Rmu_ssc0000158.1_g000004

homogentisate phytyltransferase 1, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000158.1
OG0020156
Physical Location & Seq
Forward (+)
13585 .. 21983
8399 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1086 bp
atggaaaacactttcatcaacccattgacgaattactgcaacagcttttctgttcaagatgctccatgccatgtcagatttgcctggcggctcctctccaccattttgaaggagcaccacaacaaatatgggcaacagccacatttgtattgccacgagctgaaagaactgtggaaattggagtcacaggttgctggaggcctagcttgtggaactcctcatatgatcagtgctacgattgaaggccttgcttattggcgtaagtttgatctgagtttggatcaggctcaagctagtagtggtatacttcctctgtgggtgagagctgtggcttggttgtctcgttggcgaggctttcctcatatgttgttaggtgatggtgatggtgatgctgaggatgaggatgagctcatttctttaaagccacgaaggagggcaatggttctcaatttgggtgcaattgctggtagtatgaatggcagcggcggaagcatttttactgccaatgcaaatccaaatctaaatattccaaactgtgatgatcggcaaatcacagtaaccaaaagaagaggagaccatggtcgtaaaaaacataacggggcaccattgtcctatgcctcacaatcacgatcagagaagatcgatgttaatattgatggacaacccatggatagatttcagattggcggcggcttttctaaacaatgggacgcgtttcatcgcttttgtcgtcctcatactgtaatcggcactcatccgctgctcaggtggaagagacatgcaattcttgctgctgcttgcatcctaattgtgagagctgtcgtggtccagcttgccttctttgtacacatccagggtttcggccgttctctctcctctcaaccgtcgccgcggagcagccaagccaagccaaggaagaagaagatcaagatgccttcacacaagtccttcatcatcaagaagaagcttggcaagaagacgaggcagaacaggcccatccctcactggatccgtctcaggactgacaacaaaatcaggtacaatgctaagcgcaggcactggcgccgcaccaagctcgggttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00130 ko01100 ko01110 map00130 map01100 map01110
Pfam Domains
Protein Families
UbiA

Protein Analysis

361

Amino Acids

41.1

Weight (kDa)

10.43

Isoelectric Point (pI)

58.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L39 PF00832 319 - 359 3.2e-20 Ribosomal L39 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02190
fragaria_vesca FvH4_2g40780 FvH4_2g40780
rosa_chinensis RchiOBHm_Chr6g0299801
rosa_multiflora Rmu_ssc0000158.1_g000004
rosa_rugosa Rorug06G0292400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 601, 1062
AccI GTMKAC 1 cut(s) 304
AccII CGCG 2 cut(s) 713, 892
AciI CCGC 9 cut(s) 88, 483, 486, 687, 690, 758, 890, 892, 1066
AclWI GGATC 3 cut(s) 288, 1003, 1016
AcoI YGGCCR 1 cut(s) 862
AcyI GRCGYC 1 cut(s) 1063
AfaI GTAC 2 cut(s) 846, 1040
AfiI CCNNNNNNNGG 2 cut(s) 912, 1077
AflIII ACRYGT 1 cut(s) 711
AgsI TTSAA 3 cut(s) 56, 109, 242
AjnI CCWGG 2 cut(s) 83, 852
AjuI GAANNNNNNNTTGG 1 cut(s) 1064
Alw21I GWGCWC 2 cut(s) 117, 411
Alw26I GTCTC 4 cut(s) 345, 567, 769, 1019
AlwI GGATC 3 cut(s) 288, 1003, 1016
AlwNI CAGNNNCTG 1 cut(s) 1059
Ama87I CYCGRG 1 cut(s) 1076
AoxI GGCC 4 cut(s) 199, 244, 862, 992
ApeKI GCWGC 5 cut(s) 480, 760, 791, 794, 897
AspLEI GCGC 2 cut(s) 1053, 1065
AspS9I GGNCC 2 cut(s) 826, 993
AsuHPI GGTGA 4 cut(s) 331, 386, 392, 398
AvaI CYCGRG 1 cut(s) 1076
AvaII GGWCC 1 cut(s) 826
BaeGI GKGCMC 1 cut(s) 604
BamHI GGATCC 1 cut(s) 1008
BanI GGYRCC 2 cut(s) 601, 1062
BanII GRGCYC 1 cut(s) 411
BarI GAAGNNNNNNTAC 2 cut(s) 481, 513
BauI CACGAG 1 cut(s) 155
BbsI GAAGAC 1 cut(s) 983
Bbv12I GWGCWC 2 cut(s) 117, 411
BbvCI CCTCAGC 1 cut(s) 393
BbvI GCAGC 5 cut(s) 492, 747, 778, 781, 909
BccI CCATC 4 cut(s) 371, 377, 650, 1004
BceAI ACGGC 1 cut(s) 849
BcgI CGANNNNNNTGC 1 cut(s) 1057
BciT130I CCWGG 2 cut(s) 85, 854
BclI TGATCA 1 cut(s) 225
BcoDI GTCTC 4 cut(s) 345, 567, 769, 1019
BfaI CTAG 2 cut(s) 203, 294
BfoI RGCGCY 1 cut(s) 1066
BlpI GCTNAGC 1 cut(s) 1047
Bme1390I CCNGG 2 cut(s) 85, 854
Bme18I GGWCC 1 cut(s) 826
BmeT110I CYCGRG 1 cut(s) 1076
BmgT120I GGNCC 2 cut(s) 826, 993
BmiI GGNNCC 4 cut(s) 92, 603, 1010, 1064
BmrFI CCNGG 2 cut(s) 85, 854
BmsI GCATC 4 cut(s) 49, 379, 810, 921
BoxI GACNNNNGTC 1 cut(s) 579
BpiI GAAGAC 1 cut(s) 983
BpmI CTGGAG 1 cut(s) 216
Bpu10I CCTNAGC 2 cut(s) 393, 764
Bpu1102I GCTNAGC 1 cut(s) 1047
BpuEI CTTGAG 1 cut(s) 273
Bsa29I ATCGAT 1 cut(s) 642
BsaHI GRCGYC 1 cut(s) 1063
BsaI GGTCTC 1 cut(s) 567
BsaJI CCNNGG 5 cut(s) 577, 666, 853, 890, 911
Bsc4I CCNNNNNNNGG 2 cut(s) 912, 1077
Bse1I ACTGG 2 cut(s) 1010, 1064
Bse3DI GCAATG 1 cut(s) 444
BseBI CCWGG 2 cut(s) 85, 854
BseCI ATCGAT 1 cut(s) 642
BseDI CCNNGG 5 cut(s) 577, 666, 853, 890, 911
BseGI GGATG 6 cut(s) 403, 409, 754, 801, 849, 996
BseLI CCNNNNNNNGG 2 cut(s) 912, 1077
BseMI GCAATG 1 cut(s) 444
BseMII CTCAG 4 cut(s) 263, 384, 778, 1030
BseNI ACTGG 2 cut(s) 1010, 1064
BseRI GAGGAG 4 cut(s) 83, 207, 585, 865
BseSI GKGCMC 1 cut(s) 604
BseX3I CGGCCG 1 cut(s) 862
BseXI GCAGC 5 cut(s) 492, 747, 778, 781, 909
Bsh1236I CGCG 2 cut(s) 713, 892
Bsh1285I CGRYCG 1 cut(s) 865
BshFI GGCC 4 cut(s) 201, 246, 864, 994
BshNI GGYRCC 2 cut(s) 601, 1062
BshVI ATCGAT 1 cut(s) 642
BsiEI CGRYCG 1 cut(s) 865
BsiHKAI GWGCWC 2 cut(s) 117, 411
BsiHKCI CYCGRG 1 cut(s) 1076
BslFI GGGAC 1 cut(s) 722
BslI CCNNNNNNNGG 2 cut(s) 912, 1077
BsmAI GTCTC 4 cut(s) 345, 567, 769, 1019
BsmBI CGTCTC 1 cut(s) 1019
BsmFI GGGAC 1 cut(s) 722
BsnI GGCC 4 cut(s) 201, 246, 864, 994
Bso31I GGTCTC 1 cut(s) 567
BsoBI CYCGRG 1 cut(s) 1076
Bsp1286I GDGCHC 3 cut(s) 117, 411, 604
Bsp1407I TGTACA 1 cut(s) 844
Bsp143I GATC 8 cut(s) 225, 268, 280, 541, 629, 639, 924, 1008
Bsp1720I GCTNAGC 1 cut(s) 1047
Bsp19I CCATGG 2 cut(s) 577, 666
BspACI CCGC 9 cut(s) 88, 483, 486, 687, 690, 758, 890, 892, 1066
BspANI GGCC 4 cut(s) 201, 246, 864, 994
BspCNI CTCAG 4 cut(s) 264, 385, 777, 1029
BspDI ATCGAT 1 cut(s) 642
BspFNI CGCG 2 cut(s) 713, 892
BspLI GGNNCC 4 cut(s) 92, 603, 1010, 1064
BspPI GGATC 3 cut(s) 288, 1003, 1016
BspT107I GGYRCC 2 cut(s) 601, 1062
BspTNI GGTCTC 1 cut(s) 567
BsrDI GCAATG 1 cut(s) 444
BsrGI TGTACA 1 cut(s) 844
BsrI ACTGG 2 cut(s) 1010, 1064
BssECI CCNNGG 5 cut(s) 577, 666, 853, 890, 911
BssMI GATC 8 cut(s) 225, 268, 280, 541, 629, 639, 924, 1008
BssNAI GTATAC 1 cut(s) 305
BssNI GRCGYC 1 cut(s) 1063
BssSI CACGAG 1 cut(s) 155
BssT1I CCWWGG 3 cut(s) 577, 666, 911
Bst1107I GTATAC 1 cut(s) 305
Bst2BI CACGAG 1 cut(s) 155
Bst2UI CCWGG 2 cut(s) 85, 854
Bst4CI ACNGT 5 cut(s) 171, 536, 556, 742, 885
Bst6I CTCTTC 2 cut(s) 562, 767
BstACI GRCGYC 1 cut(s) 1063
BstAPI GCANNNNNTGC 1 cut(s) 788
BstAUI TGTACA 1 cut(s) 844
BstC8I GCNNGC 3 cut(s) 799, 834, 1055
BstDEI CTNAG 5 cut(s) 272, 393, 764, 1016, 1047
BstDSI CCRYGG 3 cut(s) 577, 666, 890
BstF5I GGATG 6 cut(s) 403, 409, 754, 801, 849, 996
BstFNI CGCG 2 cut(s) 713, 892
BstH2I RGCGCY 1 cut(s) 1066
BstHHI GCGC 2 cut(s) 1053, 1065
BstKTI GATC 8 cut(s) 228, 271, 283, 544, 632, 642, 927, 1011
BstMAI GTCTC 4 cut(s) 345, 567, 769, 1019
BstMBI GATC 8 cut(s) 225, 268, 280, 541, 629, 639, 924, 1008
BstMCI CGRYCG 1 cut(s) 865
BstMWI GCNNNNNNNGC 3 cut(s) 489, 788, 991
BstNI CCWGG 2 cut(s) 85, 854
BstNSI RCATGY 1 cut(s) 782
BstPAI GACNNNNGTC 1 cut(s) 579
BstSCI CCNGG 2 cut(s) 83, 852
BstSLI GKGCMC 1 cut(s) 604
BstUI CGCG 2 cut(s) 713, 892
BstV1I GCAGC 5 cut(s) 492, 747, 778, 781, 909
BstV2I GAAGAC 1 cut(s) 983
BstX2I RGATCY 1 cut(s) 1008
BstYI RGATCY 1 cut(s) 1008
BstZ17I GTATAC 1 cut(s) 305
BstZI CGGCCG 1 cut(s) 862
Bsu15I ATCGAT 1 cut(s) 642
BsuRI GGCC 4 cut(s) 201, 246, 864, 994
BsuTUI ATCGAT 1 cut(s) 642
BtgI CCRYGG 3 cut(s) 577, 666, 890
BtgZI GCGATG 1 cut(s) 704
BtsCI GGATG 6 cut(s) 403, 409, 754, 801, 849, 996
BtsIMutI CAGTG 3 cut(s) 235, 1003, 1057
Cac8I GCNNGC 3 cut(s) 799, 834, 1055
CaiI CAGNNNCTG 1 cut(s) 1059
CfoI GCGC 2 cut(s) 1053, 1065
Cfr13I GGNCC 2 cut(s) 826, 993
Cfr42I CCGCGG 1 cut(s) 893
ClaI ATCGAT 1 cut(s) 642
CseI GACGC 1 cut(s) 719
Csp6I GTAC 2 cut(s) 845, 1039
CviAII CATG 5 cut(s) 66, 71, 578, 667, 779
CviQI GTAC 2 cut(s) 845, 1039
DdeI CTNAG 5 cut(s) 272, 393, 764, 1016, 1047
DinI GGCGCC 1 cut(s) 1064
DpnI GATC 8 cut(s) 227, 270, 282, 543, 631, 641, 926, 1010
DpnII GATC 8 cut(s) 225, 268, 280, 541, 629, 639, 924, 1008
DraI TTTAAA 1 cut(s) 420
EaeI YGGCCR 1 cut(s) 862
EagI CGGCCG 1 cut(s) 862
Eam1104I CTCTTC 2 cut(s) 562, 767
EarI CTCTTC 2 cut(s) 562, 767
EciI GGCGGA 1 cut(s) 501
Ecl136II GAGCTC 1 cut(s) 409
EclXI CGGCCG 1 cut(s) 862
Eco130I CCWWGG 3 cut(s) 577, 666, 911
Eco147I AGGCCT 2 cut(s) 201, 246
Eco24I GRGCYC 1 cut(s) 411
Eco31I GGTCTC 1 cut(s) 567
Eco47I GGWCC 1 cut(s) 826
Eco52I CGGCCG 1 cut(s) 862
Eco53kI GAGCTC 1 cut(s) 409
Eco88I CYCGRG 1 cut(s) 1076
EcoICRI GAGCTC 1 cut(s) 409
EcoRII CCWGG 2 cut(s) 83, 852
EcoT14I CCWWGG 3 cut(s) 577, 666, 911
EcoT38I GRGCYC 1 cut(s) 411
EgeI GGCGCC 1 cut(s) 1064
EheI GGCGCC 1 cut(s) 1064
ErhI CCWWGG 3 cut(s) 577, 666, 911
Esp3I CGTCTC 1 cut(s) 1019
FaeI CATG 5 cut(s) 69, 74, 581, 670, 782
FaqI GGGAC 1 cut(s) 722
FatI CATG 5 cut(s) 65, 70, 577, 666, 778
FauNDI CATATG 2 cut(s) 222, 363
FbaI TGATCA 1 cut(s) 225
FblI GTMKAC 1 cut(s) 304
FokI GGATG 6 cut(s) 410, 416, 741, 788, 836, 983
FriOI GRGCYC 1 cut(s) 411
FspBI CTAG 2 cut(s) 203, 294
GlaI GCGC 2 cut(s) 1052, 1064
GsuI CTGGAG 1 cut(s) 216
HaeII RGCGCY 1 cut(s) 1066
HaeIII GGCC 4 cut(s) 201, 246, 864, 994
HgaI GACGC 1 cut(s) 719
HhaI GCGC 2 cut(s) 1053, 1065
Hin1I GRCGYC 1 cut(s) 1063
Hin1II CATG 5 cut(s) 69, 74, 581, 670, 782
Hin6I GCGC 2 cut(s) 1051, 1063
HinP1I GCGC 2 cut(s) 1051, 1063
HindIII AAGCTT 1 cut(s) 965
HinfI GANTC 1 cut(s) 182
HphI GGTGA 4 cut(s) 331, 386, 392, 398
Hpy166II GTNNAC 2 cut(s) 305, 847
Hpy188I TCNGA 5 cut(s) 77, 273, 634, 681, 1085
Hpy188III TCNNGA 5 cut(s) 56, 627, 928, 958, 1018
Hpy8I GTNNAC 2 cut(s) 305, 847
Hpy99I CGWCG 1 cut(s) 889
HpyAV CCTTC 6 cut(s) 103, 236, 423, 847, 945, 958
HpyCH4III ACNGT 5 cut(s) 171, 536, 556, 742, 885
HpyCH4V TGCA 5 cut(s) 39, 458, 509, 782, 801
HpyF10VI GCNNNNNNNGC 3 cut(s) 489, 788, 991
HpyF3I CTNAG 5 cut(s) 272, 393, 764, 1016, 1047
Hsp92I GRCGYC 1 cut(s) 1063
Hsp92II CATG 5 cut(s) 69, 74, 581, 670, 782
HspAI GCGC 2 cut(s) 1051, 1063
KasI GGCGCC 1 cut(s) 1062
Ksp22I TGATCA 1 cut(s) 225
KspI CCGCGG 1 cut(s) 893
Kzo9I GATC 8 cut(s) 225, 268, 280, 541, 629, 639, 924, 1008
LmnI GCTCC 4 cut(s) 67, 96, 112, 894
Lsp1109I GCAGC 5 cut(s) 492, 747, 778, 781, 909
LweI GCATC 4 cut(s) 49, 379, 810, 921
MaeI CTAG 2 cut(s) 203, 294
MaeIII GTNAC 2 cut(s) 183, 556
MalI GATC 8 cut(s) 227, 270, 282, 543, 631, 641, 926, 1010
MboI GATC 8 cut(s) 225, 268, 280, 541, 629, 639, 924, 1008
MboII GAAGA 8 cut(s) 579, 649, 784, 928, 931, 934, 973, 988
MfeI CAATTG 1 cut(s) 459
MflI RGATCY 1 cut(s) 1008
MhlI GDGCHC 3 cut(s) 117, 411, 604
MluCI AATT 6 cut(s) 31, 176, 448, 459, 783, 807
MluI ACGCGT 1 cut(s) 711
Mly113I GGCGCC 1 cut(s) 1063
MlyI GAGTC 1 cut(s) 191
MseI TTAA 2 cut(s) 419, 648
MspA1I CMGCKG 3 cut(s) 483, 760, 892
MspR9I CCNGG 2 cut(s) 85, 854
MunI CAATTG 1 cut(s) 459
MvaI CCWGG 2 cut(s) 85, 854
MvnI CGCG 2 cut(s) 713, 892
MwoI GCNNNNNNNGC 3 cut(s) 489, 788, 991
NarI GGCGCC 1 cut(s) 1063
NcoI CCATGG 2 cut(s) 577, 666
NdeI CATATG 2 cut(s) 222, 363
NdeII GATC 8 cut(s) 225, 268, 280, 541, 629, 639, 924, 1008
NlaIII CATG 5 cut(s) 69, 74, 581, 670, 782
NlaIV GGNNCC 4 cut(s) 92, 603, 1010, 1064
NmuCI GTSAC 1 cut(s) 183
NspI RCATGY 1 cut(s) 782
PceI AGGCCT 2 cut(s) 201, 246
PcsI WCGNNNNNNNCGW 1 cut(s) 727
PleI GAGTC 1 cut(s) 190
PluTI GGCGCC 1 cut(s) 1066
PpsI GAGTC 1 cut(s) 190
PshAI GACNNNNGTC 1 cut(s) 579
Psp124BI GAGCTC 1 cut(s) 411
Psp6I CCWGG 2 cut(s) 83, 852
PspGI CCWGG 2 cut(s) 83, 852
PspN4I GGNNCC 4 cut(s) 92, 603, 1010, 1064
PspPI GGNCC 2 cut(s) 826, 993
PstNI CAGNNNCTG 1 cut(s) 1059
PsuI RGATCY 1 cut(s) 1008
RsaI GTAC 2 cut(s) 846, 1040
RsaNI GTAC 2 cut(s) 845, 1039
SacI GAGCTC 1 cut(s) 411
SacII CCGCGG 1 cut(s) 893
SaqAI TTAA 2 cut(s) 419, 648
Sau3AI GATC 8 cut(s) 225, 268, 280, 541, 629, 639, 924, 1008
Sau96I GGNCC 2 cut(s) 826, 993
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 2 cut(s) 85, 854
SduI GDGCHC 3 cut(s) 117, 411, 604
SfaNI GCATC 4 cut(s) 49, 379, 810, 921
SfoI GGCGCC 1 cut(s) 1064
Sfr303I CCGCGG 1 cut(s) 893
SgrBI CCGCGG 1 cut(s) 893
SinI GGWCC 1 cut(s) 826
SmlI CTYRAG 1 cut(s) 288
SmoI CTYRAG 1 cut(s) 288
Sse9I AATT 6 cut(s) 31, 176, 448, 459, 783, 807
SseBI AGGCCT 2 cut(s) 201, 246
SsiI CCGC 9 cut(s) 88, 483, 486, 687, 690, 758, 890, 892, 1066
SspDI GGCGCC 1 cut(s) 1062
SspI AATATT 2 cut(s) 526, 652
SspMI CTAG 2 cut(s) 203, 294
SstI GAGCTC 1 cut(s) 411
StuI AGGCCT 2 cut(s) 201, 246
StyD4I CCNGG 2 cut(s) 83, 852
StyI CCWWGG 3 cut(s) 577, 666, 911
TaaI ACNGT 5 cut(s) 171, 536, 556, 742, 885
TaqI TCGA 1 cut(s) 642
TasI AATT 6 cut(s) 31, 176, 448, 459, 783, 807
TatI WGTACW 1 cut(s) 844
TauI GCSGC 6 cut(s) 91, 486, 690, 693, 892, 1068
Tru1I TTAA 2 cut(s) 419, 648
Tru9I TTAA 2 cut(s) 419, 648
TscAI CASTG 3 cut(s) 235, 1010, 1064
TseFI GTSAC 1 cut(s) 183
TseI GCWGC 5 cut(s) 480, 760, 791, 794, 897
Tsp45I GTSAC 1 cut(s) 183
TspDTI ATGAA 4 cut(s) 4, 488, 707, 940
TspGWI ACGGA 1 cut(s) 1001
TspRI CASTG 3 cut(s) 235, 1010, 1064
VpaK11BI GGWCC 1 cut(s) 826
XceI RCATGY 1 cut(s) 782
XcmI CCANNNNNNNNNTGG 1 cut(s) 125
XmiI GTMKAC 1 cut(s) 304
XspI CTAG 2 cut(s) 203, 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.