Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000112.1

Orthogroup ID

OG0025451

Physical Location & Seq

Genomic Coordinates Reverse (-)

93656 .. 94676

Gene Structure 1021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

atggcggactcgtcagggacgaccctgatggatctgataacggcggacccttccacctcctcaacgacaaagcctgctgtcgagaagaggtctaagagggctgcacttatgcagatccaaaacgacaccatctctgccgccaaagctgctctgaatcccatacgcaccaacatcatcatgccccataagcacaagcacaagcagaaaaagcctgttttgtatgctcaacttgcaaggagcattcacgaattagctgctacctccgatcatgtaccatcttctacaaatctccttacttgcttcttctctaatgcaacttgtgcttatttcttattcatctttgtcaatagaaaagttcccagaagcagttggtcgagtaatgagggaggtgtaatggaaagggatttggggttgttcgtatgggttagaatagagtcaaggtcactatgggaaattggctgccatgtgggccccactttgctgagttggaaatgccatgtcagcaggttaaaggctaaatttgacggaatgatgacggatgaacctattaaacgagaaatactagtgtggaggtgtttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SH3_1 SH3_9

Protein Analysis

193

Amino Acids

21.72

Weight (kDa)

9.64

Isoelectric Point (pI)

55.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025451)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_ssc0000112.1_g000018
rosa_roxburghii	Rroxscaffold_6G00421620
rosa_samantha	Rh6BG375500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	495
AciI	CCGC	3 cut(s)	5, 44, 138
AclWI	GGATC	2 cut(s)	39, 109
AcsI	RAATTY	1 cut(s)	518
AfaI	GTAC	1 cut(s)	273
AhlI	ACTAGT	1 cut(s)	562
AluBI	AGCT	2 cut(s)	146, 254
AluI	AGCT	2 cut(s)	146, 254
AlwI	GGATC	2 cut(s)	39, 109
AoxI	GGCC	1 cut(s)	469
ApaI	GGGCCC	1 cut(s)	473
ApeKI	GCWGC	4 cut(s)	101, 146, 254, 459
ApoI	RAATTY	1 cut(s)	518
AspS9I	GGNCC	3 cut(s)	46, 469, 470
AvaII	GGWCC	1 cut(s)	46
BaeGI	GKGCMC	1 cut(s)	473
BanII	GRGCYC	1 cut(s)	473
BbvI	GCAGC	4 cut(s)	88, 133, 241, 446
BccI	CCATC	3 cut(s)	22, 137, 283
BceAI	ACGGC	1 cut(s)	57
BcgI	CGANNNNNNTGC	2 cut(s)	236, 270
BcuI	ACTAGT	1 cut(s)	562
BfaI	CTAG	1 cut(s)	563
BfuAI	ACCTGC	1 cut(s)	495
BglI	GCCNNNNNGGC	1 cut(s)	468
BisI	GCNGC	5 cut(s)	102, 138, 147, 255, 460
BlsI	GCNGC	5 cut(s)	103, 139, 148, 256, 461
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	3 cut(s)	46, 469, 470
BmiI	GGNNCC	3 cut(s)	48, 471, 472
BseGI	GGATG	1 cut(s)	544
BseMII	CTCAG	1 cut(s)	473
BseRI	GAGGAG	1 cut(s)	49
BseSI	GKGCMC	1 cut(s)	473
BseXI	GCAGC	4 cut(s)	88, 133, 241, 446
BsgI	GTGCAG	1 cut(s)	87
BshFI	GGCC	1 cut(s)	471
BslFI	GGGAC	1 cut(s)	31
BsmFI	GGGAC	1 cut(s)	31
BsmI	GAATGC	1 cut(s)	240
BsnI	GGCC	1 cut(s)	471
Bsp120I	GGGCCC	1 cut(s)	469
Bsp1286I	GDGCHC	1 cut(s)	473
Bsp143I	GATC	3 cut(s)	31, 114, 265
BspACI	CCGC	3 cut(s)	5, 44, 138
BspANI	GGCC	1 cut(s)	471
BspCNI	CTCAG	1 cut(s)	474
BspLI	GGNNCC	3 cut(s)	48, 471, 472
BspMI	ACCTGC	1 cut(s)	495
BspPI	GGATC	2 cut(s)	39, 109
BssMI	GATC	3 cut(s)	31, 114, 265
Bst6I	CTCTTC	1 cut(s)	80
BstAPI	GCANNNNNTGC	1 cut(s)	320
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	2 cut(s)	93, 482
BstF5I	GGATG	1 cut(s)	544
BstKTI	GATC	3 cut(s)	34, 117, 268
BstMBI	GATC	3 cut(s)	31, 114, 265
BstMWI	GCNNNNNNNGC	8 cut(s)	143, 146, 187, 208, 230, 320, 468, 501
BstSLI	GKGCMC	1 cut(s)	473
BstV1I	GCAGC	4 cut(s)	88, 133, 241, 446
BstX2I	RGATCY	2 cut(s)	31, 114
BstYI	RGATCY	2 cut(s)	31, 114
BsuRI	GGCC	1 cut(s)	471
BtsCI	GGATG	1 cut(s)	544
BveI	ACCTGC	1 cut(s)	495
Cac8I	GCNNGC	1 cut(s)	75
Cfr13I	GGNCC	3 cut(s)	46, 469, 470
Csp6I	GTAC	1 cut(s)	272
CviAII	CATG	4 cut(s)	178, 269, 464, 497
CviJI	RGCY	8 cut(s)	73, 101, 146, 211, 254, 459, 471, 515
CviKI_1	RGCY	8 cut(s)	73, 101, 146, 211, 254, 459, 471, 515
CviQI	GTAC	1 cut(s)	272
DdeI	CTNAG	2 cut(s)	93, 482
DpnI	GATC	3 cut(s)	33, 116, 267
DpnII	GATC	3 cut(s)	31, 114, 265
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
EciI	GGCGGA	2 cut(s)	20, 59
Eco24I	GRGCYC	1 cut(s)	473
Eco47I	GGWCC	1 cut(s)	46
EcoO109I	RGGNCCY	1 cut(s)	470
EcoT38I	GRGCYC	1 cut(s)	473
FaeI	CATG	4 cut(s)	181, 272, 467, 500
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	4 cut(s)	177, 268, 463, 496
Fnu4HI	GCNGC	5 cut(s)	102, 138, 147, 255, 460
FokI	GGATG	1 cut(s)	551
FriOI	GRGCYC	1 cut(s)	473
Fsp4HI	GCNGC	5 cut(s)	102, 138, 147, 255, 460
FspBI	CTAG	1 cut(s)	563
GluI	GCNGC	5 cut(s)	102, 138, 147, 255, 460
HaeIII	GGCC	1 cut(s)	471
Hin1II	CATG	4 cut(s)	181, 272, 467, 500
HinfI	GANTC	3 cut(s)	8, 154, 434
Hpy188I	TCNGA	3 cut(s)	36, 153, 265
Hpy188III	TCNNGA	2 cut(s)	82, 245
HpyAV	CCTTC	1 cut(s)	60
HpyCH4V	TGCA	4 cut(s)	104, 112, 233, 314
HpyF10VI	GCNNNNNNNGC	8 cut(s)	143, 146, 187, 208, 230, 320, 468, 501
HpyF3I	CTNAG	2 cut(s)	93, 482
Hsp92II	CATG	4 cut(s)	181, 272, 467, 500
Kzo9I	GATC	3 cut(s)	31, 114, 265
LmnI	GCTCC	1 cut(s)	237
LpnPI	CCDG	5 cut(s)	38, 87, 225, 373, 490
Lsp1109I	GCAGC	4 cut(s)	88, 133, 241, 446
MaeI	CTAG	1 cut(s)	563
MaeIII	GTNAC	1 cut(s)	441
MalI	GATC	3 cut(s)	33, 116, 267
MboI	GATC	3 cut(s)	31, 114, 265
MboII	GAAGA	3 cut(s)	97, 270, 295
MflI	RGATCY	2 cut(s)	31, 114
MhlI	GDGCHC	1 cut(s)	473
MluCI	AATT	3 cut(s)	248, 453, 518
MlyI	GAGTC	2 cut(s)	2, 443
MmeI	TCCRAC	1 cut(s)	467
MnlI	CCTC	8 cut(s)	67, 70, 81, 90, 271, 376, 380, 564
MseI	TTAA	2 cut(s)	509, 549
MslI	CAYNNNNRTG	1 cut(s)	176
Mva1269I	GAATGC	1 cut(s)	240
MwoI	GCNNNNNNNGC	8 cut(s)	143, 146, 187, 208, 230, 320, 468, 501
NdeII	GATC	3 cut(s)	31, 114, 265
NlaIII	CATG	4 cut(s)	181, 272, 467, 500
NlaIV	GGNNCC	3 cut(s)	48, 471, 472
NmuCI	GTSAC	1 cut(s)	441
PcsI	WCGNNNNNNNCGW	1 cut(s)	17
PctI	GAATGC	1 cut(s)	240
PfeI	GAWTC	1 cut(s)	154
PkrI	GCNGC	5 cut(s)	103, 139, 148, 256, 461
PleI	GAGTC	2 cut(s)	2, 442
PpsI	GAGTC	2 cut(s)	2, 442
PspN4I	GGNNCC	3 cut(s)	48, 471, 472
PspOMI	GGGCCC	1 cut(s)	469
PspPI	GGNCC	3 cut(s)	46, 469, 470
PsuI	RGATCY	2 cut(s)	31, 114
RsaI	GTAC	1 cut(s)	273
RsaNI	GTAC	1 cut(s)	272
RseI	CAYNNNNRTG	1 cut(s)	176
SaqAI	TTAA	2 cut(s)	509, 549
SatI	GCNGC	5 cut(s)	102, 138, 147, 255, 460
Sau3AI	GATC	3 cut(s)	31, 114, 265
Sau96I	GGNCC	3 cut(s)	46, 469, 470
SchI	GAGTC	2 cut(s)	2, 443
SduI	GDGCHC	1 cut(s)	473
SinI	GGWCC	1 cut(s)	46
SmiMI	CAYNNNNRTG	1 cut(s)	176
SpeI	ACTAGT	1 cut(s)	562
Sse9I	AATT	3 cut(s)	248, 453, 518
SsiI	CCGC	3 cut(s)	5, 44, 138
SspMI	CTAG	1 cut(s)	563
TaqI	TCGA	2 cut(s)	81, 374
TasI	AATT	3 cut(s)	248, 453, 518
TauI	GCSGC	1 cut(s)	140
TfiI	GAWTC	1 cut(s)	154
Tru1I	TTAA	2 cut(s)	509, 549
Tru9I	TTAA	2 cut(s)	509, 549
TseFI	GTSAC	1 cut(s)	441
TseI	GCWGC	4 cut(s)	101, 146, 254, 459
Tsp45I	GTSAC	1 cut(s)	441
TspDTI	ATGAA	2 cut(s)	325, 555
TspGWI	ACGGA	2 cut(s)	540, 551
VpaK11BI	GGWCC	1 cut(s)	46
XapI	RAATTY	1 cut(s)	518
XspI	CTAG	1 cut(s)	563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.