Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000188.1

Orthogroup ID

OG0021847

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 836

Gene Structure 836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000188.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 320 bp

gagatgtattcaaggatcttgtgggaagtgcttactatgttgcccccgaagtgctgcgcaggcgttatggagctgaagctgatatttggagtgctggagtgatactatacattctacttagtggggtcccaccattctggggagagaatgaacagggtatctttgatgctattcttcggggtcacattgatttctcatctgatccttggccttccatatccagcagtgccaaagatcttgtgaagaaaatgcttcgagctgatccaaaggaacggcttgcagcagtggatgtccttagtaagttgattttgagaatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010119 GO:0010359 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022898 GO:0023052 GO:0032409 GO:0032412 GO:0032870 GO:0032879 GO:0033993 GO:0034762 GO:0034765 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051716 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1903959

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 Pkinase

Protein Analysis

105

Amino Acids

11.7

Weight (kDa)

5.77

Isoelectric Point (pI)

50.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17890
rosa_chinensis	RchiOBHm_Chr3g0481601
rosa_multiflora	Rmu_ssc0000188.1_g000001
rosa_samantha	Rh6BG466200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	58
AclWI	GGATC	3 cut(s)	23, 196, 256
AcsI	RAATTY	1 cut(s)	314
AcuI	CTGAAG	1 cut(s)	95
AfiI	CCNNNNNNNGG	1 cut(s)	139
AgsI	TTSAA	1 cut(s)	12
AluBI	AGCT	3 cut(s)	73, 79, 259
AluI	AGCT	3 cut(s)	73, 79, 259
AlwI	GGATC	3 cut(s)	23, 196, 256
AoxI	GGCC	1 cut(s)	208
ApeKI	GCWGC	2 cut(s)	54, 280
ApoI	RAATTY	1 cut(s)	314
AspLEI	GCGC	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	126
AvaII	GGWCC	1 cut(s)	126
BbvI	GCAGC	2 cut(s)	41, 292
BceAI	ACGGC	1 cut(s)	289
BglII	AGATCT	1 cut(s)	234
BisI	GCNGC	2 cut(s)	55, 281
BlsI	GCNGC	2 cut(s)	56, 282
Bme18I	GGWCC	1 cut(s)	126
BmgT120I	GGNCC	1 cut(s)	126
BmiI	GGNNCC	2 cut(s)	127, 128
BmsI	GCATC	1 cut(s)	156
BpmI	CTGGAG	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	205
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
BseDI	CCNNGG	1 cut(s)	205
BseGI	GGATG	1 cut(s)	294
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseXI	GCAGC	2 cut(s)	41, 292
BshFI	GGCC	1 cut(s)	210
BslFI	GGGAC	1 cut(s)	112
BslI	CCNNNNNNNGG	1 cut(s)	139
BsmFI	GGGAC	1 cut(s)	112
BsnI	GGCC	1 cut(s)	210
Bsp143I	GATC	4 cut(s)	15, 201, 234, 261
BspANI	GGCC	1 cut(s)	210
BspLI	GGNNCC	2 cut(s)	127, 128
BspPI	GGATC	3 cut(s)	23, 196, 256
BssECI	CCNNGG	1 cut(s)	205
BssMI	GATC	4 cut(s)	15, 201, 234, 261
BssT1I	CCWWGG	1 cut(s)	205
BstC8I	GCNNGC	2 cut(s)	61, 278
BstDEI	CTNAG	2 cut(s)	118, 295
BstF5I	GGATG	1 cut(s)	294
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	4 cut(s)	18, 204, 237, 264
BstMBI	GATC	4 cut(s)	15, 201, 234, 261
BstMWI	GCNNNNNNNGC	1 cut(s)	60
BstV1I	GCAGC	2 cut(s)	41, 292
BstX2I	RGATCY	2 cut(s)	15, 234
BstXI	CCANNNNNNTGG	1 cut(s)	137
BstYI	RGATCY	2 cut(s)	15, 234
BsuRI	GGCC	1 cut(s)	210
BtsCI	GGATG	1 cut(s)	294
BtsI	GCAGTG	2 cut(s)	231, 290
BtsIMutI	CAGTG	2 cut(s)	231, 290
Cac8I	GCNNGC	2 cut(s)	61, 278
CfoI	GCGC	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	126
CviJI	RGCY	5 cut(s)	73, 79, 210, 259, 276
CviKI_1	RGCY	5 cut(s)	73, 79, 210, 259, 276
DdeI	CTNAG	2 cut(s)	118, 295
DpnI	GATC	4 cut(s)	17, 203, 236, 263
DpnII	GATC	4 cut(s)	15, 201, 234, 261
Eco130I	CCWWGG	1 cut(s)	205
Eco47I	GGWCC	1 cut(s)	126
Eco57I	CTGAAG	1 cut(s)	95
EcoO109I	RGGNCCY	1 cut(s)	126
EcoT14I	CCWWGG	1 cut(s)	205
ErhI	CCWWGG	1 cut(s)	205
FaiI	YATR	4 cut(s)	38, 68, 108, 217
FaqI	GGGAC	1 cut(s)	112
Fnu4HI	GCNGC	2 cut(s)	55, 281
FokI	GGATG	1 cut(s)	301
Fsp4HI	GCNGC	2 cut(s)	55, 281
FspI	TGCGCA	1 cut(s)	58
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	2 cut(s)	55, 281
GsuI	CTGGAG	1 cut(s)	116
HaeIII	GGCC	1 cut(s)	210
HhaI	GCGC	1 cut(s)	59
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
Hpy188I	TCNGA	1 cut(s)	201
HpyAV	CCTTC	1 cut(s)	221
HpyCH4V	TGCA	1 cut(s)	280
HpyF10VI	GCNNNNNNNGC	1 cut(s)	60
HpyF3I	CTNAG	2 cut(s)	118, 295
HspAI	GCGC	1 cut(s)	57
KflI	GGGWCCC	1 cut(s)	126
Kzo9I	GATC	4 cut(s)	15, 201, 234, 261
LmnI	GCTCC	1 cut(s)	70
LpnPI	CCDG	5 cut(s)	45, 80, 123, 139, 234
Lsp1109I	GCAGC	2 cut(s)	41, 292
LweI	GCATC	1 cut(s)	156
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	4 cut(s)	17, 203, 236, 263
MboI	GATC	4 cut(s)	15, 201, 234, 261
MboII	GAAGA	2 cut(s)	166, 255
MflI	RGATCY	2 cut(s)	15, 234
MluCI	AATT	1 cut(s)	314
MseI	TTAA	1 cut(s)	318
MwoI	GCNNNNNNNGC	1 cut(s)	60
NdeII	GATC	4 cut(s)	15, 201, 234, 261
NlaIV	GGNNCC	2 cut(s)	127, 128
NmuCI	GTSAC	1 cut(s)	181
NsbI	TGCGCA	1 cut(s)	58
PkrI	GCNGC	2 cut(s)	56, 282
PpuMI	RGGWCCY	1 cut(s)	126
Psp5II	RGGWCCY	1 cut(s)	126
PspN4I	GGNNCC	2 cut(s)	127, 128
PspPI	GGNCC	1 cut(s)	126
PspPPI	RGGWCCY	1 cut(s)	126
PsuI	RGATCY	2 cut(s)	15, 234
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	2 cut(s)	55, 281
Sau3AI	GATC	4 cut(s)	15, 201, 234, 261
Sau96I	GGNCC	1 cut(s)	126
SetI	ASST	3 cut(s)	75, 81, 261
SfaNI	GCATC	1 cut(s)	156
SinI	GGWCC	1 cut(s)	126
Sse9I	AATT	1 cut(s)	314
StyI	CCWWGG	1 cut(s)	205
TaqI	TCGA	1 cut(s)	255
TasI	AATT	1 cut(s)	314
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TscAI	CASTG	2 cut(s)	231, 290
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	2 cut(s)	54, 280
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	1 cut(s)	164
TspRI	CASTG	2 cut(s)	231, 290
VpaK11BI	GGWCC	1 cut(s)	126
XapI	RAATTY	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.