Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000093.1

Orthogroup ID

OG0024463

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 931

Gene Structure 931 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 583 bp

atggaagtgccaatcctcggcagcgattcactgaaatggattgagttccctattccttcttctaatgccgccaccgctaccgccaccgccgatgctgatacttgtgcccctctcactcacgattgctcttcttccatcgccattggcgaccctcctacacatctcatatggagaatccacaagcatctccctcactctctcgaattacttgagctctctgctaacaaagaatttccaaaactcggactgcgaatcacttttccacaagcactctcttccttcgtttttctttgcaaaaatgagattgatgtcggttccgggagccacccctatttgctctatgcattgaccgttgccggagtcgcttaccttttgagacttggaaccgtctccagttatgcatccaactctgttattagagagtttagcttgcatccctacggacctataaccagtgccgcagcaacgccaaccggatgtcttgttgtaggtcggaatgatggctcacttgcttgctttcaactcacacttgaatccactgctcctggttttctgcaagagctacgggatgatccaggaatcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008104 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016973 GO:0031090 GO:0031503 GO:0031965 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0034613 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

DUF5311 Nup160

Protein Analysis

194

Amino Acids

20.71

Weight (kDa)

5.37

Isoelectric Point (pI)

41.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_Nup120_160	PF11715	55 - 178	7.5e-09	Nucleoporin Nup120/160, beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0024463)

Species	Orthologous Gene IDs
malus_domestica	MD05G1161300.v1.1 MD05G1162900.v1.1
rosa_multiflora	Rmu_ssc0000093.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	69, 75, 81, 87, 459
AclWI	GGATC	1 cut(s)	566
AcsI	RAATTY	1 cut(s)	230
AfiI	CCNNNNNNNGG	2 cut(s)	17, 242
AgsI	TTSAA	2 cut(s)	521, 533
AjnI	CCWGG	2 cut(s)	544, 574
AluBI	AGCT	3 cut(s)	214, 429, 562
AluI	AGCT	3 cut(s)	214, 429, 562
Alw21I	GWGCWC	1 cut(s)	216
Alw26I	GTCTC	2 cut(s)	370, 394
AlwI	GGATC	1 cut(s)	566
ApeKI	GCWGC	2 cut(s)	21, 461
ApoI	RAATTY	1 cut(s)	230
AspS9I	GGNCC	1 cut(s)	443
AsuC2I	CCSGG	1 cut(s)	319
AvaII	GGWCC	1 cut(s)	443
BaeGI	GKGCMC	1 cut(s)	109
BanII	GRGCYC	1 cut(s)	216
Bbv12I	GWGCWC	1 cut(s)	216
BbvI	GCAGC	2 cut(s)	33, 473
BccI	CCATC	2 cut(s)	143, 494
BciT130I	CCWGG	2 cut(s)	546, 576
BcnI	CCSGG	1 cut(s)	319
BcoDI	GTCTC	2 cut(s)	370, 394
BisI	GCNGC	4 cut(s)	22, 69, 459, 462
BlsI	GCNGC	4 cut(s)	23, 70, 460, 463
Bme1390I	CCNGG	3 cut(s)	319, 546, 576
Bme18I	GGWCC	1 cut(s)	443
BmgT120I	GGNCC	1 cut(s)	443
BmiI	GGNNCC	3 cut(s)	316, 323, 385
BmrFI	CCNGG	3 cut(s)	319, 546, 576
BmsI	GCATC	4 cut(s)	82, 193, 410, 442
BpmI	CTGGAG	1 cut(s)	376
BpuEI	CTTGAG	1 cut(s)	230
BpuMI	CCSGG	1 cut(s)	319
BsaJI	CCNNGG	1 cut(s)	16
BsaWI	WCCGGW	1 cut(s)	473
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 242
Bse1I	ACTGG	2 cut(s)	393, 453
BseBI	CCWGG	2 cut(s)	546, 576
BseDI	CCNNGG	1 cut(s)	16
BseGI	GGATG	4 cut(s)	401, 433, 482, 574
BseLI	CCNNNNNNNGG	2 cut(s)	17, 242
BseNI	ACTGG	2 cut(s)	393, 453
BseSI	GKGCMC	1 cut(s)	109
BseXI	GCAGC	2 cut(s)	33, 473
BsiHKAI	GWGCWC	1 cut(s)	216
BsiSI	CCGG	3 cut(s)	318, 357, 474
BslI	CCNNNNNNNGG	2 cut(s)	17, 242
BsmAI	GTCTC	2 cut(s)	370, 394
BsmBI	CGTCTC	1 cut(s)	394
Bsp1286I	GDGCHC	2 cut(s)	109, 216
Bsp143I	GATC	1 cut(s)	571
BspACI	CCGC	5 cut(s)	69, 75, 81, 87, 459
BspLI	GGNNCC	3 cut(s)	316, 323, 385
BspPI	GGATC	1 cut(s)	566
BspQI	GCTCTTC	1 cut(s)	133
BsrI	ACTGG	2 cut(s)	393, 453
BssECI	CCNNGG	1 cut(s)	16
BssMI	GATC	1 cut(s)	571
Bst2UI	CCWGG	2 cut(s)	546, 576
Bst4CI	ACNGT	2 cut(s)	352, 388
Bst6I	CTCTTC	2 cut(s)	133, 280
BstC8I	GCNNGC	2 cut(s)	431, 514
BstF5I	GGATG	4 cut(s)	401, 433, 482, 574
BstKTI	GATC	1 cut(s)	574
BstMAI	GTCTC	2 cut(s)	370, 394
BstMBI	GATC	1 cut(s)	571
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 362
BstNI	CCWGG	2 cut(s)	546, 576
BstSCI	CCNGG	3 cut(s)	317, 544, 574
BstSLI	GKGCMC	1 cut(s)	109
BstV1I	GCAGC	2 cut(s)	33, 473
BtgZI	GCGATG	1 cut(s)	121
BtsCI	GGATG	4 cut(s)	401, 433, 482, 574
BtsI	GCAGTG	1 cut(s)	537
BtsIMutI	CAGTG	3 cut(s)	29, 460, 537
Cac8I	GCNNGC	2 cut(s)	431, 514
Cfr13I	GGNCC	1 cut(s)	443
CviJI	RGCY	5 cut(s)	214, 324, 429, 504, 562
CviKI_1	RGCY	5 cut(s)	214, 324, 429, 504, 562
DpnI	GATC	1 cut(s)	573
DpnII	GATC	1 cut(s)	571
Eam1104I	CTCTTC	2 cut(s)	133, 280
EarI	CTCTTC	2 cut(s)	133, 280
Ecl136II	GAGCTC	1 cut(s)	214
Eco24I	GRGCYC	1 cut(s)	216
Eco47I	GGWCC	1 cut(s)	443
Eco53kI	GAGCTC	1 cut(s)	214
EcoICRI	GAGCTC	1 cut(s)	214
EcoRII	CCWGG	2 cut(s)	544, 574
EcoT22I	ATGCAT	2 cut(s)	346, 403
EcoT38I	GRGCYC	1 cut(s)	216
Esp3I	CGTCTC	1 cut(s)	394
FaiI	YATR	5 cut(s)	167, 169, 342, 399, 449
FauNDI	CATATG	1 cut(s)	167
Fnu4HI	GCNGC	4 cut(s)	22, 69, 459, 462
FokI	GGATG	3 cut(s)	388, 420, 489
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	4 cut(s)	22, 69, 459, 462
GluI	GCNGC	4 cut(s)	22, 69, 459, 462
GsuI	CTGGAG	1 cut(s)	376
HapII	CCGG	3 cut(s)	318, 357, 474
HinfI	GANTC	6 cut(s)	26, 174, 252, 360, 533, 579
HpaII	CCGG	3 cut(s)	318, 357, 474
Hpy188I	TCNGA	2 cut(s)	245, 495
Hpy188III	TCNNGA	2 cut(s)	119, 200
HpyAV	CCTTC	2 cut(s)	66, 289
HpyCH4III	ACNGT	2 cut(s)	352, 388
HpyCH4V	TGCA	5 cut(s)	294, 344, 401, 433, 556
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 362
Kzo9I	GATC	1 cut(s)	571
LguI	GCTCTTC	1 cut(s)	133
LmnI	GCTCC	2 cut(s)	321, 547
LpnPI	CCDG	8 cut(s)	331, 370, 406, 466, 487, 531, 558, 561
Lsp1109I	GCAGC	2 cut(s)	33, 473
LweI	GCATC	4 cut(s)	82, 193, 410, 442
MalI	GATC	1 cut(s)	573
MboI	GATC	1 cut(s)	571
MboII	GAAGA	4 cut(s)	51, 120, 123, 267
MhlI	GDGCHC	2 cut(s)	109, 216
MluCI	AATT	2 cut(s)	203, 230
MlyI	GAGTC	1 cut(s)	369
MmeI	TCCRAC	2 cut(s)	429, 473
MnlI	CCTC	4 cut(s)	26, 120, 162, 201
Mph1103I	ATGCAT	2 cut(s)	346, 403
MslI	CAYNNNNRTG	1 cut(s)	34
MspI	CCGG	3 cut(s)	318, 357, 474
MspR9I	CCNGG	3 cut(s)	319, 546, 576
MvaI	CCWGG	2 cut(s)	546, 576
MwoI	GCNNNNNNNGC	2 cut(s)	74, 362
NciI	CCSGG	1 cut(s)	319
NdeI	CATATG	1 cut(s)	167
NdeII	GATC	1 cut(s)	571
NlaIV	GGNNCC	3 cut(s)	316, 323, 385
NsiI	ATGCAT	2 cut(s)	346, 403
PciSI	GCTCTTC	1 cut(s)	133
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PfeI	GAWTC	5 cut(s)	26, 174, 252, 533, 579
PfoI	TCCNGGA	2 cut(s)	317, 574
PkrI	GCNGC	4 cut(s)	23, 70, 460, 463
PleI	GAGTC	1 cut(s)	368
PpsI	GAGTC	1 cut(s)	368
Psp124BI	GAGCTC	1 cut(s)	216
Psp6I	CCWGG	2 cut(s)	544, 574
PspGI	CCWGG	2 cut(s)	544, 574
PspN4I	GGNNCC	3 cut(s)	316, 323, 385
PspPI	GGNCC	1 cut(s)	443
RseI	CAYNNNNRTG	1 cut(s)	34
SacI	GAGCTC	1 cut(s)	216
SapI	GCTCTTC	1 cut(s)	133
SatI	GCNGC	4 cut(s)	22, 69, 459, 462
Sau3AI	GATC	1 cut(s)	571
Sau96I	GGNCC	1 cut(s)	443
SchI	GAGTC	1 cut(s)	369
ScrFI	CCNGG	3 cut(s)	319, 546, 576
SduI	GDGCHC	2 cut(s)	109, 216
SetI	ASST	6 cut(s)	216, 372, 431, 448, 493, 564
SfaNI	GCATC	4 cut(s)	82, 193, 410, 442
SinI	GGWCC	1 cut(s)	443
SmiMI	CAYNNNNRTG	1 cut(s)	34
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	2 cut(s)	203, 230
SsiI	CCGC	5 cut(s)	69, 75, 81, 87, 459
SstI	GAGCTC	1 cut(s)	216
StyD4I	CCNGG	3 cut(s)	317, 544, 574
TaaI	ACNGT	2 cut(s)	352, 388
TaqI	TCGA	1 cut(s)	201
TasI	AATT	2 cut(s)	203, 230
TauI	GCSGC	2 cut(s)	71, 461
TfiI	GAWTC	5 cut(s)	26, 174, 252, 533, 579
TscAI	CASTG	3 cut(s)	36, 460, 544
TseI	GCWGC	2 cut(s)	21, 461
TspGWI	ACGGA	1 cut(s)	456
TspRI	CASTG	3 cut(s)	36, 460, 544
VpaK11BI	GGWCC	1 cut(s)	443
XapI	RAATTY	1 cut(s)	230
Zsp2I	ATGCAT	2 cut(s)	346, 403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.