Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000112.1

Orthogroup ID

OG0025451

Physical Location & Seq

Genomic Coordinates Reverse (-)

93656 .. 94676

Gene Structure 1021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000112.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

atggcggactcgtcagggacgaccctgatggatctgataacggcggacccttccacctcctcaacgacaaagcctgctgtcgagaagaggtctaagagggctgcacttatgcagatccaaaacgacaccatctctgccgccaaagctgctctgaatcccatacgcaccaacatcatcatgccccataagcacaagcacaagcagaaaaagcctgttttgtatgctcaacttgcaaggagcattcacgaattagctgctacctccgatcatgtaccatcttctacaaatctccttacttgcttcttctctaatgcaacttgtgcttatttcttattcatctttgtcaatagaaaagttcccagaagcagttggtcgagtaatgagggaggtgtaatggaaagggatttggggttgttcgtatgggttagaatagagtcaaggtcactatgggaaattggctgccatgtgggccccactttgctgagttggaaatgccatgtcagcaggttaaaggctaaatttgacggaatgatgacggatgaacctattaaacgagaaatactagtgtggaggtgtttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SH3_1 SH3_9

Protein Analysis

193

Amino Acids

21.72

Weight (kDa)

9.64

Isoelectric Point (pI)

55.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025451)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_ssc0000112.1_g000018
rosa_roxburghii	Rroxscaffold_6G00421620
rosa_samantha	Rh6BG375500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	495
AciI	CCGC	3 cut(s)	5, 44, 138
AclWI	GGATC	2 cut(s)	39, 109
AcsI	RAATTY	1 cut(s)	518
AfaI	GTAC	1 cut(s)	273
AhlI	ACTAGT	1 cut(s)	562
AluBI	AGCT	2 cut(s)	146, 254
AluI	AGCT	2 cut(s)	146, 254
AlwI	GGATC	2 cut(s)	39, 109
AoxI	GGCC	1 cut(s)	469
ApaI	GGGCCC	1 cut(s)	473
ApeKI	GCWGC	4 cut(s)	101, 146, 254, 459
ApoI	RAATTY	1 cut(s)	518
AspS9I	GGNCC	3 cut(s)	46, 469, 470
AvaII	GGWCC	1 cut(s)	46
BaeGI	GKGCMC	1 cut(s)	473
BanII	GRGCYC	1 cut(s)	473
BbvI	GCAGC	4 cut(s)	88, 133, 241, 446
BccI	CCATC	3 cut(s)	22, 137, 283
BceAI	ACGGC	1 cut(s)	57
BcgI	CGANNNNNNTGC	2 cut(s)	236, 270
BcuI	ACTAGT	1 cut(s)	562
BfaI	CTAG	1 cut(s)	563
BfuAI	ACCTGC	1 cut(s)	495
BglI	GCCNNNNNGGC	1 cut(s)	468
BisI	GCNGC	5 cut(s)	102, 138, 147, 255, 460
BlsI	GCNGC	5 cut(s)	103, 139, 148, 256, 461
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	3 cut(s)	46, 469, 470
BmiI	GGNNCC	3 cut(s)	48, 471, 472
BseGI	GGATG	1 cut(s)	544
BseMII	CTCAG	1 cut(s)	473
BseRI	GAGGAG	1 cut(s)	49
BseSI	GKGCMC	1 cut(s)	473
BseXI	GCAGC	4 cut(s)	88, 133, 241, 446
BsgI	GTGCAG	1 cut(s)	87
BshFI	GGCC	1 cut(s)	471
BslFI	GGGAC	1 cut(s)	31
BsmFI	GGGAC	1 cut(s)	31
BsmI	GAATGC	1 cut(s)	240
BsnI	GGCC	1 cut(s)	471
Bsp120I	GGGCCC	1 cut(s)	469
Bsp1286I	GDGCHC	1 cut(s)	473
Bsp143I	GATC	3 cut(s)	31, 114, 265
BspACI	CCGC	3 cut(s)	5, 44, 138
BspANI	GGCC	1 cut(s)	471
BspCNI	CTCAG	1 cut(s)	474
BspLI	GGNNCC	3 cut(s)	48, 471, 472
BspMI	ACCTGC	1 cut(s)	495
BspPI	GGATC	2 cut(s)	39, 109
BssMI	GATC	3 cut(s)	31, 114, 265
Bst6I	CTCTTC	1 cut(s)	80
BstAPI	GCANNNNNTGC	1 cut(s)	320
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	2 cut(s)	93, 482
BstF5I	GGATG	1 cut(s)	544
BstKTI	GATC	3 cut(s)	34, 117, 268
BstMBI	GATC	3 cut(s)	31, 114, 265
BstMWI	GCNNNNNNNGC	8 cut(s)	143, 146, 187, 208, 230, 320, 468, 501
BstSLI	GKGCMC	1 cut(s)	473
BstV1I	GCAGC	4 cut(s)	88, 133, 241, 446
BstX2I	RGATCY	2 cut(s)	31, 114
BstYI	RGATCY	2 cut(s)	31, 114
BsuRI	GGCC	1 cut(s)	471
BtsCI	GGATG	1 cut(s)	544
BveI	ACCTGC	1 cut(s)	495
Cac8I	GCNNGC	1 cut(s)	75
Cfr13I	GGNCC	3 cut(s)	46, 469, 470
Csp6I	GTAC	1 cut(s)	272
CviAII	CATG	4 cut(s)	178, 269, 464, 497
CviJI	RGCY	8 cut(s)	73, 101, 146, 211, 254, 459, 471, 515
CviKI_1	RGCY	8 cut(s)	73, 101, 146, 211, 254, 459, 471, 515
CviQI	GTAC	1 cut(s)	272
DdeI	CTNAG	2 cut(s)	93, 482
DpnI	GATC	3 cut(s)	33, 116, 267
DpnII	GATC	3 cut(s)	31, 114, 265
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
EciI	GGCGGA	2 cut(s)	20, 59
Eco24I	GRGCYC	1 cut(s)	473
Eco47I	GGWCC	1 cut(s)	46
EcoO109I	RGGNCCY	1 cut(s)	470
EcoT38I	GRGCYC	1 cut(s)	473
FaeI	CATG	4 cut(s)	181, 272, 467, 500
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	4 cut(s)	177, 268, 463, 496
Fnu4HI	GCNGC	5 cut(s)	102, 138, 147, 255, 460
FokI	GGATG	1 cut(s)	551
FriOI	GRGCYC	1 cut(s)	473
Fsp4HI	GCNGC	5 cut(s)	102, 138, 147, 255, 460
FspBI	CTAG	1 cut(s)	563
GluI	GCNGC	5 cut(s)	102, 138, 147, 255, 460
HaeIII	GGCC	1 cut(s)	471
Hin1II	CATG	4 cut(s)	181, 272, 467, 500
HinfI	GANTC	3 cut(s)	8, 154, 434
Hpy188I	TCNGA	3 cut(s)	36, 153, 265
Hpy188III	TCNNGA	2 cut(s)	82, 245
HpyAV	CCTTC	1 cut(s)	60
HpyCH4V	TGCA	4 cut(s)	104, 112, 233, 314
HpyF10VI	GCNNNNNNNGC	8 cut(s)	143, 146, 187, 208, 230, 320, 468, 501
HpyF3I	CTNAG	2 cut(s)	93, 482
Hsp92II	CATG	4 cut(s)	181, 272, 467, 500
Kzo9I	GATC	3 cut(s)	31, 114, 265
LmnI	GCTCC	1 cut(s)	237
LpnPI	CCDG	5 cut(s)	38, 87, 225, 373, 490
Lsp1109I	GCAGC	4 cut(s)	88, 133, 241, 446
MaeI	CTAG	1 cut(s)	563
MaeIII	GTNAC	1 cut(s)	441
MalI	GATC	3 cut(s)	33, 116, 267
MboI	GATC	3 cut(s)	31, 114, 265
MboII	GAAGA	3 cut(s)	97, 270, 295
MflI	RGATCY	2 cut(s)	31, 114
MhlI	GDGCHC	1 cut(s)	473
MluCI	AATT	3 cut(s)	248, 453, 518
MlyI	GAGTC	2 cut(s)	2, 443
MmeI	TCCRAC	1 cut(s)	467
MnlI	CCTC	8 cut(s)	67, 70, 81, 90, 271, 376, 380, 564
MseI	TTAA	2 cut(s)	509, 549
MslI	CAYNNNNRTG	1 cut(s)	176
Mva1269I	GAATGC	1 cut(s)	240
MwoI	GCNNNNNNNGC	8 cut(s)	143, 146, 187, 208, 230, 320, 468, 501
NdeII	GATC	3 cut(s)	31, 114, 265
NlaIII	CATG	4 cut(s)	181, 272, 467, 500
NlaIV	GGNNCC	3 cut(s)	48, 471, 472
NmuCI	GTSAC	1 cut(s)	441
PcsI	WCGNNNNNNNCGW	1 cut(s)	17
PctI	GAATGC	1 cut(s)	240
PfeI	GAWTC	1 cut(s)	154
PkrI	GCNGC	5 cut(s)	103, 139, 148, 256, 461
PleI	GAGTC	2 cut(s)	2, 442
PpsI	GAGTC	2 cut(s)	2, 442
PspN4I	GGNNCC	3 cut(s)	48, 471, 472
PspOMI	GGGCCC	1 cut(s)	469
PspPI	GGNCC	3 cut(s)	46, 469, 470
PsuI	RGATCY	2 cut(s)	31, 114
RsaI	GTAC	1 cut(s)	273
RsaNI	GTAC	1 cut(s)	272
RseI	CAYNNNNRTG	1 cut(s)	176
SaqAI	TTAA	2 cut(s)	509, 549
SatI	GCNGC	5 cut(s)	102, 138, 147, 255, 460
Sau3AI	GATC	3 cut(s)	31, 114, 265
Sau96I	GGNCC	3 cut(s)	46, 469, 470
SchI	GAGTC	2 cut(s)	2, 443
SduI	GDGCHC	1 cut(s)	473
SinI	GGWCC	1 cut(s)	46
SmiMI	CAYNNNNRTG	1 cut(s)	176
SpeI	ACTAGT	1 cut(s)	562
Sse9I	AATT	3 cut(s)	248, 453, 518
SsiI	CCGC	3 cut(s)	5, 44, 138
SspMI	CTAG	1 cut(s)	563
TaqI	TCGA	2 cut(s)	81, 374
TasI	AATT	3 cut(s)	248, 453, 518
TauI	GCSGC	1 cut(s)	140
TfiI	GAWTC	1 cut(s)	154
Tru1I	TTAA	2 cut(s)	509, 549
Tru9I	TTAA	2 cut(s)	509, 549
TseFI	GTSAC	1 cut(s)	441
TseI	GCWGC	4 cut(s)	101, 146, 254, 459
Tsp45I	GTSAC	1 cut(s)	441
TspDTI	ATGAA	2 cut(s)	325, 555
TspGWI	ACGGA	2 cut(s)	540, 551
VpaK11BI	GGWCC	1 cut(s)	46
XapI	RAATTY	1 cut(s)	518
XspI	CTAG	1 cut(s)	563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.