Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000065.1

Orthogroup ID

OG0025448

Physical Location & Seq

Genomic Coordinates Forward (+)

15059 .. 15511

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000065.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

atgttttgtattgtacagaatgactggtcagttgtaaaacgaggctgggatgcccaagttctcggtgaagccccctataaatttaagaatgttgttgaagctatcaagacattgagagcagaaccaaatgccaatgaccagtatctaccttcttttgttattgttgatgacagtggaaagcctgtgggcccaatagttgacggtgatgcagttgtaacattcaacttccgagcagatggtatggtcatggctgctaaggcatttgagtatgcagattttgataaattcgatagagttcgagttcctaaaatccactatgctggtatggttcagtatgatggtgagctgaagcttccaacccgttaccttgtagaacccccagagattgatagaacatccggggaatatctaacttacaacggtgtccgtactttgcctgcaggtgaattttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004619 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0010118 GO:0016020 GO:0016853 GO:0016866 GO:0016868 GO:0030054 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046537 GO:0046686 GO:0048046 GO:0048229 GO:0048856 GO:0050896 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Metalloenzyme iPGM_N

Protein Analysis

150

Amino Acids

16.89

Weight (kDa)

4.89

Isoelectric Point (pI)

24.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025448)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_ssc0000065.1_g000006
rosa_samantha	Rh3AG133300 Rh3BG154400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	431
Acc36I	ACCTGC	1 cut(s)	431
AcsI	RAATTY	3 cut(s)	80, 284, 446
AcuI	CTGAAG	1 cut(s)	368
AfaI	GTAC	2 cut(s)	15, 430
AgsI	TTSAA	2 cut(s)	98, 223
AluBI	AGCT	3 cut(s)	101, 346, 352
AluI	AGCT	3 cut(s)	101, 346, 352
AoxI	GGCC	1 cut(s)	187
ApaI	GGGCCC	1 cut(s)	191
ApeKI	GCWGC	1 cut(s)	251
ApoI	RAATTY	3 cut(s)	80, 284, 446
AspS9I	GGNCC	2 cut(s)	187, 188
AsuC2I	CCSGG	1 cut(s)	400
AsuHPI	GGTGA	3 cut(s)	77, 215, 353
BaeGI	GKGCMC	1 cut(s)	191
BanII	GRGCYC	1 cut(s)	191
BbvI	GCAGC	1 cut(s)	238
BccI	CCATC	2 cut(s)	230, 332
BcnI	CCSGG	1 cut(s)	400
BfmI	CTRYAG	1 cut(s)	438
BfuAI	ACCTGC	1 cut(s)	431
BisI	GCNGC	1 cut(s)	252
BlsI	GCNGC	1 cut(s)	253
Bme1390I	CCNGG	1 cut(s)	400
BmgT120I	GGNCC	2 cut(s)	187, 188
BmiI	GGNNCC	1 cut(s)	189
BmrFI	CCNGG	1 cut(s)	400
BmsI	GCATC	2 cut(s)	40, 196
Bpu10I	CCTNAGC	1 cut(s)	255
BpuMI	CCSGG	1 cut(s)	400
BsaJI	CCNNGG	1 cut(s)	399
Bse1I	ACTGG	2 cut(s)	29, 139
BseDI	CCNNGG	1 cut(s)	399
BseGI	GGATG	2 cut(s)	55, 395
BseNI	ACTGG	2 cut(s)	29, 139
BseSI	GKGCMC	1 cut(s)	191
BseXI	GCAGC	1 cut(s)	238
BseYI	CCCAGC	1 cut(s)	45
BshFI	GGCC	1 cut(s)	189
BsiSI	CCGG	1 cut(s)	399
BsnI	GGCC	1 cut(s)	189
Bsp120I	GGGCCC	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	191
Bsp1407I	TGTACA	1 cut(s)	13
BspANI	GGCC	1 cut(s)	189
BspLI	GGNNCC	1 cut(s)	189
BspMAI	CTGCAG	1 cut(s)	442
BspMI	ACCTGC	1 cut(s)	431
BsrGI	TGTACA	1 cut(s)	13
BsrI	ACTGG	2 cut(s)	29, 139
BssECI	CCNNGG	1 cut(s)	399
Bst4CI	ACNGT	3 cut(s)	173, 203, 422
BstAUI	TGTACA	1 cut(s)	13
BstC8I	GCNNGC	1 cut(s)	438
BstDEI	CTNAG	1 cut(s)	255
BstF5I	GGATG	2 cut(s)	55, 395
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	398
BstSFI	CTRYAG	1 cut(s)	438
BstSLI	GKGCMC	1 cut(s)	191
BstV1I	GCAGC	1 cut(s)	238
BstXI	CCANNNNNNTGG	1 cut(s)	320
BsuRI	GGCC	1 cut(s)	189
BtsCI	GGATG	2 cut(s)	55, 395
BtsIMutI	CAGTG	1 cut(s)	178
BveI	ACCTGC	1 cut(s)	431
Cac8I	GCNNGC	1 cut(s)	438
Cfr13I	GGNCC	2 cut(s)	187, 188
Csp6I	GTAC	2 cut(s)	14, 429
CviAII	CATG	1 cut(s)	247
CviJI	RGCY	8 cut(s)	45, 71, 101, 181, 189, 251, 346, 352
CviKI_1	RGCY	8 cut(s)	45, 71, 101, 181, 189, 251, 346, 352
CviQI	GTAC	2 cut(s)	14, 429
DdeI	CTNAG	1 cut(s)	255
Eco24I	GRGCYC	1 cut(s)	191
Eco57I	CTGAAG	1 cut(s)	368
EcoT38I	GRGCYC	1 cut(s)	191
FaeI	CATG	1 cut(s)	250
FaiI	YATR	7 cut(s)	78, 242, 248, 270, 318, 326, 336
FatI	CATG	1 cut(s)	246
Fnu4HI	GCNGC	1 cut(s)	252
FokI	GGATG	2 cut(s)	62, 382
FriOI	GRGCYC	1 cut(s)	191
Fsp4HI	GCNGC	1 cut(s)	252
GluI	GCNGC	1 cut(s)	252
GsaI	CCCAGC	1 cut(s)	49
HaeIII	GGCC	1 cut(s)	189
HapII	CCGG	1 cut(s)	399
Hin1II	CATG	1 cut(s)	250
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HindIII	AAGCTT	1 cut(s)	350
HpaII	CCGG	1 cut(s)	399
HphI	GGTGA	3 cut(s)	77, 215, 353
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	1 cut(s)	230
Hpy188III	TCNNGA	1 cut(s)	106
Hpy8I	GTNNAC	1 cut(s)	199
HpyAV	CCTTC	1 cut(s)	159
HpyCH4III	ACNGT	3 cut(s)	173, 203, 422
HpyCH4V	TGCA	3 cut(s)	209, 272, 440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
HpyF3I	CTNAG	1 cut(s)	255
Hsp92II	CATG	1 cut(s)	250
LpnPI	CCDG	8 cut(s)	10, 31, 152, 195, 306, 393, 412, 426
Lsp1109I	GCAGC	1 cut(s)	238
LweI	GCATC	2 cut(s)	40, 196
MaeIII	GTNAC	2 cut(s)	214, 362
MhlI	GDGCHC	1 cut(s)	191
MluCI	AATT	3 cut(s)	80, 284, 446
MmeI	TCCRAC	1 cut(s)	380
MnlI	CCTC	1 cut(s)	35
MseI	TTAA	2 cut(s)	84, 451
MspI	CCGG	1 cut(s)	399
MspR9I	CCNGG	1 cut(s)	400
MwoI	GCNNNNNNNGC	1 cut(s)	257
NciI	CCSGG	1 cut(s)	400
NlaIII	CATG	1 cut(s)	250
NlaIV	GGNNCC	1 cut(s)	189
PaqCI	CACCTGC	1 cut(s)	431
PkrI	GCNGC	1 cut(s)	253
PspFI	CCCAGC	1 cut(s)	45
PspN4I	GGNNCC	1 cut(s)	189
PspOMI	GGGCCC	1 cut(s)	187
PspPI	GGNCC	2 cut(s)	187, 188
PstI	CTGCAG	1 cut(s)	442
RsaI	GTAC	2 cut(s)	15, 430
RsaNI	GTAC	2 cut(s)	14, 429
SaqAI	TTAA	2 cut(s)	84, 451
SatI	GCNGC	1 cut(s)	252
Sau96I	GGNCC	2 cut(s)	187, 188
SbfI	CCTGCAGG	1 cut(s)	442
ScrFI	CCNGG	1 cut(s)	400
SdaI	CCTGCAGG	1 cut(s)	442
SduI	GDGCHC	1 cut(s)	191
SetI	ASST	6 cut(s)	103, 151, 348, 354, 369, 445
SfaNI	GCATC	2 cut(s)	40, 196
SfcI	CTRYAG	1 cut(s)	438
Sse8387I	CCTGCAGG	1 cut(s)	442
Sse9I	AATT	3 cut(s)	80, 284, 446
StyD4I	CCNGG	1 cut(s)	398
TaaI	ACNGT	3 cut(s)	173, 203, 422
TaqI	TCGA	2 cut(s)	288, 298
TasI	AATT	3 cut(s)	80, 284, 446
TatI	WGTACW	1 cut(s)	13
Tru1I	TTAA	2 cut(s)	84, 451
Tru9I	TTAA	2 cut(s)	84, 451
TscAI	CASTG	1 cut(s)	178
TseI	GCWGC	1 cut(s)	251
TspGWI	ACGGA	1 cut(s)	416
TspRI	CASTG	1 cut(s)	178
XapI	RAATTY	3 cut(s)	80, 284, 446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.