Rh6BG375500

SH3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0025451
Physical Location & Seq
Forward (+)
60475916 .. 60476251
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG375500.1

Sequence Viewer

Length: 336 bp
ATGCGGCTTCACCCCCTACTGCCCAGAGGCACTAGCCCCAGCTCTGCTCTCGGAAAGCCTGTTGTCGAGAAGAGGTCCAAGAGGGCTGCGCTTATGCAGATCCAAAATGACACCATCTCTGCCGCCAAAGCTGCTCTGAATCCCGTACGCACCAACATCATCATGCCCAGAAGCACAAGCAGAAAAAGGTCCTCTCTTTCTTTGCATCTGTTGCTTTTGATATGGAGGTTTCGCGGACGAGAACCGCCGACGGCGGCCGGCAGTAGTAGCAGGGCTCGACGAGCTAGATCTGGAGTGTCGGATGATTTGGGTGGGAATGTTTGTGTGTGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SH3_1 SH3_9

Protein Analysis

111

Amino Acids

12.03

Weight (kDa)

11.95

Isoelectric Point (pI)

61.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0025451)

Species Orthologous Gene IDs
rosa_multiflora Rmu_ssc0000112.1_g000018
rosa_roxburghii Rroxscaffold_6G00421620
rosa_samantha Rh6BG375500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 234
AciI CCGC 5 cut(s) 4, 123, 234, 245, 254
AclWI GGATC 1 cut(s) 94
AcoI YGGCCR 1 cut(s) 255
AfaI GTAC 1 cut(s) 147
AluBI AGCT 3 cut(s) 42, 131, 284
AluI AGCT 3 cut(s) 42, 131, 284
AlwI GGATC 1 cut(s) 94
AoxI GGCC 1 cut(s) 255
ApeKI GCWGC 2 cut(s) 86, 131
AspLEI GCGC 1 cut(s) 91
AspS9I GGNCC 2 cut(s) 75, 189
AvaII GGWCC 2 cut(s) 75, 189
BanII GRGCYC 1 cut(s) 277
BbvI GCAGC 2 cut(s) 73, 118
BccI CCATC 1 cut(s) 122
BceAI ACGGC 1 cut(s) 267
BfaI CTAG 2 cut(s) 33, 285
BglII AGATCT 1 cut(s) 287
BisI GCNGC 5 cut(s) 5, 87, 123, 132, 255
BlsI GCNGC 5 cut(s) 6, 88, 124, 133, 256
Bme18I GGWCC 2 cut(s) 75, 189
BmgT120I GGNCC 2 cut(s) 75, 189
BmsI GCATC 1 cut(s) 214
BpmI CTGGAG 1 cut(s) 312
Bse118I RCCGGY 1 cut(s) 257
BseGI GGATG 1 cut(s) 307
BseX3I CGGCCG 1 cut(s) 255
BseXI GCAGC 2 cut(s) 73, 118
BseYI CCCAGC 1 cut(s) 38
Bsh1236I CGCG 1 cut(s) 234
Bsh1285I CGRYCG 1 cut(s) 258
BshFI GGCC 1 cut(s) 257
BsiEI CGRYCG 1 cut(s) 258
BsiSI CCGG 1 cut(s) 258
BsiWI CGTACG 1 cut(s) 145
BsnI GGCC 1 cut(s) 257
Bsp1286I GDGCHC 1 cut(s) 277
Bsp143I GATC 2 cut(s) 99, 287
BspACI CCGC 5 cut(s) 4, 123, 234, 245, 254
BspANI GGCC 1 cut(s) 257
BspFNI CGCG 1 cut(s) 234
BspPI GGATC 1 cut(s) 94
BsrFI RCCGGY 1 cut(s) 257
BssAI RCCGGY 1 cut(s) 257
BssMI GATC 2 cut(s) 99, 287
Bst6I CTCTTC 1 cut(s) 65
BstAPI GCANNNNNTGC 1 cut(s) 211
BstC8I GCNNGC 1 cut(s) 259
BstF5I GGATG 1 cut(s) 307
BstFNI CGCG 1 cut(s) 234
BstHHI GCGC 1 cut(s) 91
BstKTI GATC 2 cut(s) 102, 290
BstMBI GATC 2 cut(s) 99, 287
BstMCI CGRYCG 1 cut(s) 258
BstMWI GCNNNNNNNGC 5 cut(s) 128, 131, 211, 267, 281
BstUI CGCG 1 cut(s) 234
BstV1I GCAGC 2 cut(s) 73, 118
BstX2I RGATCY 2 cut(s) 99, 287
BstYI RGATCY 2 cut(s) 99, 287
BstZI CGGCCG 1 cut(s) 255
BsuRI GGCC 1 cut(s) 257
BtsCI GGATG 1 cut(s) 307
Cac8I GCNNGC 1 cut(s) 259
CfoI GCGC 1 cut(s) 91
Cfr10I RCCGGY 1 cut(s) 257
Cfr13I GGNCC 2 cut(s) 75, 189
Csp6I GTAC 1 cut(s) 146
CviAII CATG 1 cut(s) 163
CviJI RGCY 9 cut(s) 7, 36, 42, 58, 86, 131, 257, 275, 284
CviKI_1 RGCY 9 cut(s) 7, 36, 42, 58, 86, 131, 257, 275, 284
CviQI GTAC 1 cut(s) 146
DpnI GATC 2 cut(s) 101, 289
DpnII GATC 2 cut(s) 99, 287
EaeI YGGCCR 1 cut(s) 255
EagI CGGCCG 1 cut(s) 255
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
EclXI CGGCCG 1 cut(s) 255
Eco24I GRGCYC 1 cut(s) 277
Eco47I GGWCC 2 cut(s) 75, 189
Eco52I CGGCCG 1 cut(s) 255
EcoO109I RGGNCCY 1 cut(s) 189
EcoT38I GRGCYC 1 cut(s) 277
FaeI CATG 1 cut(s) 166
FaiI YATR 3 cut(s) 95, 164, 223
FatI CATG 1 cut(s) 162
Fnu4HI GCNGC 5 cut(s) 5, 87, 123, 132, 255
FokI GGATG 1 cut(s) 314
FriOI GRGCYC 1 cut(s) 277
Fsp4HI GCNGC 5 cut(s) 5, 87, 123, 132, 255
FspBI CTAG 2 cut(s) 33, 285
GlaI GCGC 1 cut(s) 90
GluI GCNGC 5 cut(s) 5, 87, 123, 132, 255
GsaI CCCAGC 1 cut(s) 42
GsuI CTGGAG 1 cut(s) 312
HaeIII GGCC 1 cut(s) 257
HapII CCGG 1 cut(s) 258
HhaI GCGC 1 cut(s) 91
Hin1II CATG 1 cut(s) 166
Hin6I GCGC 1 cut(s) 89
HinP1I GCGC 1 cut(s) 89
HinfI GANTC 1 cut(s) 139
HpaII CCGG 1 cut(s) 258
Hpy188I TCNGA 3 cut(s) 53, 138, 301
Hpy188III TCNNGA 2 cut(s) 67, 291
Hpy99I CGWCG 2 cut(s) 253, 282
HpyCH4V TGCA 2 cut(s) 97, 205
HpyF10VI GCNNNNNNNGC 5 cut(s) 128, 131, 211, 267, 281
Hsp92II CATG 1 cut(s) 166
HspAI GCGC 1 cut(s) 89
KroI GCCGGC 1 cut(s) 257
KroNI GCCGGC 1 cut(s) 259
Kzo9I GATC 2 cut(s) 99, 287
LpnPI CCDG 7 cut(s) 37, 52, 72, 181, 256, 271, 276
Lsp1109I GCAGC 2 cut(s) 73, 118
LweI GCATC 1 cut(s) 214
MaeI CTAG 2 cut(s) 33, 285
MalI GATC 2 cut(s) 101, 289
MboI GATC 2 cut(s) 99, 287
MboII GAAGA 1 cut(s) 82
MflI RGATCY 2 cut(s) 99, 287
MhlI GDGCHC 1 cut(s) 277
MmeI TCCRAC 1 cut(s) 279
MnlI CCTC 5 cut(s) 20, 66, 75, 202, 219
MroNI GCCGGC 1 cut(s) 257
MslI CAYNNNNRTG 1 cut(s) 161
MspI CCGG 1 cut(s) 258
MvnI CGCG 1 cut(s) 234
MwoI GCNNNNNNNGC 5 cut(s) 128, 131, 211, 267, 281
NaeI GCCGGC 1 cut(s) 259
NdeII GATC 2 cut(s) 99, 287
NgoMIV GCCGGC 1 cut(s) 257
NlaIII CATG 1 cut(s) 166
PdiI GCCGGC 1 cut(s) 259
PfeI GAWTC 1 cut(s) 139
Pfl23II CGTACG 1 cut(s) 145
PkrI GCNGC 5 cut(s) 6, 88, 124, 133, 256
PpuMI RGGWCCY 1 cut(s) 189
Psp5II RGGWCCY 1 cut(s) 189
PspFI CCCAGC 1 cut(s) 38
PspLI CGTACG 1 cut(s) 145
PspPI GGNCC 2 cut(s) 75, 189
PspPPI RGGWCCY 1 cut(s) 189
PsuI RGATCY 2 cut(s) 99, 287
RsaI GTAC 1 cut(s) 147
RsaNI GTAC 1 cut(s) 146
RseI CAYNNNNRTG 1 cut(s) 161
SatI GCNGC 5 cut(s) 5, 87, 123, 132, 255
Sau3AI GATC 2 cut(s) 99, 287
Sau96I GGNCC 2 cut(s) 75, 189
SduI GDGCHC 1 cut(s) 277
SetI ASST 6 cut(s) 44, 77, 133, 191, 230, 286
SfaNI GCATC 1 cut(s) 214
SinI GGWCC 2 cut(s) 75, 189
SmiMI CAYNNNNRTG 1 cut(s) 161
SsiI CCGC 5 cut(s) 4, 123, 234, 245, 254
SspMI CTAG 2 cut(s) 33, 285
TaqI TCGA 2 cut(s) 66, 277
TauI GCSGC 3 cut(s) 7, 125, 257
TfiI GAWTC 1 cut(s) 139
TseI GCWGC 2 cut(s) 86, 131
VpaK11BI GGWCC 2 cut(s) 75, 189
XspI CTAG 2 cut(s) 33, 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.