Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0025448

Physical Location & Seq

Genomic Coordinates Reverse (-)

11527045 .. 11531250

Gene Structure 4206 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG133300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGCTATTCCTGTTCACAGTAGCACCTGGATTAGAATTCCAGAATGACTGGTCAGTTGTAAAACGAGGCTGGGATGCCCAAGTTCTCGGTGAAGCCCCCTATAAATTTAAGAATGTTGTTGAAGCTATCAAGACATTGAGAGCAGAACCAAATGCCAATGACCAGTATCTACCTCCTTTTGTTATTGTTGATGACAGTGGAAAGCCTGTGGGCCCAATAGTTGATGGTGATGCTGTTGTAACATTCAACTTCCGAGCAGATAGTATGGTCATGGCTGCTAAGGCATTTGAGTATGCAGATTTTGATAAATTCGATAGAGTTCGAGTTCCTAAAATCCACTATGCTGGTATGGTTCAGTATGATGGTGAGCTGAAGCTTCCAACCAGTTACCTTGTAGAACCCCCAGAGATTGATAGAACATCCGGGGAATATCTAACTTACAACGGTGTCCGTACTTTGCCTGCAGTGAGACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004619 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0010118 GO:0016020 GO:0016853 GO:0016866 GO:0016868 GO:0030054 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046537 GO:0046686 GO:0048046 GO:0048229 GO:0048856 GO:0050896 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Metalloenzyme iPGM_N

Protein Analysis

158

Amino Acids

17.77

Weight (kDa)

4.89

Isoelectric Point (pI)

29.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
iPGM_N	PF06415	15 - 121	3.9e-22	BPG-independent PGAM N-terminus (iPGM_N)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0025448)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_ssc0000065.1_g000006
rosa_samantha	Rh3AG133300 Rh3BG154400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	35, 104, 308
AcuI	CTGAAG	1 cut(s)	392
AfaI	GTAC	1 cut(s)	454
AgsI	TTSAA	2 cut(s)	122, 247
AjnI	CCWGG	1 cut(s)	25
AluBI	AGCT	3 cut(s)	125, 370, 376
AluI	AGCT	3 cut(s)	125, 370, 376
Alw26I	GTCTC	1 cut(s)	463
AoxI	GGCC	1 cut(s)	211
ApaI	GGGCCC	1 cut(s)	215
ApeKI	GCWGC	1 cut(s)	275
ApoI	RAATTY	3 cut(s)	35, 104, 308
AspS9I	GGNCC	2 cut(s)	211, 212
AsuC2I	CCSGG	1 cut(s)	424
AsuHPI	GGTGA	3 cut(s)	101, 239, 377
BaeGI	GKGCMC	1 cut(s)	215
BanII	GRGCYC	1 cut(s)	215
BbvI	GCAGC	1 cut(s)	262
BccI	CCATC	2 cut(s)	218, 356
BciT130I	CCWGG	1 cut(s)	27
BcnI	CCSGG	1 cut(s)	424
BcoDI	GTCTC	1 cut(s)	463
BfmI	CTRYAG	1 cut(s)	462
BisI	GCNGC	1 cut(s)	276
BlsI	GCNGC	1 cut(s)	277
Bme1390I	CCNGG	2 cut(s)	27, 424
BmgT120I	GGNCC	2 cut(s)	211, 212
BmiI	GGNNCC	1 cut(s)	213
BmrFI	CCNGG	2 cut(s)	27, 424
BmsI	GCATC	2 cut(s)	64, 220
Bpu10I	CCTNAGC	1 cut(s)	279
BpuMI	CCSGG	1 cut(s)	424
BsaJI	CCNNGG	1 cut(s)	423
Bse1I	ACTGG	3 cut(s)	53, 163, 384
BseBI	CCWGG	1 cut(s)	27
BseDI	CCNNGG	1 cut(s)	423
BseGI	GGATG	2 cut(s)	79, 419
BseNI	ACTGG	3 cut(s)	53, 163, 384
BseSI	GKGCMC	1 cut(s)	215
BseXI	GCAGC	1 cut(s)	262
BseYI	CCCAGC	1 cut(s)	69
BshFI	GGCC	1 cut(s)	213
BsiSI	CCGG	1 cut(s)	423
BsmAI	GTCTC	1 cut(s)	463
BsnI	GGCC	1 cut(s)	213
Bsp120I	GGGCCC	1 cut(s)	211
Bsp1286I	GDGCHC	1 cut(s)	215
BspANI	GGCC	1 cut(s)	213
BspLI	GGNNCC	1 cut(s)	213
BspMAI	CTGCAG	1 cut(s)	466
BsrI	ACTGG	3 cut(s)	53, 163, 384
BssECI	CCNNGG	1 cut(s)	423
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	4 cut(s)	19, 197, 446, 474
BstC8I	GCNNGC	1 cut(s)	462
BstDEI	CTNAG	1 cut(s)	279
BstF5I	GGATG	2 cut(s)	79, 419
BstMAI	GTCTC	1 cut(s)	463
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstNI	CCWGG	1 cut(s)	27
BstSCI	CCNGG	2 cut(s)	25, 422
BstSFI	CTRYAG	1 cut(s)	462
BstSLI	GKGCMC	1 cut(s)	215
BstV1I	GCAGC	1 cut(s)	262
BstXI	CCANNNNNNTGG	1 cut(s)	344
BsuRI	GGCC	1 cut(s)	213
BtsCI	GGATG	2 cut(s)	79, 419
BtsI	GCAGTG	1 cut(s)	471
BtsIMutI	CAGTG	2 cut(s)	202, 471
Cac8I	GCNNGC	1 cut(s)	462
Cfr13I	GGNCC	2 cut(s)	211, 212
Csp6I	GTAC	1 cut(s)	453
CviAII	CATG	1 cut(s)	271
CviJI	RGCY	8 cut(s)	69, 95, 125, 205, 213, 275, 370, 376
CviKI_1	RGCY	8 cut(s)	69, 95, 125, 205, 213, 275, 370, 376
CviQI	GTAC	1 cut(s)	453
DdeI	CTNAG	1 cut(s)	279
Eco24I	GRGCYC	1 cut(s)	215
Eco57I	CTGAAG	1 cut(s)	392
EcoRI	GAATTC	1 cut(s)	35
EcoRII	CCWGG	1 cut(s)	25
EcoT38I	GRGCYC	1 cut(s)	215
FaeI	CATG	1 cut(s)	274
FaiI	YATR	7 cut(s)	102, 266, 272, 294, 342, 350, 360
FatI	CATG	1 cut(s)	270
Fnu4HI	GCNGC	1 cut(s)	276
FokI	GGATG	2 cut(s)	86, 406
FriOI	GRGCYC	1 cut(s)	215
Fsp4HI	GCNGC	1 cut(s)	276
GluI	GCNGC	1 cut(s)	276
GsaI	CCCAGC	1 cut(s)	73
HaeIII	GGCC	1 cut(s)	213
HapII	CCGG	1 cut(s)	423
Hin1II	CATG	1 cut(s)	274
HindIII	AAGCTT	1 cut(s)	374
HpaII	CCGG	1 cut(s)	423
HphI	GGTGA	3 cut(s)	101, 239, 377
Hpy166II	GTNNAC	1 cut(s)	15
Hpy188I	TCNGA	1 cut(s)	254
Hpy188III	TCNNGA	2 cut(s)	40, 130
Hpy8I	GTNNAC	1 cut(s)	15
HpyCH4III	ACNGT	4 cut(s)	19, 197, 446, 474
HpyCH4V	TGCA	2 cut(s)	296, 464
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	1 cut(s)	279
Hsp92II	CATG	1 cut(s)	274
Lsp1109I	GCAGC	1 cut(s)	262
LweI	GCATC	2 cut(s)	64, 220
MaeIII	GTNAC	2 cut(s)	238, 386
MhlI	GDGCHC	1 cut(s)	215
MluCI	AATT	3 cut(s)	35, 104, 308
MmeI	TCCRAC	1 cut(s)	404
MnlI	CCTC	2 cut(s)	59, 183
MseI	TTAA	1 cut(s)	108
MspI	CCGG	1 cut(s)	423
MspR9I	CCNGG	2 cut(s)	27, 424
MvaI	CCWGG	1 cut(s)	27
MwoI	GCNNNNNNNGC	1 cut(s)	281
NciI	CCSGG	1 cut(s)	424
NlaIII	CATG	1 cut(s)	274
NlaIV	GGNNCC	1 cut(s)	213
PkrI	GCNGC	1 cut(s)	277
Psp6I	CCWGG	1 cut(s)	25
PspFI	CCCAGC	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	25
PspN4I	GGNNCC	1 cut(s)	213
PspOMI	GGGCCC	1 cut(s)	211
PspPI	GGNCC	2 cut(s)	211, 212
PstI	CTGCAG	1 cut(s)	466
RsaI	GTAC	1 cut(s)	454
RsaNI	GTAC	1 cut(s)	453
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	1 cut(s)	276
Sau96I	GGNCC	2 cut(s)	211, 212
ScrFI	CCNGG	2 cut(s)	27, 424
SduI	GDGCHC	1 cut(s)	215
SetI	ASST	6 cut(s)	28, 127, 175, 372, 378, 393
SfaNI	GCATC	2 cut(s)	64, 220
SfcI	CTRYAG	1 cut(s)	462
Sse9I	AATT	3 cut(s)	35, 104, 308
StyD4I	CCNGG	2 cut(s)	25, 422
TaaI	ACNGT	4 cut(s)	19, 197, 446, 474
TaqI	TCGA	2 cut(s)	312, 322
TasI	AATT	3 cut(s)	35, 104, 308
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TscAI	CASTG	2 cut(s)	202, 471
TseI	GCWGC	1 cut(s)	275
TspGWI	ACGGA	1 cut(s)	440
TspRI	CASTG	2 cut(s)	202, 471
XapI	RAATTY	3 cut(s)	35, 104, 308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.