Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000114.1

Orthogroup ID

OG0024872

Physical Location & Seq

Genomic Coordinates Reverse (-)

209257 .. 210888

Gene Structure 1632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atgtcgaaagaagtgaccgaagaaggagaggtgttctctaatggtcagcaacctagggactacagcgaaccggcactggcaccgctctttgatgccggagagctcagcctctggtctgtttacagagctgtgattgttgagtccatggccagccttctactcgagctcctcctaaactcgagctcctcttcctcctcctcaccatcacaatcctccctcttccattctcaggcggaatctgaagcgccgagatcccgacctcgatctaaaattgaagtaacagctctgaatcctgagctcggcctcgatctgagattggcagagttgaagaaattaaagaggaatggttctttcctctcaagccccaccgaagtcggggttggagccctaaacccgaacacagcaacccagctgcactcaactgcgccgtttctgactctctccatgactccgtgtctccgtctccgccgtttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

158

Amino Acids

17.19

Weight (kDa)

5.73

Isoelectric Point (pI)

67.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024872)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0130761
rosa_multiflora	Rmu_co8416761.1_g000001 Rmu_ssc0000114.1_g000037

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	79
AccBSI	CCGCTC	1 cut(s)	85
AciI	CCGC	3 cut(s)	83, 233, 466
AclWI	GGATC	1 cut(s)	246
AcoI	YGGCCR	1 cut(s)	147
AcuI	CTGAAG	1 cut(s)	261
AfiI	CCNNNNNNNGG	3 cut(s)	229, 299, 375
AgsI	TTSAA	2 cut(s)	275, 328
AhdI	GACNNNNNGTC	1 cut(s)	453
AjuI	GAANNNNNNNTTGG	2 cut(s)	363, 395
AluBI	AGCT	7 cut(s)	103, 128, 166, 183, 284, 298, 412
AluI	AGCT	7 cut(s)	103, 128, 166, 183, 284, 298, 412
Alw21I	GWGCWC	4 cut(s)	105, 168, 185, 300
Alw26I	GTCTC	2 cut(s)	461, 467
AlwI	GGATC	1 cut(s)	246
AlwNI	CAGNNNCTG	1 cut(s)	111
Ama87I	CYCGRG	2 cut(s)	161, 178
AoxI	GGCC	2 cut(s)	147, 301
ApeKI	GCWGC	1 cut(s)	412
AspA2I	CCTAGG	1 cut(s)	53
AspLEI	GCGC	2 cut(s)	247, 427
AsuHPI	GGTGA	1 cut(s)	192
AvaI	CYCGRG	2 cut(s)	161, 178
AvrII	CCTAGG	1 cut(s)	53
BalI	TGGCCA	1 cut(s)	149
BanI	GGYRCC	1 cut(s)	79
BanII	GRGCYC	5 cut(s)	105, 168, 185, 300, 388
Bbv12I	GWGCWC	4 cut(s)	105, 168, 185, 300
BbvI	GCAGC	1 cut(s)	399
BccI	CCATC	1 cut(s)	211
BceAI	ACGGC	2 cut(s)	412, 453
BcoDI	GTCTC	2 cut(s)	461, 467
BfaI	CTAG	1 cut(s)	54
BfmI	CTRYAG	1 cut(s)	61
BfoI	RGCGCY	1 cut(s)	248
BisI	GCNGC	1 cut(s)	413
BlnI	CCTAGG	1 cut(s)	53
BlpI	GCTNAGC	1 cut(s)	104
BlsI	GCNGC	1 cut(s)	414
BmeRI	GACNNNNNGTC	1 cut(s)	453
BmeT110I	CYCGRG	2 cut(s)	161, 178
BmiI	GGNNCC	2 cut(s)	81, 385
BmsI	GCATC	1 cut(s)	82
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
Bpu10I	CCTNAGC	1 cut(s)	294
Bpu1102I	GCTNAGC	1 cut(s)	104
BpuEI	CTTGAG	1 cut(s)	343
BsaJI	CCNNGG	2 cut(s)	53, 144
BsaXI	ACNNNNNCTCC	4 cut(s)	150, 167, 180, 197
Bsc4I	CCNNNNNNNGG	3 cut(s)	229, 299, 375
Bse118I	RCCGGY	1 cut(s)	70
Bse1I	ACTGG	1 cut(s)	81
BseDI	CCNNGG	2 cut(s)	53, 144
BseLI	CCNNNNNNNGG	3 cut(s)	229, 299, 375
BseMII	CTCAG	4 cut(s)	118, 242, 285, 302
BseNI	ACTGG	1 cut(s)	81
BseRI	GAGGAG	4 cut(s)	158, 175, 184, 187
BseXI	GCAGC	1 cut(s)	399
BseYI	CCCAGC	1 cut(s)	408
BsgI	GTGCAG	1 cut(s)	398
BshFI	GGCC	2 cut(s)	149, 303
BshNI	GGYRCC	1 cut(s)	79
BsiHKAI	GWGCWC	4 cut(s)	105, 168, 185, 300
BsiHKCI	CYCGRG	2 cut(s)	161, 178
BsiSI	CCGG	2 cut(s)	71, 96
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	3 cut(s)	229, 299, 375
BsmAI	GTCTC	2 cut(s)	461, 467
BsmBI	CGTCTC	1 cut(s)	467
BsmFI	GGGAC	1 cut(s)	71
BsnI	GGCC	2 cut(s)	149, 303
BsoBI	CYCGRG	2 cut(s)	161, 178
Bsp1286I	GDGCHC	5 cut(s)	105, 168, 185, 300, 388
Bsp143I	GATC	3 cut(s)	251, 263, 307
Bsp1720I	GCTNAGC	1 cut(s)	104
Bsp19I	CCATGG	1 cut(s)	144
BspACI	CCGC	3 cut(s)	83, 233, 466
BspANI	GGCC	2 cut(s)	149, 303
BspCNI	CTCAG	4 cut(s)	117, 241, 286, 303
BspLI	GGNNCC	2 cut(s)	81, 385
BspPI	GGATC	1 cut(s)	246
BspT107I	GGYRCC	1 cut(s)	79
BsrBI	CCGCTC	1 cut(s)	85
BsrFI	RCCGGY	1 cut(s)	70
BsrI	ACTGG	1 cut(s)	81
BssAI	RCCGGY	1 cut(s)	70
BssECI	CCNNGG	2 cut(s)	53, 144
BssMI	GATC	3 cut(s)	251, 263, 307
BssT1I	CCWWGG	2 cut(s)	53, 144
Bst6I	CTCTTC	2 cut(s)	193, 224
BstC8I	GCNNGC	1 cut(s)	151
BstDEI	CTNAG	4 cut(s)	104, 228, 294, 311
BstDSI	CCRYGG	1 cut(s)	144
BstH2I	RGCGCY	1 cut(s)	248
BstHHI	GCGC	2 cut(s)	247, 427
BstKTI	GATC	3 cut(s)	254, 266, 310
BstMAI	GTCTC	2 cut(s)	461, 467
BstMBI	GATC	3 cut(s)	251, 263, 307
BstSFI	CTRYAG	1 cut(s)	61
BstV1I	GCAGC	1 cut(s)	399
BstX2I	RGATCY	1 cut(s)	251
BstYI	RGATCY	1 cut(s)	251
BsuRI	GGCC	2 cut(s)	149, 303
BtgI	CCRYGG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	74
Cac8I	GCNNGC	1 cut(s)	151
CaiI	CAGNNNCTG	1 cut(s)	111
CfoI	GCGC	2 cut(s)	247, 427
Cfr10I	RCCGGY	1 cut(s)	70
CviAII	CATG	2 cut(s)	145, 445
DdeI	CTNAG	4 cut(s)	104, 228, 294, 311
DpnI	GATC	3 cut(s)	253, 265, 309
DpnII	GATC	3 cut(s)	251, 263, 307
DriI	GACNNNNNGTC	1 cut(s)	453
EaeI	YGGCCR	1 cut(s)	147
Eam1104I	CTCTTC	2 cut(s)	193, 224
Eam1105I	GACNNNNNGTC	1 cut(s)	453
EarI	CTCTTC	2 cut(s)	193, 224
EciI	GGCGGA	2 cut(s)	248, 455
Ecl136II	GAGCTC	4 cut(s)	103, 166, 183, 298
Eco130I	CCWWGG	2 cut(s)	53, 144
Eco24I	GRGCYC	5 cut(s)	105, 168, 185, 300, 388
Eco53kI	GAGCTC	4 cut(s)	103, 166, 183, 298
Eco57I	CTGAAG	1 cut(s)	261
Eco88I	CYCGRG	2 cut(s)	161, 178
EcoICRI	GAGCTC	4 cut(s)	103, 166, 183, 298
EcoT14I	CCWWGG	2 cut(s)	53, 144
EcoT38I	GRGCYC	5 cut(s)	105, 168, 185, 300, 388
ErhI	CCWWGG	2 cut(s)	53, 144
Esp3I	CGTCTC	1 cut(s)	467
FaeI	CATG	2 cut(s)	148, 448
FaiI	YATR	2 cut(s)	146, 446
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	2 cut(s)	144, 444
Fnu4HI	GCNGC	1 cut(s)	413
FriOI	GRGCYC	5 cut(s)	105, 168, 185, 300, 388
Fsp4HI	GCNGC	1 cut(s)	413
FspBI	CTAG	1 cut(s)	54
GlaI	GCGC	2 cut(s)	246, 426
GluI	GCNGC	1 cut(s)	413
GsaI	CCCAGC	1 cut(s)	412
HaeII	RGCGCY	1 cut(s)	248
HaeIII	GGCC	2 cut(s)	149, 303
HapII	CCGG	2 cut(s)	71, 96
HhaI	GCGC	2 cut(s)	247, 427
Hin1II	CATG	2 cut(s)	148, 448
Hin6I	GCGC	2 cut(s)	245, 425
HinP1I	GCGC	2 cut(s)	245, 425
HinfI	GANTC	5 cut(s)	140, 236, 289, 436, 448
HpaII	CCGG	2 cut(s)	71, 96
HphI	GGTGA	1 cut(s)	192
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	5 cut(s)	241, 288, 312, 435, 476
Hpy188III	TCNNGA	2 cut(s)	255, 293
Hpy8I	GTNNAC	1 cut(s)	121
HpyAV	CCTTC	2 cut(s)	17, 164
HpyCH4V	TGCA	1 cut(s)	415
HpyF3I	CTNAG	4 cut(s)	104, 228, 294, 311
Hsp92II	CATG	2 cut(s)	148, 448
HspAI	GCGC	2 cut(s)	245, 425
Kzo9I	GATC	3 cut(s)	251, 263, 307
LmnI	GCTCC	3 cut(s)	171, 188, 383
LpnPI	CCDG	8 cut(s)	62, 84, 97, 109, 163, 215, 306, 422
Lsp1109I	GCAGC	1 cut(s)	399
LweI	GCATC	1 cut(s)	82
MaeI	CTAG	1 cut(s)	54
MaeIII	GTNAC	2 cut(s)	13, 277
MalI	GATC	3 cut(s)	253, 265, 309
MbiI	CCGCTC	1 cut(s)	85
MboI	GATC	3 cut(s)	251, 263, 307
MboII	GAAGA	4 cut(s)	32, 180, 211, 340
MflI	RGATCY	1 cut(s)	251
MhlI	GDGCHC	5 cut(s)	105, 168, 185, 300, 388
MlsI	TGGCCA	1 cut(s)	149
MluCI	AATT	2 cut(s)	270, 332
MluNI	TGGCCA	1 cut(s)	149
MlyI	GAGTC	3 cut(s)	149, 430, 442
MmeI	TCCRAC	1 cut(s)	361
Mox20I	TGGCCA	1 cut(s)	149
MscI	TGGCCA	1 cut(s)	149
MseI	TTAA	1 cut(s)	335
Msp20I	TGGCCA	1 cut(s)	149
MspA1I	CMGCKG	1 cut(s)	412
MspI	CCGG	2 cut(s)	71, 96
NcoI	CCATGG	1 cut(s)	144
NdeII	GATC	3 cut(s)	251, 263, 307
NlaIII	CATG	2 cut(s)	148, 448
NlaIV	GGNNCC	2 cut(s)	81, 385
NmeAIII	GCCGAG	2 cut(s)	273, 279
NmuCI	GTSAC	1 cut(s)	13
PaeR7I	CTCGAG	2 cut(s)	161, 178
PfeI	GAWTC	2 cut(s)	236, 289
PkrI	GCNGC	1 cut(s)	414
PleI	GAGTC	3 cut(s)	148, 430, 442
PpsI	GAGTC	3 cut(s)	148, 430, 442
Psp124BI	GAGCTC	4 cut(s)	105, 168, 185, 300
PspFI	CCCAGC	1 cut(s)	408
PspN4I	GGNNCC	2 cut(s)	81, 385
PspXI	VCTCGAGB	2 cut(s)	161, 178
PstNI	CAGNNNCTG	1 cut(s)	111
PsuI	RGATCY	1 cut(s)	251
PvuII	CAGCTG	1 cut(s)	412
SacI	GAGCTC	4 cut(s)	105, 168, 185, 300
SaqAI	TTAA	1 cut(s)	335
SatI	GCNGC	1 cut(s)	413
Sau3AI	GATC	3 cut(s)	251, 263, 307
SchI	GAGTC	3 cut(s)	149, 430, 442
SduI	GDGCHC	5 cut(s)	105, 168, 185, 300, 388
SfaNI	GCATC	1 cut(s)	82
SfcI	CTRYAG	1 cut(s)	61
Sfr274I	CTCGAG	2 cut(s)	161, 178
SlaI	CTCGAG	2 cut(s)	161, 178
SmlI	CTYRAG	3 cut(s)	161, 178, 358
SmoI	CTYRAG	3 cut(s)	161, 178, 358
Sse9I	AATT	2 cut(s)	270, 332
SsiI	CCGC	3 cut(s)	83, 233, 466
SspMI	CTAG	1 cut(s)	54
SstI	GAGCTC	4 cut(s)	105, 168, 185, 300
StyI	CCWWGG	2 cut(s)	53, 144
TaqI	TCGA	5 cut(s)	5, 162, 179, 262, 306
TaqII	GACCGA	1 cut(s)	32
TasI	AATT	2 cut(s)	270, 332
TfiI	GAWTC	2 cut(s)	236, 289
Tru1I	TTAA	1 cut(s)	335
Tru9I	TTAA	1 cut(s)	335
TscAI	CASTG	1 cut(s)	81
TseFI	GTSAC	1 cut(s)	13
TseI	GCWGC	1 cut(s)	412
Tsp45I	GTSAC	1 cut(s)	13
TspGWI	ACGGA	2 cut(s)	441, 449
TspRI	CASTG	1 cut(s)	81
XhoI	CTCGAG	2 cut(s)	161, 178
XmaJI	CCTAGG	1 cut(s)	53
XspI	CTAG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.