143, 155, 164, 225, 392, 675, 860
BspCNI	CTCAG	3 cut(s)	493, 579, 822
BspDI	ATCGAT	1 cut(s)	771
BspEI	TCCGGA	1 cut(s)	34
BspFNI	CGCG	3 cut(s)	385, 596, 663
BspLI	GGNNCC	2 cut(s)	52, 165
BspPI	GGATC	1 cut(s)	264
BspT107I	GGYRCC	1 cut(s)	50
BsrFI	RCCGGY	1 cut(s)	665
BssAI	RCCGGY	1 cut(s)	665
BssECI	CCNNGG	4 cut(s)	165, 269, 393, 789
BssMI	GATC	5 cut(s)	134, 237, 256, 319, 772
BssNI	GRCGYC	3 cut(s)	599, 624, 878
BssT1I	CCWWGG	1 cut(s)	393
Bst2UI	CCWGG	1 cut(s)	271
Bst4CI	ACNGT	8 cut(s)	87, 99, 131, 315, 495, 635, 790, 948
Bst6I	CTCTTC	1 cut(s)	82
BstACI	GRCGYC	3 cut(s)	599, 624, 878
BstAPI	GCANNNNNTGC	1 cut(s)	497
BstC8I	GCNNGC	3 cut(s)	162, 667, 749
BstDEI	CTNAG	3 cut(s)	480, 587, 830
BstDSI	CCRYGG	2 cut(s)	393, 789
BstFNI	CGCG	3 cut(s)	385, 596, 663
BstHHI	GCGC	4 cut(s)	385, 596, 665, 898
BstKTI	GATC	5 cut(s)	137, 240, 259, 322, 775
BstMBI	GATC	5 cut(s)	134, 237, 256, 319, 772
BstMCI	CGRYCG	2 cut(s)	684, 775
BstMWI	GCNNNNNNNGC	6 cut(s)	57, 161, 389, 497, 524, 621
BstNI	CCWGG	1 cut(s)	271
BstSCI	CCNGG	3 cut(s)	165, 269, 678
BstUI	CGCG	3 cut(s)	385, 596, 663
BstV1I	GCAGC	2 cut(s)	603, 821
BstV2I	GAAGAC	1 cut(s)	589
BstXI	CCANNNNNNTGG	1 cut(s)	610
Bsu15I	ATCGAT	1 cut(s)	771
BsuRI	GGCC	8 cut(s)	122, 143, 155, 164, 225, 392, 675, 860
BsuTUI	ATCGAT	1 cut(s)	771
BtgI	CCRYGG	2 cut(s)	393, 789
BtgZI	GCGATG	1 cut(s)	763
BtsIMutI	CAGTG	1 cut(s)	491
Cac8I	GCNNGC	3 cut(s)	162, 667, 749
CfoI	GCGC	4 cut(s)	385, 596, 665, 898
Cfr10I	RCCGGY	1 cut(s)	665
Cfr13I	GGNCC	4 cut(s)	141, 163, 169, 673
ClaI	ATCGAT	1 cut(s)	771
CseI	GACGC	4 cut(s)	374, 588, 613, 867
Csp6I	GTAC	3 cut(s)	125, 799, 907
CviAII	CATG	3 cut(s)	394, 610, 670
CviQI	GTAC	3 cut(s)	125, 799, 907
DdeI	CTNAG	3 cut(s)	480, 587, 830
DpnI	GATC	5 cut(s)	136, 239, 258, 321, 774
DpnII	GATC	5 cut(s)	134, 237, 256, 319, 772
DrdI	GACNNNNNNGTC	1 cut(s)	731
DriI	GACNNNNNGTC	3 cut(s)	384, 825, 877
DseDI	GACNNNNNNGTC	1 cut(s)	731
EaeI	YGGCCR	3 cut(s)	153, 390, 858
Eam1104I	CTCTTC	1 cut(s)	82
Eam1105I	GACNNNNNGTC	3 cut(s)	384, 825, 877
EarI	CTCTTC	1 cut(s)	82
EciI	GGCGGA	3 cut(s)	362, 630, 644
Ecl136II	GAGCTC	3 cut(s)	200, 730, 934
Eco130I	CCWWGG	1 cut(s)	393
Eco147I	AGGCCT	1 cut(s)	225
Eco24I	GRGCYC	4 cut(s)	202, 361, 732, 936
Eco47I	GGWCC	1 cut(s)	169
Eco53kI	GAGCTC	3 cut(s)	200, 730, 934
Eco57I	CTGAAG	1 cut(s)	519
EcoICRI	GAGCTC	3 cut(s)	200, 730, 934
EcoRII	CCWGG	1 cut(s)	269
EcoT14I	CCWWGG	1 cut(s)	393
EcoT38I	GRGCYC	4 cut(s)	202, 361, 732, 936
ErhI	CCWWGG	1 cut(s)	393
FaeI	CATG	3 cut(s)	397, 613, 673
FaiI	YATR	9 cut(s)	91, 243, 276, 395, 443, 445, 611, 671, 913
FaqI	GGGAC	2 cut(s)	683, 752
FatI	CATG	3 cut(s)	393, 609, 669
Fnu4HI	GCNGC	4 cut(s)	49, 592, 597, 835
FriOI	GRGCYC	4 cut(s)	202, 361, 732, 936
Fsp4HI	GCNGC	4 cut(s)	49, 592, 597, 835
FspBI	CTAG	5 cut(s)	173, 246, 296, 327, 503
GlaI	GCGC	4 cut(s)	384, 595, 664, 897
GluI	GCNGC	4 cut(s)	49, 592, 597, 835
GsaI	CCCAGC	1 cut(s)	851
GsuI	CTGGAG	1 cut(s)	420
HaeIII	GGCC	8 cut(s)	122, 143, 155, 164, 225, 392, 675, 860
HapII	CCGG	6 cut(s)	35, 45, 167, 666, 680, 822
HgaI	GACGC	4 cut(s)	374, 588, 613, 867
HhaI	GCGC	4 cut(s)	385, 596, 665, 898
Hin1I	GRCGYC	3 cut(s)	599, 624, 878
Hin1II	CATG	3 cut(s)	397, 613, 673
Hin6I	GCGC	4 cut(s)	383, 594, 663, 896
HinP1I	GCGC	4 cut(s)	383, 594, 663, 896
HincII	GTYRAC	1 cut(s)	721
HindII	GTYRAC	1 cut(s)	721
HindIII	AAGCTT	1 cut(s)	804
HinfI	GANTC	4 cut(s)	31, 301, 563, 886
HpaII	CCGG	6 cut(s)	35, 45, 167, 666, 680, 822
HphI	GGTGA	2 cut(s)	75, 284
Hpy166II	GTNNAC	4 cut(s)	127, 631, 721, 907
Hpy188I	TCNGA	2 cut(s)	538, 831
Hpy188III	TCNNGA	1 cut(s)	35
Hpy8I	GTNNAC	4 cut(s)	127, 631, 721, 907
Hpy99I	CGWCG	4 cut(s)	197, 629, 644, 728
HpyAV	CCTTC	1 cut(s)	481
HpyCH4III	ACNGT	8 cut(s)	87, 99, 131, 315, 495, 635, 790, 948
HpyCH4V	TGCA	2 cut(s)	455, 500
HpyF10VI	GCNNNNNNNGC	6 cut(s)	57, 161, 389, 497, 524, 621
HpyF3I	CTNAG	3 cut(s)	480, 587, 830
Hsp92I	GRCGYC	3 cut(s)	599, 624, 878
Hsp92II	CATG	3 cut(s)	397, 613, 673
HspAI	GCGC	4 cut(s)	383, 594, 663, 896
Kpn2I	TCCGGA	1 cut(s)	34
KroI	GCCGGC	1 cut(s)	665
KroNI	GCCGGC	1 cut(s)	667
Kzo9I	GATC	5 cut(s)	134, 237, 256, 319, 772
LmnI	GCTCC	4 cut(s)	197, 401, 419, 931
Lsp1109I	GCAGC	2 cut(s)	603, 821
LweI	GCATC	1 cut(s)	786
MaeI	CTAG	5 cut(s)	173, 246, 296, 327, 503
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	5 cut(s)	136, 239, 258, 321, 774
MboI	GATC	5 cut(s)	134, 237, 256, 319, 772
MboII	GAAGA	3 cut(s)	69, 525, 594
MhlI	GDGCHC	4 cut(s)	202, 361, 732, 936
MlsI	TGGCCA	1 cut(s)	392
MluCI	AATT	1 cut(s)	148
MluNI	TGGCCA	1 cut(s)	392
MlyI	GAGTC	1 cut(s)	557
MmeI	TCCRAC	2 cut(s)	30, 192
Mox20I	TGGCCA	1 cut(s)	392
MroI	TCCGGA	1 cut(s)	34
MroNI	GCCGGC	1 cut(s)	665
MscI	TGGCCA	1 cut(s)	392
MseI	TTAA	1 cut(s)	264
Msp20I	TGGCCA	1 cut(s)	392
MspI	CCGG	6 cut(s)	35, 45, 167, 666, 680, 822
MspR9I	CCNGG	3 cut(s)	167, 271, 680
MvaI	CCWGG	1 cut(s)	271
MvnI	CGCG	3 cut(s)	385, 596, 663
MwoI	GCNNNNNNNGC	6 cut(s)	57, 161, 389, 497, 524, 621
NaeI	GCCGGC	1 cut(s)	667
NciI	CCSGG	2 cut(s)	167, 680
NcoI	CCATGG	1 cut(s)	393
NdeII	GATC	5 cut(s)	134, 237, 256, 319, 772
NgoMIV	GCCGGC	1 cut(s)	665
NlaIII	CATG	3 cut(s)	397, 613, 673
NlaIV	GGNNCC	2 cut(s)	52, 165
NmeAIII	GCCGAG	1 cut(s)	915
NmuCI	GTSAC	1 cut(s)	376
PceI	AGGCCT	1 cut(s)	225
PcsI	WCGNNNNNNNCGW	2 cut(s)	729, 786
PdiI	GCCGGC	1 cut(s)	667
PfeI	GAWTC	3 cut(s)	31, 301, 886
PkrI	GCNGC	4 cut(s)	50, 593, 598, 836
Ple19I	CGATCG	1 cut(s)	775
PleI	GAGTC	1 cut(s)	557
PpsI	GAGTC	1 cut(s)	557
Psp124BI	GAGCTC	3 cut(s)	202, 732, 936
Psp6I	CCWGG	1 cut(s)	269
PspFI	CCCAGC	1 cut(s)	847
PspGI	CCWGG	1 cut(s)	269
PspN4I	GGNNCC	2 cut(s)	52, 165
PspPI	GGNCC	4 cut(s)	141, 163, 169, 673
PvuI	CGATCG	1 cut(s)	775
RsaI	GTAC	3 cut(s)	126, 800, 908
RsaNI	GTAC	3 cut(s)	125, 799, 907
SacI	GAGCTC	3 cut(s)	202, 732, 936
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	4 cut(s)	49, 592, 597, 835
Sau3AI	GATC	5 cut(s)	134, 237, 256, 319, 772
Sau96I	GGNCC	4 cut(s)	141, 163, 169, 673
SchI	GAGTC	1 cut(s)	557
ScrFI	CCNGG	3 cut(s)	167, 271, 680
SduI	GDGCHC	4 cut(s)	202, 361, 732, 936
SfaNI	GCATC	1 cut(s)	786
SfiI	GGCCNNNNNGGCC	1 cut(s)	161
SinI	GGWCC	1 cut(s)	169
SpeI	ACTAGT	1 cut(s)	245
Sse9I	AATT	1 cut(s)	148
SseBI	AGGCCT	1 cut(s)	225
SsiI	CCGC	7 cut(s)	48, 347, 596, 615, 655, 661, 939
SspI	AATATT	1 cut(s)	23
SspMI	CTAG	5 cut(s)	173, 246, 296, 327, 503
SstI	GAGCTC	3 cut(s)	202, 732, 936
StuI	AGGCCT	1 cut(s)	225
StyD4I	CCNGG	3 cut(s)	165, 269, 678
StyI	CCWWGG	1 cut(s)	393
TaaI	ACNGT	8 cut(s)	87, 99, 131, 315, 495, 635, 790, 948
TaqI	TCGA	3 cut(s)	29, 137, 771
TasI	AATT	1 cut(s)	148
TauI	GCSGC	2 cut(s)	51, 599
TfiI	GAWTC	3 cut(s)	31, 301, 886
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	1 cut(s)	498
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	2 cut(s)	591, 834
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	2 cut(s)	291, 293
TspGWI	ACGGA	3 cut(s)	210, 628, 879
TspRI	CASTG	1 cut(s)	498
VpaK11BI	GGWCC	1 cut(s)	169
XspI	CTAG	5 cut(s)	173, 246, 296, 327, 503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.