Rmu_ssc0000125.1_g000025

aminoacylase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000125.1
OG0028917
Physical Location & Seq
Reverse (-)
92911 .. 93480
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000125.1_g000025.1.cds

Sequence Viewer

Length: 390 bp
atgtggtccgaatttgccataaatgtgtccggtgaatgggatggttatggagcagacttcacaaccgaagggaacccgattgaactcccaaaaagggttgtgcctgatgcttacagggagtgggaggttaaggttttcgactggcagactcaatgtcccactcttgctgacctagaagaccaagttcttgcctacaagacgataaagctacttcccacagttggatgtgaagccgatgctgctacacggaatcccagtcaacgcaggaatcctgatgaggctaggaaacctgaaggcattaggagaccacatggcttgaagatgacgcgggagatattttgggagattaaatctgatttttgcatgcgaaaatcaaggagattactttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

15.02

Weight (kDa)

5.91

Isoelectric Point (pI)

37.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028917)

Species Orthologous Gene IDs
malus_domestica MD11G1100600.v1.1
rosa_multiflora Rmu_ssc0000125.1_g000025

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 328
AciI CCGC 1 cut(s) 328
AcsI RAATTY 1 cut(s) 11
AcuI CTGAAG 1 cut(s) 312
AfiI CCNNNNNNNGG 3 cut(s) 36, 94, 221
AgsI TTSAA 2 cut(s) 83, 319
AhdI GACNNNNNGTC 1 cut(s) 153
AluBI AGCT 1 cut(s) 208
AluI AGCT 1 cut(s) 208
Alw26I GTCTC 1 cut(s) 298
ApeKI GCWGC 1 cut(s) 239
ApoI RAATTY 1 cut(s) 11
AspS9I GGNCC 1 cut(s) 6
AsuHPI GGTGA 1 cut(s) 44
AvaII GGWCC 1 cut(s) 6
BbsI GAAGAC 1 cut(s) 183
BbvI GCAGC 1 cut(s) 226
BccI CCATC 1 cut(s) 35
BcoDI GTCTC 1 cut(s) 298
BfaI CTAG 2 cut(s) 173, 282
BisI GCNGC 1 cut(s) 240
BlsI GCNGC 1 cut(s) 241
Bme18I GGWCC 1 cut(s) 6
BmeRI GACNNNNNGTC 1 cut(s) 153
BmgT120I GGNCC 1 cut(s) 6
BmiI GGNNCC 1 cut(s) 74
BmrI ACTGGG 1 cut(s) 249
BmsI GCATC 2 cut(s) 97, 226
BmuI ACTGGG 1 cut(s) 249
BpiI GAAGAC 1 cut(s) 183
BsaI GGTCTC 1 cut(s) 298
BsaWI WCCGGW 1 cut(s) 29
Bsc4I CCNNNNNNNGG 3 cut(s) 36, 94, 221
Bse1I ACTGG 2 cut(s) 146, 255
BseGI GGATG 2 cut(s) 46, 230
BseLI CCNNNNNNNGG 3 cut(s) 36, 94, 221
BseNI ACTGG 2 cut(s) 146, 255
BseXI GCAGC 1 cut(s) 226
Bsh1236I CGCG 1 cut(s) 328
BsiSI CCGG 1 cut(s) 30
BslFI GGGAC 1 cut(s) 141
BslI CCNNNNNNNGG 3 cut(s) 36, 94, 221
BsmAI GTCTC 1 cut(s) 298
BsmFI GGGAC 1 cut(s) 141
Bso31I GGTCTC 1 cut(s) 298
BspACI CCGC 1 cut(s) 328
BspFNI CGCG 1 cut(s) 328
BspLI GGNNCC 1 cut(s) 74
BspTNI GGTCTC 1 cut(s) 298
BsrI ACTGG 2 cut(s) 146, 255
Bst4CI ACNGT 1 cut(s) 220
BstC8I GCNNGC 1 cut(s) 365
BstF5I GGATG 2 cut(s) 46, 230
BstFNI CGCG 1 cut(s) 328
BstMAI GTCTC 1 cut(s) 298
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstNSI RCATGY 1 cut(s) 367
BstUI CGCG 1 cut(s) 328
BstV1I GCAGC 1 cut(s) 226
BstV2I GAAGAC 1 cut(s) 183
BtsCI GGATG 2 cut(s) 46, 230
Cac8I GCNNGC 1 cut(s) 365
Cfr13I GGNCC 1 cut(s) 6
CseI GACGC 1 cut(s) 334
CspCI CAANNNNNGTGG 2 cut(s) 297, 332
CviAII CATG 2 cut(s) 311, 364
CviJI RGCY 4 cut(s) 208, 233, 281, 315
CviKI_1 RGCY 4 cut(s) 208, 233, 281, 315
DriI GACNNNNNGTC 1 cut(s) 153
Eam1105I GACNNNNNGTC 1 cut(s) 153
Eco31I GGTCTC 1 cut(s) 298
Eco47I GGWCC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 312
FaeI CATG 2 cut(s) 314, 367
FaiI YATR 4 cut(s) 20, 48, 312, 365
FaqI GGGAC 1 cut(s) 141
FatI CATG 2 cut(s) 310, 363
FauI CCCGC 1 cut(s) 321
Fnu4HI GCNGC 1 cut(s) 240
FokI GGATG 2 cut(s) 53, 237
Fsp4HI GCNGC 1 cut(s) 240
FspBI CTAG 2 cut(s) 173, 282
GluI GCNGC 1 cut(s) 240
HapII CCGG 1 cut(s) 30
HgaI GACGC 1 cut(s) 334
Hin1II CATG 2 cut(s) 314, 367
HincII GTYRAC 1 cut(s) 260
HindII GTYRAC 1 cut(s) 260
HinfI GANTC 3 cut(s) 148, 250, 268
HpaII CCGG 1 cut(s) 30
HphI GGTGA 1 cut(s) 44
Hpy166II GTNNAC 1 cut(s) 260
Hpy188I TCNGA 2 cut(s) 10, 355
Hpy188III TCNNGA 1 cut(s) 272
Hpy8I GTNNAC 1 cut(s) 260
HpyAV CCTTC 2 cut(s) 62, 287
HpyCH4III ACNGT 1 cut(s) 220
HpyCH4V TGCA 1 cut(s) 363
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
Hsp92II CATG 2 cut(s) 314, 367
LmnI GCTCC 1 cut(s) 50
LpnPI CCDG 8 cut(s) 43, 100, 117, 127, 250, 268, 285, 303
Lsp1109I GCAGC 1 cut(s) 226
LweI GCATC 2 cut(s) 97, 226
MaeI CTAG 2 cut(s) 173, 282
MboII GAAGA 2 cut(s) 188, 331
MluCI AATT 1 cut(s) 11
MlyI GAGTC 1 cut(s) 142
MmeI TCCRAC 1 cut(s) 202
MnlI CCTC 2 cut(s) 118, 271
MseI TTAA 2 cut(s) 129, 348
MslI CAYNNNNRTG 1 cut(s) 23
MspI CCGG 1 cut(s) 30
MvnI CGCG 1 cut(s) 328
MwoI GCNNNNNNNGC 1 cut(s) 239
NlaIII CATG 2 cut(s) 314, 367
NlaIV GGNNCC 1 cut(s) 74
NspI RCATGY 1 cut(s) 367
PaeI GCATGC 1 cut(s) 367
PfeI GAWTC 2 cut(s) 250, 268
PkrI GCNGC 1 cut(s) 241
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
PspN4I GGNNCC 1 cut(s) 74
PspPI GGNCC 1 cut(s) 6
RseI CAYNNNNRTG 1 cut(s) 23
SaqAI TTAA 2 cut(s) 129, 348
SatI GCNGC 1 cut(s) 240
Sau96I GGNCC 1 cut(s) 6
SchI GAGTC 1 cut(s) 142
SetI ASST 5 cut(s) 129, 135, 174, 210, 292
SfaNI GCATC 2 cut(s) 97, 226
SinI GGWCC 1 cut(s) 6
SmiMI CAYNNNNRTG 1 cut(s) 23
SphI GCATGC 1 cut(s) 367
Sse9I AATT 1 cut(s) 11
SsiI CCGC 1 cut(s) 328
SspMI CTAG 2 cut(s) 173, 282
TaaI ACNGT 1 cut(s) 220
TaqI TCGA 1 cut(s) 138
TasI AATT 1 cut(s) 11
TfiI GAWTC 2 cut(s) 250, 268
Tru1I TTAA 2 cut(s) 129, 348
Tru9I TTAA 2 cut(s) 129, 348
TseI GCWGC 1 cut(s) 239
TspGWI ACGGA 1 cut(s) 262
VpaK11BI GGWCC 1 cut(s) 6
XapI RAATTY 1 cut(s) 11
XceI RCATGY 1 cut(s) 367
XspI CTAG 2 cut(s) 173, 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.